; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G31100 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G31100
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionpentatricopeptide repeat-containing protein At1g62350
Genome locationChr1:25634026..25639126
RNA-Seq ExpressionCSPI01G31100
SyntenyCSPI01G31100
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily
IPR044795 - Pentatricopeptide repeat-containing protein THA8L-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055975.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.1e-5797.46Show/hide
Query:  MLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYD
        MLMMLA+NKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDN MLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYD
Subjt:  MLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYD

Query:  PPEDLFEEDEDSNKSEDD
        PPEDLFEEDED NKSEDD
Subjt:  PPEDLFEEDEDSNKSEDD

TYK28186.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]2.0e-5696.61Show/hide
Query:  MLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYD
        MLMMLA+NKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDN MLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYD
Subjt:  MLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYD

Query:  PPEDLFEEDEDSNKSEDD
        PPEDLF EDED NKSEDD
Subjt:  PPEDLFEEDEDSNKSEDD

XP_004139064.1 pentatricopeptide repeat-containing protein At1g62350 isoform X1 [Cucumis sativus]1.2e-6198.39Show/hide
Query:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP
        MFFYRDMLMMLA+NKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP
Subjt:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP

Query:  DMIVYDPPEDLFEEDEDSNKSEDD
        DMIVYDPPEDLFEEDED NKSEDD
Subjt:  DMIVYDPPEDLFEEDEDSNKSEDD

XP_008450338.1 PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo]4.6e-6197.58Show/hide
Query:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP
        MFFYRDMLMMLA+NKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDN MLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP
Subjt:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP

Query:  DMIVYDPPEDLFEEDEDSNKSEDD
        DMIVYDPPEDLFEEDED NKSEDD
Subjt:  DMIVYDPPEDLFEEDEDSNKSEDD

XP_031735976.1 pentatricopeptide repeat-containing protein At1g62350 isoform X2 [Cucumis sativus]1.2e-6198.39Show/hide
Query:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP
        MFFYRDMLMMLA+NKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP
Subjt:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP

Query:  DMIVYDPPEDLFEEDEDSNKSEDD
        DMIVYDPPEDLFEEDED NKSEDD
Subjt:  DMIVYDPPEDLFEEDEDSNKSEDD

TrEMBL top hitse value%identityAlignment
A0A0A0LZW3 Uncharacterized protein5.8e-6298.39Show/hide
Query:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP
        MFFYRDMLMMLA+NKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP
Subjt:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP

Query:  DMIVYDPPEDLFEEDEDSNKSEDD
        DMIVYDPPEDLFEEDED NKSEDD
Subjt:  DMIVYDPPEDLFEEDEDSNKSEDD

A0A1S3BQ11 pentatricopeptide repeat-containing protein At1g623502.2e-6197.58Show/hide
Query:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP
        MFFYRDMLMMLA+NKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDN MLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP
Subjt:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP

Query:  DMIVYDPPEDLFEEDEDSNKSEDD
        DMIVYDPPEDLFEEDED NKSEDD
Subjt:  DMIVYDPPEDLFEEDEDSNKSEDD

A0A5A7UQR7 Pentatricopeptide repeat-containing protein1.5e-5797.46Show/hide
Query:  MLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYD
        MLMMLA+NKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDN MLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYD
Subjt:  MLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYD

Query:  PPEDLFEEDEDSNKSEDD
        PPEDLFEEDED NKSEDD
Subjt:  PPEDLFEEDEDSNKSEDD

A0A5D3DWQ1 Pentatricopeptide repeat-containing protein9.6e-5796.61Show/hide
Query:  MLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYD
        MLMMLA+NKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDN MLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYD
Subjt:  MLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYD

Query:  PPEDLFEEDEDSNKSEDD
        PPEDLF EDED NKSEDD
Subjt:  PPEDLFEEDEDSNKSEDD

A0A6J1EQI1 pentatricopeptide repeat-containing protein At1g623508.2e-5691.74Show/hide
Query:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP
        MFFYRDMLMMLA+NKRVEETKQVWEDLK EGVLFDQHTFGDI+RAYLDN M SEAMDIYREMR+SPDRPLSLPFRVILKGL+PYPELREQVKDDFLELFP
Subjt:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP

Query:  DMIVYDPPEDLFEEDEDSNKS
        DMIVYDPPEDLFEEDE   KS
Subjt:  DMIVYDPPEDLFEEDEDSNKS

SwissProt top hitse value%identityAlignment
Q1PFH7 Pentatricopeptide repeat-containing protein At1g623504.9e-5075.81Show/hide
Query:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP
        MFFYRDMLMMLARNK+V+ETK+VWEDLKKE VLFDQHTFGD++R +LDN +  EAM +Y EMRESPDRPLSLPFRVILKGL+PYPELRE+VKDDFLELFP
Subjt:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP

Query:  DMIVYDPPEDLFEEDEDSNKSEDD
         MIVYDPPED+ E+ ++  +++ D
Subjt:  DMIVYDPPEDLFEEDEDSNKSEDD

Q9STF9 Protein THYLAKOID ASSEMBLY 8-like, chloroplastic5.9e-2747.32Show/hide
Query:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP
        +F Y+D+++ LA++KR++E   +WE +KKE +  D  T+ ++IR +L +   ++AM++Y +M +SPD P  LPFRV+LKGL+P+P LR +VK DF ELFP
Subjt:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP

Query:  DMIVYDPPEDLF
        +   YDPPE++F
Subjt:  DMIVYDPPEDLF

Q9ZVX5 Pentatricopeptide repeat-containing protein At2g168809.1e-0424.3Show/hide
Query:  YRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELRE--QVKDDF--LELF
        Y  +L  +++  R+ + K++  D+KK G++ ++ T+ +++  Y     L EA  I   M+++   P    + +++ GL     +RE  ++ D    L+L 
Subjt:  YRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELRE--QVKDDF--LELF

Query:  PDMIVYD
        PD++ Y+
Subjt:  PDMIVYD

Arabidopsis top hitse value%identityAlignment
AT1G62350.1 Pentatricopeptide repeat (PPR) superfamily protein3.5e-5175.81Show/hide
Query:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP
        MFFYRDMLMMLARNK+V+ETK+VWEDLKKE VLFDQHTFGD++R +LDN +  EAM +Y EMRESPDRPLSLPFRVILKGL+PYPELRE+VKDDFLELFP
Subjt:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP

Query:  DMIVYDPPEDLFEEDEDSNKSEDD
         MIVYDPPED+ E+ ++  +++ D
Subjt:  DMIVYDPPEDLFEEDEDSNKSEDD

AT2G16880.1 Pentatricopeptide repeat (PPR) superfamily protein6.5e-0524.3Show/hide
Query:  YRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELRE--QVKDDF--LELF
        Y  +L  +++  R+ + K++  D+KK G++ ++ T+ +++  Y     L EA  I   M+++   P    + +++ GL     +RE  ++ D    L+L 
Subjt:  YRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELRE--QVKDDF--LELF

Query:  PDMIVYD
        PD++ Y+
Subjt:  PDMIVYD

AT3G13150.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.4e-0428.09Show/hide
Query:  YRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVK
        Y   +  L RNK+  +   + + +K EG+  D HT+  +I AY  +  L E M  Y EM+E    P ++ + +++  L    +L   V+
Subjt:  YRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVK

AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein4.2e-2847.32Show/hide
Query:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP
        +F Y+D+++ LA++KR++E   +WE +KKE +  D  T+ ++IR +L +   ++AM++Y +M +SPD P  LPFRV+LKGL+P+P LR +VK DF ELFP
Subjt:  MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFP

Query:  DMIVYDPPEDLF
        +   YDPPE++F
Subjt:  DMIVYDPPEDLF

AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein5.5e-0424.3Show/hide
Query:  MLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILK--GLIPYP-----ELREQVKDDFLELF
        ++ ML +  RV     ++  L+++G   D +++  +I A+ ++    EA++++++M E   +P  + + VIL   G +  P      L E++K D   + 
Subjt:  MLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILK--GLIPYP-----ELREQVKDDFLELF

Query:  PDMIVYD
        PD   Y+
Subjt:  PDMIVYD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTTTATAGAGATATGCTTATGATGCTTGCAAGGAACAAAAGGGTAGAGGAAACAAAACAAGTATGGGAGGATCTGAAAAAAGAGGGAGTGTTATTTGATCAGCA
TACTTTTGGAGACATTATTCGAGCATACTTGGATAATACAATGCTCTCTGAGGCCATGGATATATATCGTGAAATGAGAGAATCTCCTGATAGGCCCTTATCTTTGCCTT
TTCGTGTCATTCTTAAGGGCCTTATTCCATATCCAGAATTGAGAGAACAAGTTAAAGATGACTTCTTGGAGCTCTTCCCTGATATGATCGTCTACGATCCACCAGAAGAC
TTGTTTGAAGAAGATGAAGATAGTAACAAGAGTGAAGATGATTAA
mRNA sequenceShow/hide mRNA sequence
TATGAACGAACTAAACATGTAACTTCATTCGTGAGAAAATCTAAGATGGATTGGTGTCCACAGGATATGTGAAGACTGGAGAACAATTGGGAGATATTTTGGCTAAAGCT
TTAAAGATGGAGCAAAGATAAGCTATCTGTGCAACAAGCTGGACATGATCGACATATTTGCTTTCGCTTGAGGGGAGTGTTATGATATATAGTTATAACACGTCCTTTAT
TGTAATTGTACACAGTGTCTAGGATTTATTTTTCTTGTTGAAGAGAGCACTACTGGGTTGGGGAATATACACACCAGTTGGAGAGCTTTCAATGCGAAGGACGAAAGCGT
CGTCTAATGGTGGAATCTTAGAGTCAGAGAGAATCTGTGCCTTTGCCATTTCAAATTCAGCTAAGAGTCCATTCAAAAAATCATAACAACCATCTTCTCTCGTTGAGCTT
GTTGAACTTTAACATCATGACTAAAAGTTGTATAACGTGGTTCGTAAAGAAGTATGGTACCGGCCCGACATGTTCTTTTATAGAGATATGCTTATGATGCTTGCAAGGAA
CAAAAGGGTAGAGGAAACAAAACAAGTATGGGAGGATCTGAAAAAAGAGGGAGTGTTATTTGATCAGCATACTTTTGGAGACATTATTCGAGCATACTTGGATAATACAA
TGCTCTCTGAGGCCATGGATATATATCGTGAAATGAGAGAATCTCCTGATAGGCCCTTATCTTTGCCTTTTCGTGTCATTCTTAAGGGCCTTATTCCATATCCAGAATTG
AGAGAACAAGTTAAAGATGACTTCTTGGAGCTCTTCCCTGATATGATCGTCTACGATCCACCAGAAGACTTGTTTGAAGAAGATGAAGATAGTAACAAGAGTGAAGATGA
TTAACTAATTAAGAATGCTGCTCTTGCAGTTGTAGCTTTAAGTTTTGAATTTTGATAAGTCTC
Protein sequenceShow/hide protein sequence
MFFYRDMLMMLARNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPED
LFEEDEDSNKSEDD