CuGenDBv2

Gene ID	CSPI01G31150
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	BED-type domain-containing protein
Genome location	Chr1:25676631..25677028
RNA-Seq Expression	CSPI01G31150
Synteny	CSPI01G31150
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032269.1 uncharacterized protein E6C27_scaffold219G001030 [Cucumis melo var. makuwa]

1.3e-44

75.2

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Query:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE
        M D+S +KDP WKYGRLQNDQDIN +VCGFCSK+T GG Y +K QHLVG YRNVT CRKCPD+VKEEIK YMSKKK IKEQRNL+VDI ++DYGI+  DE
Subjt:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE

Query:  DEGSVSVNNLNKRATPSVSSLKKPR
        DEGS+SVNN   RAT S SSLKKPR
Subjt:  DEGSVSVNNLNKRATPSVSSLKKPR

TYK16403.1 uncharacterized protein E5676_scaffold21G001980 [Cucumis melo var. makuwa]

2.3e-44

75.2

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Query:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE
        M D+S +KD  WKYGRLQNDQDINT+VCGFCSK+T GG Y +K QHLVGGYRN T CRKCPD+VKEEIK YMSKKK IKEQRNL+VDI ++DYGI+  DE
Subjt:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE

Query:  DEGSVSVNNLNKRATPSVSSLKKPR
        DEGS+SVNN   RAT S SSLKKPR
Subjt:  DEGSVSVNNLNKRATPSVSSLKKPR

XP_031741274.1 uncharacterized protein LOC116403810 [Cucumis sativus]

3.9e-44

75.2

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Query:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE
        M D+S RKDP WKYG+LQNDQ+INT+VCGFCSK+T GG Y MK QHLVGGYRNVT C KCPD+VKEEIK+YMSKKK IKEQRNL+VDI +EDY I+  DE
Subjt:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE

Query:  DEGSVSVNNLNKRATPSVSSLKKPR
        DEGSVSVNN   +ATP   SLKKPR
Subjt:  DEGSVSVNNLNKRATPSVSSLKKPR

XP_031741325.1 uncharacterized protein LOC116403834 [Cucumis sativus]

2.3e-44

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Query:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE
        MVD+S RKDPTWKYG+LQNDQDINT+VCGFCSK+T GG Y MK QHLVGGYRNVT C KCPD+VKEEIK+YMSKKK IKEQRNL+VDI +EDY I+  D+
Subjt:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE

Query:  DEGSVSVNNLNKRATPSVSSLKKPR
        DE SVSVNN   +ATP   SLKKPR
Subjt:  DEGSVSVNNLNKRATPSVSSLKKPR

XP_031745317.1 uncharacterized protein LOC116405444 [Cucumis sativus]

3.9e-44

75.2

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Query:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE
        M D+S RKDP WKYG+LQNDQ+INT+VCGFCSK+T GG Y MK QHLVGGYRNVT C KCPD+VKEEIK+YMSKKK IKEQRNL+VDI +EDY I+  DE
Subjt:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE

Query:  DEGSVSVNNLNKRATPSVSSLKKPR
        DEGSVSVNN   +ATP   SLKKPR
Subjt:  DEGSVSVNNLNKRATPSVSSLKKPR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPX6 Uncharacterized protein

2.5e-44

75.2

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Query:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE
        M D+S +KDP WKYGRLQNDQDINT+V GFCSK+T GG Y +K QHLVGGYRNVT CRKC D+VKEEIK YMSKKK IKEQRNL+VDI ++DYGI+  DE
Subjt:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE

Query:  DEGSVSVNNLNKRATPSVSSLKKPR
        DEGS+SVNN   RAT S SSLKKPR
Subjt:  DEGSVSVNNLNKRATPSVSSLKKPR

A0A5A7SSR3 BED-type domain-containing protein

6.5e-45

75.2

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Query:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE
        M D+S +KDP WKYGRLQNDQDIN +VCGFCSK+T GG Y +K QHLVG YRNVT CRKCPD+VKEEIK YMSKKK IKEQRNL+VDI ++DYGI+  DE
Subjt:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE

Query:  DEGSVSVNNLNKRATPSVSSLKKPR
        DEGS+SVNN   RAT S SSLKKPR
Subjt:  DEGSVSVNNLNKRATPSVSSLKKPR

A0A5A7TWK3 BED-type domain-containing protein

4.2e-44

72.8

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Query:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE
        M D+S +KDP WKYGRLQNDQDINT+VCGFCSK+T GG Y +K QHLVGGYRN   C+KCPD+VKEEI+ YMSKKK IKEQRNL+VDI ++DYG++  DE
Subjt:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE

Query:  DEGSVSVNNLNKRATPSVSSLKKPR
        DEGS+SVNN   RAT S SSLKKPR
Subjt:  DEGSVSVNNLNKRATPSVSSLKKPR

A0A5A7VBF9 BED-type domain-containing protein

4.2e-44

74.4

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Query:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE
        M ++S +KD  WKYGRLQNDQDINT+VCGFCSK+T GG Y +K QHLVGGYRN T CRKCPD+VKEEIK YMSKKK IKEQRNL+VDI ++DYGI+  DE
Subjt:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE

Query:  DEGSVSVNNLNKRATPSVSSLKKPR
        DEGS+SVNN   RAT S SSLKKPR
Subjt:  DEGSVSVNNLNKRATPSVSSLKKPR

A0A5D3CWZ2 BED-type domain-containing protein

1.1e-44

75.2

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Query:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE
        M D+S +KD  WKYGRLQNDQDINT+VCGFCSK+T GG Y +K QHLVGGYRN T CRKCPD+VKEEIK YMSKKK IKEQRNL+VDI ++DYGI+  DE
Subjt:  MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADE

Query:  DEGSVSVNNLNKRATPSVSSLKKPR
        DEGS+SVNN   RAT S SSLKKPR
Subjt:  DEGSVSVNNLNKRATPSVSSLKKPR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G36095.1 DNA binding

1.7e-08

38.14

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Query:  CGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVD--IGIEDYGIKDADEDEGSVSVNNLNKRATPSVSSLK
        C +C K+T GG    K QH++GG+RNVT C   P  ++EEIK  M KK  IK    ++       +DYG     E+E +  V   N+R  P V   K
Subjt:  CGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVD--IGIEDYGIKDADEDEGSVSVNNLNKRATPSVSSLK

AT3G17450.1 hAT dimerisation domain-containing protein

1.7e-05

37.66

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Query:  DPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYM--SKKKMIKEQRN
        DP W++G  Q DQ      C +C KI +GG Y +K QHL      VT C K P+ V   +K+ +  S KK+ + + N
Subjt:  DPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYM--SKKKMIKEQRN

Sequences

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CDS sequence

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ATGGTTGATGATAGTTTGAGAAAAGATCCGACATGGAAATATGGTCGATTACAAAATGACCAAGATATAAATACATATGTGTGCGGATTTTGTTCGAAAATAACAACAGG
AGGGGCATACATAATGAAACAACAACACCTCGTTGGTGGTTATAGAAATGTCACCACTTGTAGAAAATGTCCGGATTATGTGAAGGAGGAAATTAAAAAGTACATGTCCA
AGAAAAAAATGATTAAAGAACAAAGAAATTTGGTTGTGGATATTGGTATAGAAGATTACGGTATCAAGGACGCGGATGAAGATGAAGGGAGTGTTAGTGTAAACAATTTG
AATAAAAGAGCAACACCAAGTGTCTCGAGCTTAAAGAAGCCTAGATAG

mRNA sequence

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AGATGGTTGATGATAGTTTGAGAAAAGATCCGACATGGAAATATGGTCGATTACAAAATGACCAAGATATAAATACATATGTGTGCGGATTTTGTTCGAAAATAACAACA
GGAGGGGCATACATAATGAAACAACAACACCTCGTTGGTGGTTATAGAAATGTCACCACTTGTAGAAAATGTCCGGATTATGTGAAGGAGGAAATTAAAAAGTACATGTC
CAAGAAAAAAATGATTAAAGAACAAAGAAATTTGGTTGTGGATATTGGTATAGAAGATTACGGTATCAAGGACGCGGATGAAGATGAAGGGAGTGTTAGTGTAAACAATT
TGAATAAAAGAGCAACACCAAGTGTCTCGAGCTTAAAGAAGCCTAGATAGATGGGTTTAATGTCTATG

Protein sequence

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MVDDSLRKDPTWKYGRLQNDQDINTYVCGFCSKITTGGAYIMKQQHLVGGYRNVTTCRKCPDYVKEEIKKYMSKKKMIKEQRNLVVDIGIEDYGIKDADEDEGSVSVNNL
NKRATPSVSSLKKPR

CSPI01G31150 (gene) of Cucumber (PI 183967) v1 genome