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CSPI01G31180 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G31180
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description60S ribosomal protein L10a
Genome locationChr1:25703035..25703271
RNA-Seq ExpressionCSPI01G31180
SyntenyCSPI01G31180
Gene Ontology termsGO:0000470 - maturation of LSU-rRNA (biological process)
GO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR023674 - Ribosomal protein L1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033405.1 60S ribosomal protein L10a [Cucumis melo var. makuwa]1.0e-2990.54Show/hide
Query:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  DALREAISSIFADSGEKKRKFTETIEL IGLKNYDPQKDK FSGSVKLPHIPRPKMKIC+LGD SHVEE
Subjt:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

KAE8653536.1 hypothetical protein Csa_007457 [Cucumis sativus]2.3e-3497.37Show/hide
Query:  MYNKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        MYNKLH DALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDK FSGSVKLPHIPRPKMKICILGDVSHVEE
Subjt:  MYNKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

XP_008458587.1 PREDICTED: 60S ribosomal protein L10a [Cucumis melo]1.0e-2990.54Show/hide
Query:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  DALREAISSIFADSGEKKRKFTETIEL IGLKNYDPQKDK FSGSVKLPHIPRPKMKIC+LGD SHVEE
Subjt:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

XP_031736021.1 60S ribosomal protein L10a-like [Cucumis sativus]6.1e-3594.87Show/hide
Query:  MYNKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEEVT
        MYNKLH DALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDK FSGSVKLPHIPRPKMKICILGDVSHVEE++
Subjt:  MYNKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEEVT

XP_038893874.1 60S ribosomal protein L10a [Benincasa hispida]1.4e-2887.84Show/hide
Query:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  DALREAISSIF DS EKKRKFTETIEL IGLKNYDPQKDK FSGSVKLPHIPRPKMKIC+LGD SHVEE
Subjt:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

TrEMBL top hitse value%identityAlignment
A0A0A0KEW8 Ribosomal protein4.9e-3090.54Show/hide
Query:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  DALREAISSIFADSGEKKRKFTETIEL IGLKNYDPQKDK FSGSVKLPHIPRPKMKIC+LGD SHVEE
Subjt:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

A0A0A0M0B3 Uncharacterized protein7.7e-3697.44Show/hide
Query:  MYNKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEEVT
        MYNKLH DALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDK FSGSVKLPHIPRPKMKICILGDVSHVEEVT
Subjt:  MYNKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEEVT

A0A1S3C7Q8 Ribosomal protein4.9e-3090.54Show/hide
Query:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  DALREAISSIFADSGEKKRKFTETIEL IGLKNYDPQKDK FSGSVKLPHIPRPKMKIC+LGD SHVEE
Subjt:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

A0A5A7SW61 60S ribosomal protein L10a4.9e-3090.54Show/hide
Query:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  DALREAISSIFADSGEKKRKFTETIEL IGLKNYDPQKDK FSGSVKLPHIPRPKMKIC+LGD SHVEE
Subjt:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

A0A5A7T1H8 Ribosomal protein9.2e-2986.49Show/hide
Query:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  DALREAISSIF DS EKKRKFTETIEL IGLKNYDPQKDK FSGSVKLPHIPRPKMKIC+LGD SH+EE
Subjt:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

SwissProt top hitse value%identityAlignment
B7F845 60S ribosomal protein L10a1.4e-2672.97Show/hide
Query:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  + L+EAIS +  +S EK RKFTET+EL IGLKNYDPQKDK FSGSVKLPHIPRPKMK+C+LGD  HVEE
Subjt:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

B8B9K6 60S ribosomal protein L10a1.4e-2672.97Show/hide
Query:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  + L+EAIS +  +S EK RKFTET+EL IGLKNYDPQKDK FSGSVKLPHIPRPKMK+C+LGD  HVEE
Subjt:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

P59230 60S ribosomal protein L10a-24.1e-2674.32Show/hide
Query:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  +A+REAI++I   S EKKR F ET+EL IGLKNYDPQKDK FSGSVKLPHIPRPKMKIC+LGD  HVEE
Subjt:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

P59231 60S ribosomal protein L10a-34.5e-2574.67Show/hide
Query:  NKLHGDALREAISSIFADSGE-KKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  +A+REAISSI     E K R FTETIEL IGLKNYDPQKDK FSGSVKLPH+PRPKMKIC+LGD  HVEE
Subjt:  NKLHGDALREAISSIFADSGE-KKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

Q8VZB9 60S ribosomal protein L10a-11.2e-2574.32Show/hide
Query:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  +A+REAI++I   S  KKR F ETIEL IGLKNYDPQKDK FSGSVKLPHIPRPKMKIC+LGD  HVEE
Subjt:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

Arabidopsis top hitse value%identityAlignment
AT1G08360.1 Ribosomal protein L1p/L10e family8.5e-2774.32Show/hide
Query:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  +A+REAI++I   S  KKR F ETIEL IGLKNYDPQKDK FSGSVKLPHIPRPKMKIC+LGD  HVEE
Subjt:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

AT2G27530.1 Ribosomal protein L1p/L10e family2.9e-2774.32Show/hide
Query:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  +A+REAI++I   S EKKR F ET+EL IGLKNYDPQKDK FSGSVKLPHIPRPKMKIC+LGD  HVEE
Subjt:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

AT2G27530.2 Ribosomal protein L1p/L10e family2.9e-2774.32Show/hide
Query:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  +A+REAI++I   S EKKR F ET+EL IGLKNYDPQKDK FSGSVKLPHIPRPKMKIC+LGD  HVEE
Subjt:  NKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

AT5G22440.1 Ribosomal protein L1p/L10e family3.2e-2674.67Show/hide
Query:  NKLHGDALREAISSIFADSGE-KKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  +A+REAISSI     E K R FTETIEL IGLKNYDPQKDK FSGSVKLPH+PRPKMKIC+LGD  HVEE
Subjt:  NKLHGDALREAISSIFADSGE-KKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE

AT5G22440.2 Ribosomal protein L1p/L10e family3.2e-2674.67Show/hide
Query:  NKLHGDALREAISSIFADSGE-KKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL  +A+REAISSI     E K R FTETIEL IGLKNYDPQKDK FSGSVKLPH+PRPKMKIC+LGD  HVEE
Subjt:  NKLHGDALREAISSIFADSGE-KKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAACAAACTTCATGGTGATGCGTTGAGAGAAGCCATTTCATCTATATTTGCTGATAGCGGTGAAAAGAAGCGCAAATTCACCGAGACCATTGAACTTCATATTGG
ACTGAAGAACTATGATCCACAAAAGGACAAGTGTTTCAGTGGTTCAGTAAAGTTGCCGCATATCCCTCGCCCTAAGATGAAGATCTGCATTCTTGGAGATGTTTCACATG
TTGAAGAGGTAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTACAACAAACTTCATGGTGATGCGTTGAGAGAAGCCATTTCATCTATATTTGCTGATAGCGGTGAAAAGAAGCGCAAATTCACCGAGACCATTGAACTTCATATTGG
ACTGAAGAACTATGATCCACAAAAGGACAAGTGTTTCAGTGGTTCAGTAAAGTTGCCGCATATCCCTCGCCCTAAGATGAAGATCTGCATTCTTGGAGATGTTTCACATG
TTGAAGAGGTAACTTAA
Protein sequenceShow/hide protein sequence
MYNKLHGDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKCFSGSVKLPHIPRPKMKICILGDVSHVEEVT