CuGenDBv2

Gene ID	CSPI01G31260
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	succinate dehydrogenase subunit 6, mitochondrial
Genome location	Chr1:25763077..25766040
RNA-Seq Expression	CSPI01G31260
Synteny	CSPI01G31260
Gene Ontology terms	GO:0005749 - mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) (cellular component) GO:0043495 - protein membrane anchor (molecular function)
InterPro domains	IPR034574 - Succinate dehydrogenase subunit 6, mitochondrial

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008450314.1 PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis melo]

4.3e-48

96.97

Show/hide

Query:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG
        MEDSSSQSFFRKHWEGYKEFWS+RFSILDNYSPYVQR TPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYS+SLHGAG
Subjt:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG

XP_011660175.1 succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus]

1.3e-49

100

Show/hide

Query:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG
        MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG
Subjt:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG

XP_022153276.1 succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia]

1.4e-46

93.94

Show/hide

Query:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG
        MEDSSSQSFFRKHWEGYKEFWS+RFSILDNY+PYVQR+ PLPSWSSSDVE FIASDPVHGP LKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG
Subjt:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG

XP_022927277.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata]

8.2e-47

93.94

Show/hide

Query:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG
        MEDSSSQSFFRKHWEGYKEFWS+RFSILDNYSP+VQR+ PLPSWS SDVEEFIASDPVHGPVLKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAG
Subjt:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG

XP_022965868.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima]

8.2e-47

93.94

Show/hide

Query:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG
        MEDSSSQSFFRKHWEGYKEFWS+RFSILDNYSP+VQR+ PLPSWS SDVEEFIASDPVHGPVLKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAG
Subjt:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXK1 Uncharacterized protein

1.9e-49

96.08

Show/hide

Query:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGF
        MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHG   
Subjt:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGF

Query:  VC
         C
Subjt:  VC

A0A1S3BP04 succinate dehydrogenase subunit 6, mitochondrial

2.1e-48

96.97

Show/hide

Query:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG
        MEDSSSQSFFRKHWEGYKEFWS+RFSILDNYSPYVQR TPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYS+SLHGAG
Subjt:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG

A0A5D3DY28 Succinate dehydrogenase subunit 6

2.1e-48

96.97

Show/hide

Query:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG
        MEDSSSQSFFRKHWEGYKEFWS+RFSILDNYSPYVQR TPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYS+SLHGAG
Subjt:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG

A0A6J1EGQ0 succinate dehydrogenase subunit 6, mitochondrial-like

4.0e-47

93.94

Show/hide

Query:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG
        MEDSSSQSFFRKHWEGYKEFWS+RFSILDNYSP+VQR+ PLPSWS SDVEEFIASDPVHGPVLKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAG
Subjt:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG

A0A6J1HQ77 succinate dehydrogenase subunit 6, mitochondrial-like

4.0e-47

93.94

Show/hide

Query:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG
        MEDSSSQSFFRKHWEGYKEFWS+RFSILDNYSP+VQR+ PLPSWS SDVEEFIASDPVHGPVLKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAG
Subjt:  MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAG

SwissProt top hits

e value

%identity

Alignment

Q6ZCC4 Succinate dehydrogenase subunit 6, mitochondrial

1.1e-17

47.67

Show/hide

Query:  KHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHG
        +H EG K  W+  FS LD +     R  PLP W+ +DV+EFIASDPV+GP LK  RE+  F L G+++G     G+A KYS++ HG
Subjt:  KHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHG

Q941A6 Succinate dehydrogenase subunit 6, mitochondrial

8.2e-34

70.97

Show/hide

Query:  SQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGA
        S+SF  K+W G K+FWSDR S  +NY+ + +R  PLPSWSSSDVEEFIASDPVHGP LKTAREAV FG+TG+ +GAVSTA  AWKYSRS HGA
Subjt:  SQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGA

Arabidopsis top hits

e value

%identity

Alignment

AT1G08480.1 unknown protein

5.9e-35

70.97

Show/hide

Query:  SQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGA
        S+SF  K+W G K+FWSDR S  +NY+ + +R  PLPSWSSSDVEEFIASDPVHGP LKTAREAV FG+TG+ +GAVSTA  AWKYSRS HGA
Subjt:  SQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAAGATTCGTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAAGGCTACAAGGAGTTTTGGTCCGACAGATTCTCCATTCTCGACAACTATAGCCCCTACGTTCAGCG
CCAGACCCCTCTTCCTTCATGGTCTTCCTCCGATGTCGAGGAATTTATTGCTTCTGATCCCGTTCATGGACCCGTTTTGAAAACTGCCAGAGAGGCTGTAAACTTTGGTC
TCACAGGAAGTGTTATTGGAGCTGTCTCGACTGCAGGTGTTGCATGGAAATACTCAAGAAGTTTACATGGAGCTGGCTTTGTTTGTCAAGATCTTAAGAATCTTTTTTGT
TTAAATCTGCTGCGTCCAAGCAAACGAACTATCTAG

mRNA sequence

Show/hide mRNA sequence

AACGAGCTTTGAAGAGCTAGAAGAGAGAACAGCTTTCAGGATTCTGATTTCAATCGGATTTAGCTTCTAAAATCTCAATCTTAATCTGTTTTTTGAGGGAGCAATCATGG
AAGATTCGTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAAGGCTACAAGGAGTTTTGGTCCGACAGATTCTCCATTCTCGACAACTATAGCCCCTACGTTCAGCGCCAG
ACCCCTCTTCCTTCATGGTCTTCCTCCGATGTCGAGGAATTTATTGCTTCTGATCCCGTTCATGGACCCGTTTTGAAAACTGCCAGAGAGGCTGTAAACTTTGGTCTCAC
AGGAAGTGTTATTGGAGCTGTCTCGACTGCAGGTGTTGCATGGAAATACTCAAGAAGTTTACATGGAGCTGGCTTTGTTTGTCAAGATCTTAAGAATCTTTTTTGTTTAA
ATCTGCTGCGTCCAAGCAAACGAACTATCTAGGTGAAATGTTTACTATGAGCATTGTGTTCTACATCATACCAAAGCCACAAGTTTCATCATACCAAAACCAGAAGATTC
AGCAGTGAAGAGTTAGAGCAACATAGCATTCATACAGTAGAAGAAGAAACAAGACAGTGATTTATTGGGGGAAGCGTATAAGTCAATCCTCCTTCAGCACGAGCAACTTC
CACCCTCC

Protein sequence

Show/hide protein sequence

MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGFVCQDLKNLFC
LNLLRPSKRTI

CSPI01G31260 (gene) of Cucumber (PI 183967) v1 genome