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CSPI01G31450 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G31450
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr1:26070316..26070867
RNA-Seq ExpressionCSPI01G31450
SyntenyCSPI01G31450
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063362.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.2e-6574.39Show/hide
Query:  IVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEH
        IVNME V KEVE DE+L++I   L+ +P    K+ WLNG L+YK R+V+SK SSL P+LLHTFHDSI GGHS FLRTYKRMSGEL+WK MK D+KKYVE 
Subjt:  IVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEH

Query:  CEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM
        CE+CQRNK EATKPAGV QP+PIP+RILE+W+MDFIEGLPKAGGMNVIMVVVDRLSKY+YF+TM
Subjt:  CEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM

KAE8637370.1 hypothetical protein CSA_004463 [Cucumis sativus]1.5e-6877.58Show/hide
Query:  GIVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVE
        GIV+MEV++KEV  DE+L+  I  LK+NP+  SKF W NG L YKKR+V+SKKSS+ P LLHTFHDSILGGHS FLRTYKRMSGELYW+ MK D+KKYVE
Subjt:  GIVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVE

Query:  HCEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM
         CE+CQRNK+EATKPAGVL P+P PE ILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKY+YFITM
Subjt:  HCEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM

KAE8637561.1 hypothetical protein CSA_017659 [Cucumis sativus]5.7e-6877.58Show/hide
Query:  GIVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVE
        GIV+MEV++KEV  DE+L+  I  LK+NP   SKF W NG LLYKKR+V+SK SS+ P LLHTFHDSILGGHS FLRTYKRMSGELYW+ MK D+KKYVE
Subjt:  GIVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVE

Query:  HCEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM
         CE+CQRNK+EATKPAGVL PIP P+ ILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKY+YFITM
Subjt:  HCEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM

KGN62557.2 hypothetical protein Csa_018739 [Cucumis sativus]9.7e-7686.06Show/hide
Query:  GIVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVE
        GIVNMEVVEKEVELDE+L+ II  LK+NPDE SKFQW+NGNL YKKRIV+SK+S+L P LLHTFHDSILGGHS FLRTYKRM GELYWK MK DVKKYV+
Subjt:  GIVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVE

Query:  HCEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM
         CEVCQRNK EATKPAGVLQPIPIPERILE+WSMDFIEGLPKAGGMNVIMV+VDRLSKYSYFITM
Subjt:  HCEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM

TYK28064.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.2e-6574.39Show/hide
Query:  IVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEH
        IVNME V KEVE DE+L++I   L+ +P    K+ WLNG L+YK R+V+SK SSL P+LLHTFHDSI GGHS FLRTYKRMSGEL+WK MK D+KKYVE 
Subjt:  IVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEH

Query:  CEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM
        CE+CQRNK EATKPAGV QP+PIP+RILE+W+MDFIEGLPKAGGMNVIMVVVDRLSKY+YF+TM
Subjt:  CEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM

TrEMBL top hitse value%identityAlignment
A0A5A7V529 Transposon Ty3-G Gag-Pol polyprotein5.7e-6674.39Show/hide
Query:  IVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEH
        IVNME V KEVE DE+L++I   L+ +P    K+ WLNG L+YK R+V+SK SSL P+LLHTFHDSI GGHS FLRTYKRMSGEL+WK MK D+KKYVE 
Subjt:  IVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEH

Query:  CEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM
        CE+CQRNK EATKPAGV QP+PIP+RILE+W+MDFIEGLPKAGGMNVIMVVVDRLSKY+YF+TM
Subjt:  CEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM

A0A5D3BBH7 Ty3/gypsy retrotransposon protein7.5e-6674.55Show/hide
Query:  GIVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVE
        GIV+MEVV KEVE DE+L+++I  L+ NP    K+   NG L+YK R+V+SK SS+ P+LLHTFHDSILGGHS FLRTYKRMSGEL+WK MK D+KKYVE
Subjt:  GIVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVE

Query:  HCEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM
         CE+CQRNK EATKPAGVLQP+PIP+RILE+W+MDFIEGLPKAGGMNVIMVVVDRLSKY+YF+TM
Subjt:  HCEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM

A0A5D3DX13 Transposon Ty3-G Gag-Pol polyprotein5.7e-6674.39Show/hide
Query:  IVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEH
        IVNME V KEVE DE+L++I   L+ +P    K+ WLNG L+YK R+V+SK SSL P+LLHTFHDSI GGHS FLRTYKRMSGEL+WK MK D+KKYVE 
Subjt:  IVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEH

Query:  CEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM
        CE+CQRNK EATKPAGV QP+PIP+RILE+W+MDFIEGLPKAGGMNVIMVVVDRLSKY+YF+TM
Subjt:  CEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM

A0A5D3DZK6 Ty3/gypsy retrotransposon protein7.5e-6674.55Show/hide
Query:  GIVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVE
        GIV+MEVV KEVE DE+L+++I  L+ NP    K+   NG L+YK R+V+SK SS+ P+LLHTFHDSILGGHS FLRTYKRMSGEL+WK MK D+KKYVE
Subjt:  GIVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVE

Query:  HCEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM
         CE+CQRNK EATKPAGVLQP+PIP+RILE+W+MDFIEGLPKAGGMNVIMVVVDRLSKY+YF+TM
Subjt:  HCEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM

A0A5D3E325 Ty3/gypsy retrotransposon protein7.5e-6674.55Show/hide
Query:  GIVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVE
        GIV+MEVV KEVE DE+L+++I  L+ NP    K+   NG L+YK R+V+SK SS+ P+LLHTFHDSILGGHS FLRTYKRMSGEL+WK MK D+KKYVE
Subjt:  GIVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVE

Query:  HCEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM
         CE+CQRNK EATKPAGVLQP+PIP+RILE+W+MDFIEGLPKAGGMNVIMVVVDRLSKY+YF+TM
Subjt:  HCEVCQRNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITM

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein9.9e-1533.12Show/hide
Query:  VEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKK-RIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEHCEVCQ
        V  E   D  L  ++ N  K  +E+   Q  +G L+  K +I++   + LT  ++  +H+     H         +     WK ++  +++YV++C  CQ
Subjt:  VEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKK-RIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEHCEVCQ

Query:  RNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFI
         NK    KP G LQPIP  ER  E  SMDFI  LP++ G N + VVVDR SK +  +
Subjt:  RNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFI

P0CT35 Transposon Tf2-2 polyprotein9.9e-1533.12Show/hide
Query:  VEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKK-RIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEHCEVCQ
        V  E   D  L  ++ N  K  +E+   Q  +G L+  K +I++   + LT  ++  +H+     H         +     WK ++  +++YV++C  CQ
Subjt:  VEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKK-RIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEHCEVCQ

Query:  RNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFI
         NK    KP G LQPIP  ER  E  SMDFI  LP++ G N + VVVDR SK +  +
Subjt:  RNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFI

P0CT36 Transposon Tf2-3 polyprotein9.9e-1533.12Show/hide
Query:  VEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKK-RIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEHCEVCQ
        V  E   D  L  ++ N  K  +E+   Q  +G L+  K +I++   + LT  ++  +H+     H         +     WK ++  +++YV++C  CQ
Subjt:  VEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKK-RIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEHCEVCQ

Query:  RNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFI
         NK    KP G LQPIP  ER  E  SMDFI  LP++ G N + VVVDR SK +  +
Subjt:  RNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFI

P0CT41 Transposon Tf2-12 polyprotein9.9e-1533.12Show/hide
Query:  VEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKK-RIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEHCEVCQ
        V  E   D  L  ++ N  K  +E+   Q  +G L+  K +I++   + LT  ++  +H+     H         +     WK ++  +++YV++C  CQ
Subjt:  VEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKK-RIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEHCEVCQ

Query:  RNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFI
         NK    KP G LQPIP  ER  E  SMDFI  LP++ G N + VVVDR SK +  +
Subjt:  RNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFI

Q9UR07 Transposon Tf2-11 polyprotein9.9e-1533.12Show/hide
Query:  VEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKK-RIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEHCEVCQ
        V  E   D  L  ++ N  K  +E+   Q  +G L+  K +I++   + LT  ++  +H+     H         +     WK ++  +++YV++C  CQ
Subjt:  VEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKK-RIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEHCEVCQ

Query:  RNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFI
         NK    KP G LQPIP  ER  E  SMDFI  LP++ G N + VVVDR SK +  +
Subjt:  RNKFEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATTGTTAATATGGAAGTAGTTGAGAAGGAGGTTGAGCTGGATGAAGATCTCAGGGTCATCATCGGAAACTTGAAGAAGAATCCAGATGAATCAAGTAAATTTCA
ATGGCTTAATGGGAACTTACTGTATAAGAAAAGAATAGTGGTATCTAAGAAATCATCCTTAACTCCCAACCTACTACATACATTCCATGATTCTATTTTGGGTGGCCACT
CAGAATTCTTAAGGACTTATAAAAGAATGAGTGGGGAATTGTATTGGAAGGAGATGAAAGTTGATGTTAAAAAGTACGTAGAACATTGTGAGGTATGCCAGAGGAACAAG
TTTGAGGCAACCAAACCTGCTGGAGTGTTGCAACCGATTCCAATACCAGAAAGAATTTTGGAGGAATGGTCCATGGACTTCATTGAAGGTCTACCCAAGGCAGGAGGAAT
GAATGTGATCATGGTAGTAGTGGACCGACTAAGCAAATATTCCTACTTCATCACCATGGCACAACACAACCTTCCACGCTTCCACGCTTCAACAAGATCATCACAACCTT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGGAATTGTTAATATGGAAGTAGTTGAGAAGGAGGTTGAGCTGGATGAAGATCTCAGGGTCATCATCGGAAACTTGAAGAAGAATCCAGATGAATCAAGTAAATTTCA
ATGGCTTAATGGGAACTTACTGTATAAGAAAAGAATAGTGGTATCTAAGAAATCATCCTTAACTCCCAACCTACTACATACATTCCATGATTCTATTTTGGGTGGCCACT
CAGAATTCTTAAGGACTTATAAAAGAATGAGTGGGGAATTGTATTGGAAGGAGATGAAAGTTGATGTTAAAAAGTACGTAGAACATTGTGAGGTATGCCAGAGGAACAAG
TTTGAGGCAACCAAACCTGCTGGAGTGTTGCAACCGATTCCAATACCAGAAAGAATTTTGGAGGAATGGTCCATGGACTTCATTGAAGGTCTACCCAAGGCAGGAGGAAT
GAATGTGATCATGGTAGTAGTGGACCGACTAAGCAAATATTCCTACTTCATCACCATGGCACAACACAACCTTCCACGCTTCCACGCTTCAACAAGATCATCACAACCTT
AA
Protein sequenceShow/hide protein sequence
MGIVNMEVVEKEVELDEDLRVIIGNLKKNPDESSKFQWLNGNLLYKKRIVVSKKSSLTPNLLHTFHDSILGGHSEFLRTYKRMSGELYWKEMKVDVKKYVEHCEVCQRNK
FEATKPAGVLQPIPIPERILEEWSMDFIEGLPKAGGMNVIMVVVDRLSKYSYFITMAQHNLPRFHASTRSSQP