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CSPI01G31790 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G31790
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTubulin-folding cofactor E
Genome locationChr1:26457504..26461062
RNA-Seq ExpressionCSPI01G31790
SyntenyCSPI01G31790
Gene Ontology termsGO:0006457 - protein folding (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0043014 - alpha-tubulin binding (molecular function)
InterPro domainsIPR001611 - Leucine-rich repeat
IPR032675 - Leucine-rich repeat domain superfamily
IPR044994 - Tubulin-specific chaperone E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008445986.1 PREDICTED: tubulin-folding cofactor E isoform X1 [Cucumis melo]1.7e-4191.92Show/hide
Query:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK
        P QI   L NLKQLDLTGNLLSDWKDIS +CDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPA+EELHLMGNNISEVK
Subjt:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK

XP_008445987.1 PREDICTED: tubulin-folding cofactor E isoform X2 [Cucumis melo]1.7e-4191.92Show/hide
Query:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK
        P QI   L NLKQLDLTGNLLSDWKDIS +CDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPA+EELHLMGNNISEVK
Subjt:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK

XP_008445988.1 PREDICTED: tubulin-folding cofactor E isoform X3 [Cucumis melo]1.7e-4191.92Show/hide
Query:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK
        P QI   L NLKQLDLTGNLLSDWKDIS +CDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPA+EELHLMGNNISEVK
Subjt:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK

XP_011660193.1 tubulin-folding cofactor E isoform X2 [Cucumis sativus]8.8e-4394.95Show/hide
Query:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK
        P QI   L NLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK
Subjt:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK

XP_031736056.1 tubulin-folding cofactor E isoform X1 [Cucumis sativus]8.8e-4394.95Show/hide
Query:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK
        P QI   L NLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK
Subjt:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK

TrEMBL top hitse value%identityAlignment
A0A0A0M333 Uncharacterized protein4.1e-4695.96Show/hide
Query:  ALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVKFPWADY
        ++ +LKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVKFPWADY
Subjt:  ALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVKFPWADY

A0A1S3BDZ7 Tubulin-folding cofactor E8.0e-4291.92Show/hide
Query:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK
        P QI   L NLKQLDLTGNLLSDWKDIS +CDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPA+EELHLMGNNISEVK
Subjt:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK

A0A1S3BEN9 Tubulin-folding cofactor E8.0e-4291.92Show/hide
Query:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK
        P QI   L NLKQLDLTGNLLSDWKDIS +CDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPA+EELHLMGNNISEVK
Subjt:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK

A0A1S3BEU4 Tubulin-folding cofactor E8.0e-4291.92Show/hide
Query:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK
        P QI   L NLKQLDLTGNLLSDWKDIS +CDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPA+EELHLMGNNISEVK
Subjt:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK

A0A5A7SYG1 Tubulin-folding cofactor E8.0e-4291.92Show/hide
Query:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK
        P QI   L NLKQLDLTGNLLSDWKDIS +CDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPA+EELHLMGNNISEVK
Subjt:  PTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVK

SwissProt top hitse value%identityAlignment
Q32KS0 Tubulin-specific chaperone E4.6e-1039.33Show/hide
Query:  NLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPL---QLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNI
        N++ +DL+ NLLS W+++  I DQL+ L  + LS N L+   S P        +++LVLN TG+TW +V       P +E+L+L  NNI
Subjt:  NLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPL---QLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNI

Q5RBD9 Tubulin-specific chaperone E1.0e-0940.91Show/hide
Query:  NLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPL--QLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNI
        N++++DL+ NLLS W ++  I DQL+ L  + +S N L       L   L  +++LVLN TGITW +V       P +EEL+L  NNI
Subjt:  NLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPL--QLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNI

Q5U378 Tubulin-specific chaperone E1.3e-0940Show/hide
Query:  LKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQL----KHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVKFP
        ++ LDL+GNLLS W+ ++ I +QL +L  + LS+N LS   S P  L     H+R+L +N+  +TW QV         +EEL+L  NNI+E+  P
Subjt:  LKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQL----KHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVKFP

Q8CIV8 Tubulin-specific chaperone E6.0e-1041.11Show/hide
Query:  NLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPL---QLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNIS
        N++ ++L+ NLLS W ++ +I +QL+ L A+ LS N L      P        ++ LVLN TGITW +V     S P +EEL+L  NNIS
Subjt:  NLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPL---QLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNIS

Q8GRL7 Tubulin-folding cofactor E3.3e-2461.54Show/hide
Query:  LINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEV
        L NLK LDLTGNL+SDW++I  +C+QL AL  + LS N LS +I    QLK+IR+LVLNN+G++W QVEIL+ SLP +EELHLMGN IS +
Subjt:  LINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEV

Arabidopsis top hitse value%identityAlignment
AT1G71440.1 tubulin folding cofactor E / Pfifferling (PFI)2.3e-2561.54Show/hide
Query:  LINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEV
        L NLK LDLTGNL+SDW++I  +C+QL AL  + LS N LS +I    QLK+IR+LVLNN+G++W QVEIL+ SLP +EELHLMGN IS +
Subjt:  LINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCATGTGTTACCGTGTATTCTTCCTCGGTTTTTCCAAGCAATTGACTGCAACAAAAAATTCGAACTTCTTCAAATTGGGTTGCCCATGACGGTTGCTCTGACACC
AAATGGATGTAGCCTAAAGGATAAAAGTAGAAGTTTGTTTCATTCAATTGCTGCCGCCTCTTTATCTCCGCCAGCGGACGTTGTTGGTCGAGACAAACTAGATCTGCGCA
TAGATCCGTTGCCTAAATCAGATCCACACATTGATTTCTGCTCTGCTACCCGACACAGCCTAGCCATCTTTGTTGTTGCACGTTCGTTGTTCGCACTGACCTCCCTGCCC
AAATCTGTTTGTGTACCAAATCTACCGCTAAGCCAGACGTCCCTTCTCTCCAAATCCGCACTAGGTTGCCCTCTGCCCAGATTTAACCGACTGGCCCATAGCCTTGCTCG
TTCGAGATCTCCGCCGCTCAGATTTGCCCATCTATCTCTCTTTCGTTTCAAAACCGATTCGATTCAAGTTATTCGAAATGGTTCAGTTCAGTTCATCAATTTGTGCGTTG
TCTCTAGCCCAGTTCTTTGTGTTTTAATTCATTGTGGGTACTTTGTTCAGCCTCAAAGTTTTCTCCCAGAAGTTCATGAGCTTGTTTCCAACCTAGAAGTTCTTTGTGTT
CTAGTTCTTCATGGGTGGCTGTTTCCAACCCAGATTTGGTGTGCTTTAATTAACCTAAAACAGCTTGACCTGACTGGAAATTTGCTATCAGATTGGAAGGATATCAGTAT
CATTTGTGACCAGTTACAAGCTCTTGTAGCCATCATTTTATCGAACAACTTATTGTCGTGTGAAATCTCAGGGCCCCTTCAATTGAAACACATTCGTATTTTAGTTCTAA
ACAATACTGGAATAACTTGGATGCAGGTTGAAATACTTAAACATTCACTGCCGGCTATGGAAGAACTACATCTGATGGGAAATAATATAAGCGAAGTAAAGTTCCCTTGG
GCTGATTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCATGTGTTACCGTGTATTCTTCCTCGGTTTTTCCAAGCAATTGACTGCAACAAAAAATTCGAACTTCTTCAAATTGGGTTGCCCATGACGGTTGCTCTGACACC
AAATGGATGTAGCCTAAAGGATAAAAGTAGAAGTTTGTTTCATTCAATTGCTGCCGCCTCTTTATCTCCGCCAGCGGACGTTGTTGGTCGAGACAAACTAGATCTGCGCA
TAGATCCGTTGCCTAAATCAGATCCACACATTGATTTCTGCTCTGCTACCCGACACAGCCTAGCCATCTTTGTTGTTGCACGTTCGTTGTTCGCACTGACCTCCCTGCCC
AAATCTGTTTGTGTACCAAATCTACCGCTAAGCCAGACGTCCCTTCTCTCCAAATCCGCACTAGGTTGCCCTCTGCCCAGATTTAACCGACTGGCCCATAGCCTTGCTCG
TTCGAGATCTCCGCCGCTCAGATTTGCCCATCTATCTCTCTTTCGTTTCAAAACCGATTCGATTCAAGTTATTCGAAATGGTTCAGTTCAGTTCATCAATTTGTGCGTTG
TCTCTAGCCCAGTTCTTTGTGTTTTAATTCATTGTGGGTACTTTGTTCAGCCTCAAAGTTTTCTCCCAGAAGTTCATGAGCTTGTTTCCAACCTAGAAGTTCTTTGTGTT
CTAGTTCTTCATGGGTGGCTGTTTCCAACCCAGATTTGGTGTGCTTTAATTAACCTAAAACAGCTTGACCTGACTGGAAATTTGCTATCAGATTGGAAGGATATCAGTAT
CATTTGTGACCAGTTACAAGCTCTTGTAGCCATCATTTTATCGAACAACTTATTGTCGTGTGAAATCTCAGGGCCCCTTCAATTGAAACACATTCGTATTTTAGTTCTAA
ACAATACTGGAATAACTTGGATGCAGGTTGAAATACTTAAACATTCACTGCCGGCTATGGAAGAACTACATCTGATGGGAAATAATATAAGCGAAGTAAAGTTCCCTTGG
GCTGATTATTAA
Protein sequenceShow/hide protein sequence
MDHVLPCILPRFFQAIDCNKKFELLQIGLPMTVALTPNGCSLKDKSRSLFHSIAAASLSPPADVVGRDKLDLRIDPLPKSDPHIDFCSATRHSLAIFVVARSLFALTSLP
KSVCVPNLPLSQTSLLSKSALGCPLPRFNRLAHSLARSRSPPLRFAHLSLFRFKTDSIQVIRNGSVQFINLCVVSSPVLCVLIHCGYFVQPQSFLPEVHELVSNLEVLCV
LVLHGWLFPTQIWCALINLKQLDLTGNLLSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILKHSLPAMEELHLMGNNISEVKFPW
ADY