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CSPI01G32130 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G32130
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein
Genome locationChr1:26896913..26897152
RNA-Seq ExpressionCSPI01G32130
SyntenyCSPI01G32130
Gene Ontology termsGO:0001510 - RNA methylation (biological process)
GO:0006412 - translation (biological process)
GO:0034470 - ncRNA processing (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045358.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-1375.44Show/hide
Query:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKK
        MGS + +  EEDDMDINLEDFDIPN HGLEPPS EDM ST TSMTHDA  +RPSKK+
Subjt:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKK

KAA0056667.1 retrotransposon protein [Cucumis melo var. makuwa]6.8e-2678.48Show/hide
Query:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTIIFRGPHRHISHKYARNFQGN
        MGS + +  EEDDMDINLEDFDIPN HGLEPPS EDM ST TSM HDA  +RPSKKKT+IFRGPH HIS KYARNFQGN
Subjt:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTIIFRGPHRHISHKYARNFQGN

KAA0060843.1 uncharacterized protein E6C27_scaffold137G00750 [Cucumis melo var. makuwa]3.9e-1371.93Show/hide
Query:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKK
        MGSH+ + IEEDDMDINLEDFDIPN HGL+PPS ED+SST TSM HD   +RPS K+
Subjt:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKK

TYK27106.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-1475.44Show/hide
Query:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKK
        MGSH+ + IEEDDMDINLEDFDIPN HGL+PPS EDMSST TSM HD   +RPSKK+
Subjt:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKK

XP_008462939.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]6.8e-2678.48Show/hide
Query:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTIIFRGPHRHISHKYARNFQGN
        MGS + +  EEDDMDINLEDFDIPN HGLEPPS EDM ST TSM HDA  +RPSKKKT+IFRGPH HIS KYARNFQGN
Subjt:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTIIFRGPHRHISHKYARNFQGN

TrEMBL top hitse value%identityAlignment
A0A0A0LY11 Uncharacterized protein1.4e-37100Show/hide
Query:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTIIFRGPHRHISHKYARNFQGN
        MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTIIFRGPHRHISHKYARNFQGN
Subjt:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTIIFRGPHRHISHKYARNFQGN

A0A1S3CI24 uncharacterized protein At2g29880-like3.3e-2678.48Show/hide
Query:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTIIFRGPHRHISHKYARNFQGN
        MGS + +  EEDDMDINLEDFDIPN HGLEPPS EDM ST TSM HDA  +RPSKKKT+IFRGPH HIS KYARNFQGN
Subjt:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTIIFRGPHRHISHKYARNFQGN

A0A5A7TR69 Retrotransposon protein8.4e-1475.44Show/hide
Query:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKK
        MGS + +  EEDDMDINLEDFDIPN HGLEPPS EDM ST TSMTHDA  +RPSKK+
Subjt:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKK

A0A5D3C2H8 Retrotransposon protein3.3e-2678.48Show/hide
Query:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTIIFRGPHRHISHKYARNFQGN
        MGS + +  EEDDMDINLEDFDIPN HGLEPPS EDM ST TSM HDA  +RPSKKKT+IFRGPH HIS KYARNFQGN
Subjt:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTIIFRGPHRHISHKYARNFQGN

A0A5D3DTS8 Retrotransposon protein1.7e-1475.44Show/hide
Query:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKK
        MGSH+ + IEEDDMDINLEDFDIPN HGL+PPS EDMSST TSM HD   +RPSKK+
Subjt:  MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTCACATAGTGAAAAATATATCGAAGAAGATGACATGGACATTAATCTCGAAGACTTTGATATTCCAAATCTACATGGACTCGAGCCACCATCGGAGGAGGACAT
GTCATCCACTAAAACAAGTATGACACATGATGCTAGATTAACTAGGCCAAGTAAAAAAAAGACAATCATATTCAGGGGACCTCATAGACACATTTCGCATAAGTATGCTA
GAAACTTTCAAGGAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTCACATAGTGAAAAATATATCGAAGAAGATGACATGGACATTAATCTCGAAGACTTTGATATTCCAAATCTACATGGACTCGAGCCACCATCGGAGGAGGACAT
GTCATCCACTAAAACAAGTATGACACATGATGCTAGATTAACTAGGCCAAGTAAAAAAAAGACAATCATATTCAGGGGACCTCATAGACACATTTCGCATAAGTATGCTA
GAAACTTTCAAGGAAATTGA
Protein sequenceShow/hide protein sequence
MGSHSEKYIEEDDMDINLEDFDIPNLHGLEPPSEEDMSSTKTSMTHDARLTRPSKKKTIIFRGPHRHISHKYARNFQGN