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CSPI01G32250 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G32250
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationChr1:27033396..27033907
RNA-Seq ExpressionCSPI01G32250
SyntenyCSPI01G32250
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051006.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.6e-4673.94Show/hide
Query:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG
        F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYG
Subjt:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG

Query:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
        GDD GRK YVVGK LQFQM DDKPVMEQIHEY  LVANVLSE
Subjt:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.6e-4673.94Show/hide
Query:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG
        F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYG
Subjt:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG

Query:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
        GDD GRK YVVGK LQFQM DDKPVMEQIHEY  LVANVLSE
Subjt:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
TYK04957.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.1e-4573.24Show/hide
Query:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG
        F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYG
Subjt:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG

Query:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
        GDD GRK YVVGK LQFQM DDKPV+EQIHEY  LVANVLSE
Subjt:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
TYK11996.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.1e-4573.24Show/hide
Query:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG
        F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYG
Subjt:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG

Query:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
        GDD GRK YVVGK LQFQM DDKPV+EQIHEY  LVANVLSE
Subjt:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
XP_008456453.1 PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo]1.1e-4572.73Show/hide
Query:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG
        F  +LEV+YVLT + P     PP      S+PESSTG L  V   DQVKK   IDPEKY KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYG
Subjt:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG

Query:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSED
        GDD GRK YVVGK LQFQM DDKPV+EQIHEY  LVANVLSED
Subjt:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSED
TrEMBL top hitse value%identityAlignment
A0A5A7U9X9 Ty1-copia retrotransposon protein1.8e-4673.94Show/hide
Query:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG
        F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYG
Subjt:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG

Query:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
        GDD GRK YVVGK LQFQM DDKPVMEQIHEY  LVANVLSE
Subjt:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
A0A5A7UFB4 Ty1-copia retrotransposon protein5.1e-4672.73Show/hide
Query:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG
        F  +LEV+YVLT + P     PP      S+PESSTG L  V   DQVKK   IDPEKY KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYG
Subjt:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG

Query:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSED
        GDD GRK YVVGK LQFQM DDKPV+EQIHEY  LVANVLSED
Subjt:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSED
A0A5D3BZH6 Ty1-copia retrotransposon protein5.1e-4673.24Show/hide
Query:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG
        F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYG
Subjt:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG

Query:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
        GDD GRK YVVGK LQFQM DDKPV+EQIHEY  LVANVLSE
Subjt:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
A0A5D3BZI1 Ty1-copia retrotransposon protein1.8e-4673.94Show/hide
Query:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG
        F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYG
Subjt:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG

Query:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
        GDD GRK YVVGK LQFQM DDKPVMEQIHEY  LVANVLSE
Subjt:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
A0A5D3CNJ2 Ty1-copia retrotransposon protein5.1e-4673.24Show/hide
Query:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG
        F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYG
Subjt:  FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYG

Query:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
        GDD GRK YVVGK LQFQM DDKPV+EQIHEY  LVANVLSE
Subjt:  GDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY--LVANVLSE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G00980.1 zinc knuckle (CCHC-type) family protein6.7e-0626.92Show/hide
Query:  SDPESSTGSLVVTADQVKKASAIDP--EKYKKDNKTVRGHLLNHMSDPMFDLFVIQ-KSAKDIWCMLESRYGGDDVGRKNYVVGKLLQFQMIDDKPVMEQ
        S+P  S GS        ++ +  D   +K+ +D+     HL+N +SD ++  +  + K AK++W  L+  Y  D+   K   V K ++F+M++++P++EQ
Subjt:  SDPESSTGSLVVTADQVKKASAIDP--EKYKKDNKTVRGHLLNHMSDPMFDLFVIQ-KSAKDIWCMLESRYGGDDVGRKNYVVGKLLQFQMIDDKPVMEQ

Query:  IHEY
        +  +
Subjt:  IHEY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTCAAAAACAAACTTGAAGTAAACTACGTCCTCACCGTCGAACCACCAATCGATCCTCTAGCACCACCAATCGACCCTCCAGCACCCTCTGATCCAGAATCATC
CACGGGATCCCTTGTCGTCACAGCTGACCAGGTAAAGAAAGCATCTGCAATTGATCCTGAGAAGTACAAGAAGGACAACAAGACAGTTCGTGGACATTTGTTGAACCATA
TGTCGGATCCCATGTTTGACTTGTTTGTAATCCAAAAATCTGCCAAAGACATCTGGTGCATGCTAGAGTCTCGCTATGGTGGAGATGACGTTGGACGAAAGAACTACGTT
GTGGGAAAATTGCTGCAGTTCCAAATGATAGATGATAAGCCAGTTATGGAACAGATACATGAGTATCTGGTGGCAAATGTCCTATCTGAAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTCAAAAACAAACTTGAAGTAAACTACGTCCTCACCGTCGAACCACCAATCGATCCTCTAGCACCACCAATCGACCCTCCAGCACCCTCTGATCCAGAATCATC
CACGGGATCCCTTGTCGTCACAGCTGACCAGGTAAAGAAAGCATCTGCAATTGATCCTGAGAAGTACAAGAAGGACAACAAGACAGTTCGTGGACATTTGTTGAACCATA
TGTCGGATCCCATGTTTGACTTGTTTGTAATCCAAAAATCTGCCAAAGACATCTGGTGCATGCTAGAGTCTCGCTATGGTGGAGATGACGTTGGACGAAAGAACTACGTT
GTGGGAAAATTGCTGCAGTTCCAAATGATAGATGATAAGCCAGTTATGGAACAGATACATGAGTATCTGGTGGCAAATGTCCTATCTGAAGATTGA
Protein sequenceShow/hide protein sequence
MSFKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSLVVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYGGDDVGRKNYV
VGKLLQFQMIDDKPVMEQIHEYLVANVLSED