; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G32450 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G32450
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibonuclease P
Genome locationChr1:27275838..27279171
RNA-Seq ExpressionCSPI01G32450
SyntenyCSPI01G32450
Gene Ontology termsGO:0001682 - tRNA 5'-leader removal (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0004526 - ribonuclease P activity (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily
IPR031595 - Protein-only RNase P, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142562.1 proteinaceous RNase P 1, chloroplastic/mitochondrial [Cucumis sativus]3.9e-5299.01Show/hide
Query:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTSMSGF
        YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLH+PTTTGDDLETPREWLCATRPTNTSMSGF
Subjt:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTSMSGF

Query:  E
        E
Subjt:  E

XP_008443714.1 PREDICTED: LOW QUALITY PROTEIN: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis melo]2.9e-4790.1Show/hide
Query:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTSMSGF
        YWLYAAVRFKCLLLTNDEMRDHLFQLLG  FFPQWKEKHQVR S+SRNGLKLHMPP YSIVIQESENGSLHIPTTTGDD+ETP++WLC TRPTNTS SGF
Subjt:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTSMSGF

Query:  E
        E
Subjt:  E

XP_022988265.1 proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucurbita maxima]1.5e-4082.29Show/hide
Query:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTS
        YWLYAAVRFKC LLTND+MRDHLFQLLGN FFPQWKEKHQ+++SVSR+GLKLHMPP YS+VIQE ENGS HIPT T DDLETP++WLCATR T+TS
Subjt:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTS

XP_023516015.1 proteinaceous RNase P 1, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]2.8e-4285.42Show/hide
Query:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTS
        YWLYAAVRFKC LLTNDEMRDHLFQLLGN FFPQWKEKHQ+R+SVSR+GLKLHMPP YS+VIQE ENGS HIPT TGDDLETP++WLCATR T+TS
Subjt:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTS

XP_038878402.1 proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Benincasa hispida]4.3e-4389.58Show/hide
Query:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTS
        YWLYAAVR KCLLLTNDEMRDHLFQLLGN+FFPQWKEKHQVRLSVS +GLKLHMPP YSI+IQESENGS HIPTTTGDDLETPR+WLCATR T+TS
Subjt:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTS

TrEMBL top hitse value%identityAlignment
A0A0A0LXU8 PRORP domain-containing protein1.1e-5298.04Show/hide
Query:  RYWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTSMSG
        +YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLH+PTTTGDDLETPREWLCATRPTNTSMSG
Subjt:  RYWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTSMSG

Query:  FE
        FE
Subjt:  FE

A0A1S3B8R1 Ribonuclease P1.4e-4790.1Show/hide
Query:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTSMSGF
        YWLYAAVRFKCLLLTNDEMRDHLFQLLG  FFPQWKEKHQVR S+SRNGLKLHMPP YSIVIQESENGSLHIPTTTGDD+ETP++WLC TRPTNTS SGF
Subjt:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTSMSGF

Query:  E
        E
Subjt:  E

A0A2K2AR83 Ribonuclease P8.2e-4084.78Show/hide
Query:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRP
        YWLYAAV  KCLL+TNDEMRDHLFQLLG +FFP+WKEKHQVRLSVSR+G+ LHMPP YSIVIQESENG  H+PTTTGDDLETPR+WLCATRP
Subjt:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRP

A0A6J1H9Y1 Ribonuclease P9.7e-4185.71Show/hide
Query:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATR
        YWLYAAVRFKC LLTNDEMRDHLFQLLGN FFPQWKEKHQ+R+SVS++GLKLHMPP YS+VIQE ENGS HIPT TGDDLETP++WLCATR
Subjt:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATR

A0A6J1JJ38 Ribonuclease P7.4e-4182.29Show/hide
Query:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTS
        YWLYAAVRFKC LLTND+MRDHLFQLLGN FFPQWKEKHQ+++SVSR+GLKLHMPP YS+VIQE ENGS HIPT T DDLETP++WLCATR T+TS
Subjt:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTS

SwissProt top hitse value%identityAlignment
F4JKB6 Proteinaceous RNase P 33.7e-2959.57Show/hide
Query:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTN
        YWLYAA + KCLL+TNDEMRDH+F+LL N+FF +WKE+HQVR +  +  LKL MPP +S+VIQESE GS H+P T+ D  E+ R W+C TR ++
Subjt:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTN

Q66GI4 Proteinaceous RNase P 1, chloroplastic/mitochondrial2.0e-3575Show/hide
Query:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSR-NGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATR
        YWLYAAV  KCLL+TNDEMRDHLFQLLGN+FFP+WKEKHQVR+SV+R +GLKL+MPP YSIVIQESE+G+ H+P +  DDL+T R+WLCA R
Subjt:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSR-NGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATR

Q680B9 Proteinaceous RNase P 22.0e-2758.24Show/hide
Query:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATR
        YWLYAA + KCLL+TNDEMRDH+F+LLG+TFF +WKE+HQVR +  +  LKL MP  +S+VIQESE GS H P +  ++ E+ R W+C +R
Subjt:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATR

Arabidopsis top hitse value%identityAlignment
AT2G16650.1 proteinaceous RNase P 21.4e-2858.24Show/hide
Query:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATR
        YWLYAA + KCLL+TNDEMRDH+F+LLG+TFF +WKE+HQVR +  +  LKL MP  +S+VIQESE GS H P +  ++ E+ R W+C +R
Subjt:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATR

AT2G32230.1 proteinaceous RNase P 11.4e-3675Show/hide
Query:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSR-NGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATR
        YWLYAAV  KCLL+TNDEMRDHLFQLLGN+FFP+WKEKHQVR+SV+R +GLKL+MPP YSIVIQESE+G+ H+P +  DDL+T R+WLCA R
Subjt:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSR-NGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATR

AT4G21900.1 proteinaceous RNase P 32.6e-3059.57Show/hide
Query:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTN
        YWLYAA + KCLL+TNDEMRDH+F+LL N+FF +WKE+HQVR +  +  LKL MPP +S+VIQESE GS H+P T+ D  E+ R W+C TR ++
Subjt:  YWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCTCTTTAGTTTTGGTAATGATTGTTGCACCACAACATTACACAAAAATGTTGAAGCATTCTCCATCCAAGAAATCAGTCTTAATTGGGGCCCTCAATTTTCCAG
ATCAGTGGAAGCCACCTTTTTTATGACTCATGTTTTTGCTGCCATCGTGAAAGTTTTTTGTCTTCACTTATTCAGGTACTGGTTATATGCTGCTGTACGCTTTAAATGTT
TGCTGCTGACAAACGATGAAATGAGGGACCACTTGTTTCAATTACTTGGTAACACATTTTTCCCTCAGTGGAAGGAAAAGCATCAGGTTCGATTGTCAGTATCAAGAAAT
GGATTGAAACTCCACATGCCTCCCTCTTATTCAATTGTCATTCAGGAATCTGAAAATGGAAGTTTACACATTCCAACAACTACAGGTGATGATCTAGAGACTCCAAGGGA
ATGGTTATGTGCCACCAGACCCACTAATACTTCCATGAGTGGTTTTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCTCTTTAGTTTTGGTAATGATTGTTGCACCACAACATTACACAAAAATGTTGAAGCATTCTCCATCCAAGAAATCAGTCTTAATTGGGGCCCTCAATTTTCCAG
ATCAGTGGAAGCCACCTTTTTTATGACTCATGTTTTTGCTGCCATCGTGAAAGTTTTTTGTCTTCACTTATTCAGGTACTGGTTATATGCTGCTGTACGCTTTAAATGTT
TGCTGCTGACAAACGATGAAATGAGGGACCACTTGTTTCAATTACTTGGTAACACATTTTTCCCTCAGTGGAAGGAAAAGCATCAGGTTCGATTGTCAGTATCAAGAAAT
GGATTGAAACTCCACATGCCTCCCTCTTATTCAATTGTCATTCAGGAATCTGAAAATGGAAGTTTACACATTCCAACAACTACAGGTGATGATCTAGAGACTCCAAGGGA
ATGGTTATGTGCCACCAGACCCACTAATACTTCCATGAGTGGTTTTGAATAATCACCAATGTATCATTAAAACCCAAGCATCTGGAGCACAATTAAAGCTCAGATTCATT
GGTAGGCTAGCACTTTCAGAATTTGTTGTATTTTTAATTTTAGAAGCTTGTAGCTCAAGTTTGTGTAAAAGTGGGAATAATCAAGGGATATCATTCTGTTAGTATTGACG
TATATGCTCTTTGTAGGATGGGTTGAAGAAATTAACCGAAATGTTAAAAGTTTTTTTTTTTTTTTAAAAAGAAATTATGAGA
Protein sequenceShow/hide protein sequence
MSLFSFGNDCCTTTLHKNVEAFSIQEISLNWGPQFSRSVEATFFMTHVFAAIVKVFCLHLFRYWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRN
GLKLHMPPSYSIVIQESENGSLHIPTTTGDDLETPREWLCATRPTNTSMSGFE