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CSPI01G32480 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G32480
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGag/pol protein
Genome locationChr1:27300791..27301294
RNA-Seq ExpressionCSPI01G32480
SyntenyCSPI01G32480
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025897.1 gag/pol protein [Cucumis melo var. makuwa]7.0e-0875Show/hide
Query:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
        M+SRYQSN  +D WTTV NILKYLRRTKDYM VYGTK ++
Subjt:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
KAA0046061.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-0772.5Show/hide
Query:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
        M+SRYQSN + D WTT+ NILKYLRRTKDYM VYGTK ++
Subjt:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
KAA0062649.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-0775Show/hide
Query:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
        M+SRYQSNL  D WT V NILKYLRRTKDYM VYGTK ++
Subjt:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
TYK01182.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-0775Show/hide
Query:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
        M+SRYQSNL  D WT V NILKYLRRTKDYM VYGTK ++
Subjt:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
TYK11940.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-0772.5Show/hide
Query:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
        M+SRYQSN + D WTT+ NILKYLRRTKDYM VYGTK ++
Subjt:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
TrEMBL top hitse value%identityAlignment
A0A5A7TX70 Gag/pol protein5.8e-0872.5Show/hide
Query:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
        M+SRYQSN + D WTT+ NILKYLRRTKDYM VYGTK ++
Subjt:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
A0A5A7VAF1 Gag/pol protein7.5e-0875Show/hide
Query:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
        M+SRYQSNL  D WT V NILKYLRRTKDYM VYGTK ++
Subjt:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
A0A5D3BQY5 Gag/pol protein7.5e-0875Show/hide
Query:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
        M+SRYQSNL  D WT V NILKYLRRTKDYM VYGTK ++
Subjt:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
A0A5D3CKJ8 Gag/pol protein5.8e-0872.5Show/hide
Query:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
        M+SRYQSN + D WTT+ NILKYLRRTKDYM VYGTK ++
Subjt:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
A0A5D3DVP5 Gag/pol protein3.4e-0875Show/hide
Query:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
        M+SRYQSN  +D WTTV NILKYLRRTKDYM VYGTK ++
Subjt:  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAGTAGGTATCAGTCCAATCTTAAATATGATGACTGGACAACCGTTAATAATATTCTAAAATATCTTAGAAGAACAAAAGATTACATGTTCGTGTATGGTACTAA
GGTGATTGTTGGCGGTGGAAGTGGTTTCATTGGTGGTGGTGGAGCTGCAGCTGCCCCTGCTGGAGGAGATGCTCTAGCTGCTGCAGAAGCCCCAACTGAGAAGAAGGAAG
AGAGTGATGATGAAAACCTTGACTTATCACTTCTTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCAGTAGGTATCAGTCCAATCTTAAATATGATGACTGGACAACCGTTAATAATATTCTAAAATATCTTAGAAGAACAAAAGATTACATGTTCGTGTATGGTACTAA
GGTGATTGTTGGCGGTGGAAGTGGTTTCATTGGTGGTGGTGGAGCTGCAGCTGCCCCTGCTGGAGGAGATGCTCTAGCTGCTGCAGAAGCCCCAACTGAGAAGAAGGAAG
AGAGTGATGATGAAAACCTTGACTTATCACTTCTTGATTAGATTGGTATTAATTACTTGTTATTGTTTTTGTCAATCTAAAAGATCTGTAAAATCAAAGAAGATAGAGCA
AAGATTTTAATGGTGTTTTTAGCAATAGCAAGCAAGATAGTAGTAAATTTAATTTCGTTTC
Protein sequenceShow/hide protein sequence
MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIVGGGSGFIGGGGAAAAPAGGDALAAAEAPTEKKEESDDENLDLSLLD