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CSPI01G32960 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G32960
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein
Genome locationChr1:27857206..27857892
RNA-Seq ExpressionCSPI01G32960
SyntenyCSPI01G32960
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049607.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-4577.59Show/hide
Query:  GALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYH
        GALDG HIKVNVS+S R  YRSRKG++  TTN+LGVCSQNGEFIFVM  W+G VSDSRVLRDAVSRP GLKVPK YYYLC+  YPN EGFLAPY+ QCYH
Subjt:  GALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYH

Query:  LTEWRGGNLPTCPKEL
        L EWRGGN P C KEL
Subjt:  LTEWRGGNLPTCPKEL

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-5059.34Show/hide
Query:  MVVIFLHIVAHDIKNR-----------------------------------------------NCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNIL
        M+ IFLHIVAHD+KNR                                                CLGALDG HIKVNVS+S RP YRSRKG++  TTN+L
Subjt:  MVVIFLHIVAHDIKNR-----------------------------------------------NCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNIL

Query:  GVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYHLTEWRGGNLPTCPKEL
        GVC QNGEFIFVM GW+G  SDSRVLRDAVSR TGLKVPK YYYLCD GYPN EGFLAPY+ Q YHLTEWRGGN P CPKEL
Subjt:  GVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYHLTEWRGGNLPTCPKEL

TYK05758.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.2e-4675.83Show/hide
Query:  RNCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQD
        +NCLGALDG HIKVNVS+S RP YRSRKG++  TTN+LGVCSQNGEFIFVM GW+   SDSRVL+DAVS+P+GLK PK YYYLCD GY N EGFLAPY+ 
Subjt:  RNCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQD

Query:  QCYHLTEWRGGNLPTCPKEL
        Q YHLTEWRGGN P  PKEL
Subjt:  QCYHLTEWRGGNLPTCPKEL

TYK08067.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-4557.71Show/hide
Query:  MVVIFLHIVAHDIKNR----------------------------------------NCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNG
        M  IFLHIVAHD+KNR                                        +C  ALDG HIKVNVS+S  P YRSRK ++  TTN+LG+CSQNG
Subjt:  MVVIFLHIVAHDIKNR----------------------------------------NCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNG

Query:  EFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYHLTEWRGGNLPTCPKEL
        EFIFVM GW+G  SDSRVLRD VSRP GLKVPK YYYLCD  Y NVEGFLAPY+ Q YHL EWRGGN P CPKEL
Subjt:  EFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYHLTEWRGGNLPTCPKEL

XP_038885881.1 protein ALP1-like [Benincasa hispida]9.2e-4761.9Show/hide
Query:  MVVIFLHIVAHDIKNR------------NCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTG
        MV +FLHI+AHD+KNR            NCLGALDG +IKVN S +G P YR+RKG +   TN+  VC  NG F+FV+ GW+GF +DSRV RD +SRP G
Subjt:  MVVIFLHIVAHDIKNR------------NCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTG

Query:  LKVPKDYYYLCDVGYPNVEGFLAPYQDQCYHLTEWR-GGNLPTCPKE
        LKVPK YYYLCDVGYPN EGFLAPY+ + YHL+EWR GGN PT P+E
Subjt:  LKVPKDYYYLCDVGYPNVEGFLAPYQDQCYHLTEWR-GGNLPTCPKE

TrEMBL top hitse value%identityAlignment
A0A5A7U3R2 Retrotransposon protein4.6e-4475.65Show/hide
Query:  ALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYHL
        ALDG HIKVNVS+S  P YRSRK ++  TTN+LG+CSQNGEFIFVM GW+G  SDSRVLRD VSRP GLKVPK YYYLCD  Y NVEGFLAPY+ Q YHL
Subjt:  ALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYHL

Query:  TEWRGGNLPTCPKEL
         EWRGGN P CPKEL
Subjt:  TEWRGGNLPTCPKEL

A0A5A7U5I3 Retrotransposon protein6.5e-4677.59Show/hide
Query:  GALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYH
        GALDG HIKVNVS+S R  YRSRKG++  TTN+LGVCSQNGEFIFVM  W+G VSDSRVLRDAVSRP GLKVPK YYYLC+  YPN EGFLAPY+ QCYH
Subjt:  GALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYH

Query:  LTEWRGGNLPTCPKEL
        L EWRGGN P C KEL
Subjt:  LTEWRGGNLPTCPKEL

A0A5A7VG45 Retrotransposon protein5.1e-5159.34Show/hide
Query:  MVVIFLHIVAHDIKNR-----------------------------------------------NCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNIL
        M+ IFLHIVAHD+KNR                                                CLGALDG HIKVNVS+S RP YRSRKG++  TTN+L
Subjt:  MVVIFLHIVAHDIKNR-----------------------------------------------NCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNIL

Query:  GVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYHLTEWRGGNLPTCPKEL
        GVC QNGEFIFVM GW+G  SDSRVLRDAVSR TGLKVPK YYYLCD GYPN EGFLAPY+ Q YHLTEWRGGN P CPKEL
Subjt:  GVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYHLTEWRGGNLPTCPKEL

A0A5D3C3H1 Putative nuclease HARBI15.8e-4775.83Show/hide
Query:  RNCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQD
        +NCLGALDG HIKVNVS+S RP YRSRKG++  TTN+LGVCSQNGEFIFVM GW+   SDSRVL+DAVS+P+GLK PK YYYLCD GY N EGFLAPY+ 
Subjt:  RNCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQD

Query:  QCYHLTEWRGGNLPTCPKEL
        Q YHLTEWRGGN P  PKEL
Subjt:  QCYHLTEWRGGNLPTCPKEL

A0A5D3C7X6 Retrotransposon protein6.5e-4657.71Show/hide
Query:  MVVIFLHIVAHDIKNR----------------------------------------NCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNG
        M  IFLHIVAHD+KNR                                        +C  ALDG HIKVNVS+S  P YRSRK ++  TTN+LG+CSQNG
Subjt:  MVVIFLHIVAHDIKNR----------------------------------------NCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNG

Query:  EFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYHLTEWRGGNLPTCPKEL
        EFIFVM GW+G  SDSRVLRD VSRP GLKVPK YYYLCD  Y NVEGFLAPY+ Q YHL EWRGGN P CPKEL
Subjt:  EFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYHLTEWRGGNLPTCPKEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein2.7e-1233.33Show/hide
Query:  LGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKV-PKDYYYLCDVGYPNVEGFLAPYQDQ-
        +GA+DG H+ V V    +  Y +R  N  A+ NI+ +C     F ++  G  G   D+ VL+ A    +   + P + YYL D GYPN +G LAPY+   
Subjt:  LGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKV-PKDYYYLCDVGYPNVEGFLAPYQDQ-

Query:  ----CYHLTEWRGGNLPTCPKEL
             YH++++  G  P    EL
Subjt:  ----CYHLTEWRGGNLPTCPKEL

AT5G28730.1 unknown protein3.1e-0840.58Show/hide
Query:  LATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKD-YYYLCDVGYPNVEGFLAPYQ
        +A+ N+L +C  +  F +   G  G   D+RVL  A+S      VP D  YYL D GY N  G+LAPY+
Subjt:  LATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKD-YYYLCDVGYPNVEGFLAPYQ

AT5G28950.1 unknown protein6.0e-1240Show/hide
Query:  RNCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTG-LKVPKD
        ++C+GA+D  HI   VS    P +R+RKG++  + N+L  C+ + EF++V+ GW+G   DS+VL DA++R +  L VP++
Subjt:  RNCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTG-LKVPKD

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)9.6e-1038.54Show/hide
Query:  SRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYHLTEWRGGNL-PTCPKEL
        SRK NM  ++   G  +    FI+V+ GW+G   DSRVL DA+ +          +YL D G+ N   FLAP++   YHL E+ G    P  P EL
Subjt:  SRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPYQDQCYHLTEWRGGNL-PTCPKEL

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)2.8e-1741.84Show/hide
Query:  RNCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPY
        ++C+G +D  HI V V V  +  +R+  GN L T N+L   S +  F +V+ GW+G  SD +VL  A++R   L+VP+  YY+ D  YPN+ GF+APY
Subjt:  RNCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFLAPY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTGATTTTCTTGCATATTGTAGCACACGATATTAAGAATAGGAATTGTCTAGGTGCATTAGATGGTATACACATCAAGGTGAATGTAAGTGTGAGTGGTCGCCC
AGGGTATAGGTCTAGAAAGGGTAATATGCTAGCTACTACAAATATACTTGGTGTGTGTTCGCAAAATGGTGAGTTCATATTTGTCATGTATGGATGGAAAGGGTTTGTAT
CCGATTCAAGGGTACTTAGAGATGCAGTGTCACGACCTACTGGTCTAAAAGTCCCAAAGGATTACTACTACTTGTGTGATGTTGGTTATCCAAATGTTGAAGGATTCCTC
GCTCCATACCAAGATCAATGTTACCATCTAACTGAATGGCGTGGAGGAAACCTACCAACATGCCCGAAAGAGCTAGCTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTGATTTTCTTGCATATTGTAGCACACGATATTAAGAATAGGAATTGTCTAGGTGCATTAGATGGTATACACATCAAGGTGAATGTAAGTGTGAGTGGTCGCCC
AGGGTATAGGTCTAGAAAGGGTAATATGCTAGCTACTACAAATATACTTGGTGTGTGTTCGCAAAATGGTGAGTTCATATTTGTCATGTATGGATGGAAAGGGTTTGTAT
CCGATTCAAGGGTACTTAGAGATGCAGTGTCACGACCTACTGGTCTAAAAGTCCCAAAGGATTACTACTACTTGTGTGATGTTGGTTATCCAAATGTTGAAGGATTCCTC
GCTCCATACCAAGATCAATGTTACCATCTAACTGAATGGCGTGGAGGAAACCTACCAACATGCCCGAAAGAGCTAGCTATTTAA
Protein sequenceShow/hide protein sequence
MVVIFLHIVAHDIKNRNCLGALDGIHIKVNVSVSGRPGYRSRKGNMLATTNILGVCSQNGEFIFVMYGWKGFVSDSRVLRDAVSRPTGLKVPKDYYYLCDVGYPNVEGFL
APYQDQCYHLTEWRGGNLPTCPKELAI