CuGenDBv2

Gene ID	CSPI01G33130
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Genome location	Chr1:28017536..28019301
RNA-Seq Expression	CSPI01G33130
Synteny	CSPI01G33130
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR041588 - Integrase zinc-binding domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025132.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.7e-164

54.07

Show/hide

Query:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG
        ME+LVDEML SG+IRPS SPYSSPVLLVRK+DGS                                                     EDIEKTAFRTHEG
Subjt:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG

Query:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI
        HYEFMVMPFGLTNAPST Q+LMN +F+P+LR+F+LVFFDDILIY++ +EEH QH    LE+LR                           K +EV+PEKI
Subjt:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI

Query:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------
        RA+KEWP P NVRE+RGFLGLTGYYR+FVQ+YGSI+APLTQL+K+G ++WTEET  AF  L+ AM+TLPVLA PDF+  FE+E+DASG            
Subjt:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------

Query:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE
                L+ RDRA+PVYERELMAVV A                                    +W+AKLLGYSFEV+YKP L+NKAADALSRI  T  
Subjt:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE

Query:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE
        L  LTAPAL+D+E                                 G+LK+KGRLVLS+ STLIP I+HTYHD V GGHSGFLRTYKRM GELYW+GMK+
Subjt:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE

Query:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV
        DV+KYC+EC++CQKNK+ ALSPA LL+PLEIP+++WSDISMDFIEGLP+S G+EVI VVVDR SKY HFL LK+P+TAKTVA++FVKE+V
Subjt:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

KAA0049630.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

7.4e-164

54.07

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Query:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG
        ME+LVDEML SG+IRPS SPYSSPVLLVRKKDGS                                                     EDIEKTAFRTHEG
Subjt:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG

Query:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI
        HYEFMVMPFGLTNAPST Q+LMN +F+P+LR+F+LVFFDDILIY++ +EEH QH    LE+LR                           K +EV+PEKI
Subjt:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI

Query:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------
        RA+KEWP P NVRE+RGFLGLTGYYR+FVQ+YGSI+APLTQL+K+G ++WTEET  AF  L+ AM+TLPVLA PDF+  FE+E+DASG            
Subjt:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------

Query:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE
                L+ RDRA+PVYERELMAVV A                                    +W+ KLLGYSFEV+YKP L+NKAADALSRI  T  
Subjt:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE

Query:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE
        L  LTAPAL+D+E                                 G+LK+KGRLVLS+ STLIP I+HTYHD V GGHSGFLRTYKRM GELYW+GMK+
Subjt:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE

Query:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV
        DV+KYC+EC++CQKNK+ ALSPA LL+PLEIP+++WSDISMDFIEGLP+S G+EVI VVVDR SKY HFL LK+P+TAKTVA++FVKE+V
Subjt:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

KAA0049776.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.3e-164

54.24

Show/hide

Query:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG
        ME+LVDEML SG+IRPS SPYSSPVLLVRKKDGS                                                     EDIEKTAFRTHEG
Subjt:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG

Query:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI
        HYEFMVMPFGLTNAPST Q+LMN +F+P+LR+F+LVFFDDILIY++ +EEH QH    LE+LR                           K +EV+PEKI
Subjt:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI

Query:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------
        RA+KEWP P NVRE+RGFLGLTGYYR+FVQ+YGSI+APLTQL+K+G ++WTEET  AF  L+ AM+TLPVLA PDF+  FE+E+DASG            
Subjt:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------

Query:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE
                L+ RDRA+PVYERELMAVV A                                    +W+AKLLGYSFEV+YKP L+NKAADALSRI  T  
Subjt:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE

Query:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE
        L  LTAPAL+D+E                                 G+LK+KGRLVLS+ STLIP I+HTYHD V GGHSGFLRTYKRM GELYW+GMK 
Subjt:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE

Query:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV
        DV+KYC+EC++CQKNK+ ALSPA LL+PLEIP+++WSDISMDFIEGLP+S G+EVI VVVDR SKY HFL LK+P+TAKTVA++FVKE+V
Subjt:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

TYK15990.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.6e-164

54.24

Show/hide

Query:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG
        ME+LVDEML SG+IRPS SPYSSPVLLVRKKDGS                                                     EDIEKTAFRTHEG
Subjt:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG

Query:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI
        HYEFMVMPFGLTNAPST Q+LMN +F+P+LR+F+LVFFDDILIY++ +EEH QH    LE+LR                           K +EV+PEKI
Subjt:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI

Query:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------
        RA+KEWP P NVRE+RGFLGLTGYYR+FVQ+YGSI+APLTQL+K+G ++WTEET  AF  L+ AM+TLPVLA PDF+  FE+E+DASG            
Subjt:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------

Query:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE
                L+ RDRA+PVYERELMAVV A                                    +W+AKLLGYSFEV+YKP L+NKAADALSRI  T  
Subjt:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE

Query:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE
        L  LTAPAL+D+E                                 G+LK+KGRLVLS+ STLIP I+HTYHD V GGHSGFLRTYKRM GELYW+GMK+
Subjt:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE

Query:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV
        DV+KYC+EC++CQKNK+ ALSPA LL+PLEIP+++WSDISMDFIEGLP+S G+EVI VVVDR SKY HFL LK+P+TAKTVA++FVKE+V
Subjt:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.6e-164

54.24

Show/hide

Query:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG
        ME+LVDEML SG+IRPS SPYSSPVLLVRKKDGS                                                     EDIEKTAFRTHEG
Subjt:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG

Query:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI
        HYEFMVMPFGLTNAPST Q+LMN +F+P+LR+F+LVFFDDILIY++ +EEH QH    LE+LR                           K +EV+PEKI
Subjt:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI

Query:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------
        RA+KEWP P NVRE+RGFLGLTGYYR+FVQ+YGSI+APLTQL+K+G ++WTEET  AF  L+ AM+TLPVLA PDF+  FE+E+DASG            
Subjt:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------

Query:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE
                L+ RDRA+PVYERELMAVV A                                    +W+AKLLGYSFEV+YKP L+NKAADALSRI  T  
Subjt:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE

Query:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE
        L  LTAPAL+D+E                                 G+LK+KGRLVLS+ STLIP I+HTYHD V GGHSGFLRTYKRM GELYW+GMK+
Subjt:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE

Query:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV
        DV+KYC+EC++CQKNK+ ALSPA LL+PLEIP+++WSDISMDFIEGLP+S G+EVI VVVDR SKY HFL LK+P+TAKTVA++FVKE+V
Subjt:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SIV7 Ty3/gypsy retrotransposon protein

2.8e-164

54.07

Show/hide

Query:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG
        ME+LVDEML SG+IRPS SPYSSPVLLVRK+DGS                                                     EDIEKTAFRTHEG
Subjt:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG

Query:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI
        HYEFMVMPFGLTNAPST Q+LMN +F+P+LR+F+LVFFDDILIY++ +EEH QH    LE+LR                           K +EV+PEKI
Subjt:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI

Query:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------
        RA+KEWP P NVRE+RGFLGLTGYYR+FVQ+YGSI+APLTQL+K+G ++WTEET  AF  L+ AM+TLPVLA PDF+  FE+E+DASG            
Subjt:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------

Query:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE
                L+ RDRA+PVYERELMAVV A                                    +W+AKLLGYSFEV+YKP L+NKAADALSRI  T  
Subjt:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE

Query:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE
        L  LTAPAL+D+E                                 G+LK+KGRLVLS+ STLIP I+HTYHD V GGHSGFLRTYKRM GELYW+GMK+
Subjt:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE

Query:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV
        DV+KYC+EC++CQKNK+ ALSPA LL+PLEIP+++WSDISMDFIEGLP+S G+EVI VVVDR SKY HFL LK+P+TAKTVA++FVKE+V
Subjt:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

A0A5A7U2S1 Ty3/gypsy retrotransposon protein

3.6e-164

54.07

Show/hide

Query:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG
        ME+LVDEML SG+IRPS SPYSSPVLLVRKKDGS                                                     EDIEKTAFRTHEG
Subjt:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG

Query:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI
        HYEFMVMPFGLTNAPST Q+LMN +F+P+LR+F+LVFFDDILIY++ +EEH QH    LE+LR                           K +EV+PEKI
Subjt:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI

Query:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------
        RA+KEWP P NVRE+RGFLGLTGYYR+FVQ+YGSI+APLTQL+K+G ++WTEET  AF  L+ AM+TLPVLA PDF+  FE+E+DASG            
Subjt:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------

Query:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE
                L+ RDRA+PVYERELMAVV A                                    +W+ KLLGYSFEV+YKP L+NKAADALSRI  T  
Subjt:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE

Query:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE
        L  LTAPAL+D+E                                 G+LK+KGRLVLS+ STLIP I+HTYHD V GGHSGFLRTYKRM GELYW+GMK+
Subjt:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE

Query:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV
        DV+KYC+EC++CQKNK+ ALSPA LL+PLEIP+++WSDISMDFIEGLP+S G+EVI VVVDR SKY HFL LK+P+TAKTVA++FVKE+V
Subjt:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

A0A5A7U6J3 Ty3/gypsy retrotransposon protein

1.6e-164

54.24

Show/hide

Query:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG
        ME+LVDEML SG+IRPS SPYSSPVLLVRKKDGS                                                     EDIEKTAFRTHEG
Subjt:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG

Query:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI
        HYEFMVMPFGLTNAPST Q+LMN +F+P+LR+F+LVFFDDILIY++ +EEH QH    LE+LR                           K +EV+PEKI
Subjt:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI

Query:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------
        RA+KEWP P NVRE+RGFLGLTGYYR+FVQ+YGSI+APLTQL+K+G ++WTEET  AF  L+ AM+TLPVLA PDF+  FE+E+DASG            
Subjt:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------

Query:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE
                L+ RDRA+PVYERELMAVV A                                    +W+AKLLGYSFEV+YKP L+NKAADALSRI  T  
Subjt:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE

Query:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE
        L  LTAPAL+D+E                                 G+LK+KGRLVLS+ STLIP I+HTYHD V GGHSGFLRTYKRM GELYW+GMK 
Subjt:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE

Query:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV
        DV+KYC+EC++CQKNK+ ALSPA LL+PLEIP+++WSDISMDFIEGLP+S G+EVI VVVDR SKY HFL LK+P+TAKTVA++FVKE+V
Subjt:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

A0A5D3CXB1 Ty3/gypsy retrotransposon protein

1.2e-164

54.24

Show/hide

Query:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG
        ME+LVDEML SG+IRPS SPYSSPVLLVRKKDGS                                                     EDIEKTAFRTHEG
Subjt:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG

Query:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI
        HYEFMVMPFGLTNAPST Q+LMN +F+P+LR+F+LVFFDDILIY++ +EEH QH    LE+LR                           K +EV+PEKI
Subjt:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI

Query:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------
        RA+KEWP P NVRE+RGFLGLTGYYR+FVQ+YGSI+APLTQL+K+G ++WTEET  AF  L+ AM+TLPVLA PDF+  FE+E+DASG            
Subjt:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------

Query:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE
                L+ RDRA+PVYERELMAVV A                                    +W+AKLLGYSFEV+YKP L+NKAADALSRI  T  
Subjt:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE

Query:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE
        L  LTAPAL+D+E                                 G+LK+KGRLVLS+ STLIP I+HTYHD V GGHSGFLRTYKRM GELYW+GMK+
Subjt:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE

Query:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV
        DV+KYC+EC++CQKNK+ ALSPA LL+PLEIP+++WSDISMDFIEGLP+S G+EVI VVVDR SKY HFL LK+P+TAKTVA++FVKE+V
Subjt:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

A0A5D3DI73 Ty3/gypsy retrotransposon protein

1.2e-164

54.24

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Query:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG
        ME+LVDEML SG+IRPS SPYSSPVLLVRKKDGS                                                     EDIEKTAFRTHEG
Subjt:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGS-----------------------------------------------------EDIEKTAFRTHEG

Query:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI
        HYEFMVMPFGLTNAPST Q+LMN +F+P+LR+F+LVFFDDILIY++ +EEH QH    LE+LR                           K +EV+PEKI
Subjt:  HYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQH---ALEVLR---------------------------KRVEVNPEKI

Query:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------
        RA+KEWP P NVRE+RGFLGLTGYYR+FVQ+YGSI+APLTQL+K+G ++WTEET  AF  L+ AM+TLPVLA PDF+  FE+E+DASG            
Subjt:  RAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASG------------

Query:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE
                L+ RDRA+PVYERELMAVV A                                    +W+AKLLGYSFEV+YKP L+NKAADALSRI  T  
Subjt:  ------HTLTLRDRAKPVYERELMAVVLA------------------------------------KWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIE

Query:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE
        L  LTAPAL+D+E                                 G+LK+KGRLVLS+ STLIP I+HTYHD V GGHSGFLRTYKRM GELYW+GMK+
Subjt:  LCNLTAPALVDIE---------------------------------GMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE

Query:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV
        DV+KYC+EC++CQKNK+ ALSPA LL+PLEIP+++WSDISMDFIEGLP+S G+EVI VVVDR SKY HFL LK+P+TAKTVA++FVKE+V
Subjt:  DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

3.2e-45

26.69

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Query:  LVRKKDGSEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQHALEVLRKRVEVN-------------
        L+R + G E   K AFR   G +E++VMP+G++ AP+  Q  +NTI        ++ + DDILI+++   EH++H  +VL+K    N             
Subjt:  LVRKKDGSEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQHALEVLRKRVEVN-------------

Query:  -----------------PEKIRAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNG-GFRWTEETNEAFRHLQDAMVTLPVLAQPDFSY
                          E I  + +W  P N +E+R FLG   Y RKF+     +  PL  L+K    ++WT    +A  +++  +V+ PVL   DFS 
Subjt:  -----------------PEKIRAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNG-GFRWTEETNEAFRHLQDAMVTLPVLAQPDFSY

Query:  TFELETDAS----GHTLTLR---DRAKP----------------VYERELMAVV----------------------------------------LAKWVA
           LETDAS    G  L+ +   D+  P                V ++E++A++                                        LA+W  
Subjt:  TFELETDAS----GHTLTLR---DRAKP----------------VYERELMAVV----------------------------------------LAKWVA

Query:  KLLGYSFEVVYKPRLDNKAADALSRIPHTIE------------------------------------LCNLTAPALVDIEGMLKYK-GRLVLSRQSTLIP
         L  ++FE+ Y+P   N  ADALSRI    E                                    L NL       +E  ++ K G L+ S+   L+P
Subjt:  KLLGYSFEVVYKPRLDNKAADALSRIPHTIE------------------------------------LCNLTAPALVDIEGMLKYK-GRLVLSRQSTLIP

Query:  N-------ILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKEDVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFV
        N       I+  YH+     H G       ++    W+G+++ +++Y + C  CQ NK+    P   L P+      W  +SMDFI  LP SSG+  +FV
Subjt:  N-------ILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKEDVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFV

Query:  VVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV
        VVDRFSK    +P     TA+  A +F + ++
Subjt:  VVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

P0CT35 Transposon Tf2-2 polyprotein

3.2e-45

26.69

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Query:  LVRKKDGSEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQHALEVLRKRVEVN-------------
        L+R + G E   K AFR   G +E++VMP+G++ AP+  Q  +NTI        ++ + DDILI+++   EH++H  +VL+K    N             
Subjt:  LVRKKDGSEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQHALEVLRKRVEVN-------------

Query:  -----------------PEKIRAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNG-GFRWTEETNEAFRHLQDAMVTLPVLAQPDFSY
                          E I  + +W  P N +E+R FLG   Y RKF+     +  PL  L+K    ++WT    +A  +++  +V+ PVL   DFS 
Subjt:  -----------------PEKIRAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNG-GFRWTEETNEAFRHLQDAMVTLPVLAQPDFSY

Query:  TFELETDAS----GHTLTLR---DRAKP----------------VYERELMAVV----------------------------------------LAKWVA
           LETDAS    G  L+ +   D+  P                V ++E++A++                                        LA+W  
Subjt:  TFELETDAS----GHTLTLR---DRAKP----------------VYERELMAVV----------------------------------------LAKWVA

Query:  KLLGYSFEVVYKPRLDNKAADALSRIPHTIE------------------------------------LCNLTAPALVDIEGMLKYK-GRLVLSRQSTLIP
         L  ++FE+ Y+P   N  ADALSRI    E                                    L NL       +E  ++ K G L+ S+   L+P
Subjt:  KLLGYSFEVVYKPRLDNKAADALSRIPHTIE------------------------------------LCNLTAPALVDIEGMLKYK-GRLVLSRQSTLIP

Query:  N-------ILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKEDVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFV
        N       I+  YH+     H G       ++    W+G+++ +++Y + C  CQ NK+    P   L P+      W  +SMDFI  LP SSG+  +FV
Subjt:  N-------ILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKEDVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFV

Query:  VVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV
        VVDRFSK    +P     TA+  A +F + ++
Subjt:  VVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

P0CT36 Transposon Tf2-3 polyprotein

3.2e-45

26.69

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Query:  LVRKKDGSEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQHALEVLRKRVEVN-------------
        L+R + G E   K AFR   G +E++VMP+G++ AP+  Q  +NTI        ++ + DDILI+++   EH++H  +VL+K    N             
Subjt:  LVRKKDGSEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQHALEVLRKRVEVN-------------

Query:  -----------------PEKIRAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNG-GFRWTEETNEAFRHLQDAMVTLPVLAQPDFSY
                          E I  + +W  P N +E+R FLG   Y RKF+     +  PL  L+K    ++WT    +A  +++  +V+ PVL   DFS 
Subjt:  -----------------PEKIRAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNG-GFRWTEETNEAFRHLQDAMVTLPVLAQPDFSY

Query:  TFELETDAS----GHTLTLR---DRAKP----------------VYERELMAVV----------------------------------------LAKWVA
           LETDAS    G  L+ +   D+  P                V ++E++A++                                        LA+W  
Subjt:  TFELETDAS----GHTLTLR---DRAKP----------------VYERELMAVV----------------------------------------LAKWVA

Query:  KLLGYSFEVVYKPRLDNKAADALSRIPHTIE------------------------------------LCNLTAPALVDIEGMLKYK-GRLVLSRQSTLIP
         L  ++FE+ Y+P   N  ADALSRI    E                                    L NL       +E  ++ K G L+ S+   L+P
Subjt:  KLLGYSFEVVYKPRLDNKAADALSRIPHTIE------------------------------------LCNLTAPALVDIEGMLKYK-GRLVLSRQSTLIP

Query:  N-------ILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKEDVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFV
        N       I+  YH+     H G       ++    W+G+++ +++Y + C  CQ NK+    P   L P+      W  +SMDFI  LP SSG+  +FV
Subjt:  N-------ILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKEDVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFV

Query:  VVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV
        VVDRFSK    +P     TA+  A +F + ++
Subjt:  VVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

P0CT37 Transposon Tf2-4 polyprotein

3.2e-45

26.69

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Query:  LVRKKDGSEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQHALEVLRKRVEVN-------------
        L+R + G E   K AFR   G +E++VMP+G++ AP+  Q  +NTI        ++ + DDILI+++   EH++H  +VL+K    N             
Subjt:  LVRKKDGSEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQHALEVLRKRVEVN-------------

Query:  -----------------PEKIRAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNG-GFRWTEETNEAFRHLQDAMVTLPVLAQPDFSY
                          E I  + +W  P N +E+R FLG   Y RKF+     +  PL  L+K    ++WT    +A  +++  +V+ PVL   DFS 
Subjt:  -----------------PEKIRAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNG-GFRWTEETNEAFRHLQDAMVTLPVLAQPDFSY

Query:  TFELETDAS----GHTLTLR---DRAKP----------------VYERELMAVV----------------------------------------LAKWVA
           LETDAS    G  L+ +   D+  P                V ++E++A++                                        LA+W  
Subjt:  TFELETDAS----GHTLTLR---DRAKP----------------VYERELMAVV----------------------------------------LAKWVA

Query:  KLLGYSFEVVYKPRLDNKAADALSRIPHTIE------------------------------------LCNLTAPALVDIEGMLKYK-GRLVLSRQSTLIP
         L  ++FE+ Y+P   N  ADALSRI    E                                    L NL       +E  ++ K G L+ S+   L+P
Subjt:  KLLGYSFEVVYKPRLDNKAADALSRIPHTIE------------------------------------LCNLTAPALVDIEGMLKYK-GRLVLSRQSTLIP

Query:  N-------ILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKEDVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFV
        N       I+  YH+     H G       ++    W+G+++ +++Y + C  CQ NK+    P   L P+      W  +SMDFI  LP SSG+  +FV
Subjt:  N-------ILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKEDVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFV

Query:  VVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV
        VVDRFSK    +P     TA+  A +F + ++
Subjt:  VVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

P0CT41 Transposon Tf2-12 polyprotein

3.2e-45

26.69

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Query:  LVRKKDGSEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQHALEVLRKRVEVN-------------
        L+R + G E   K AFR   G +E++VMP+G++ AP+  Q  +NTI        ++ + DDILI+++   EH++H  +VL+K    N             
Subjt:  LVRKKDGSEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQHALEVLRKRVEVN-------------

Query:  -----------------PEKIRAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNG-GFRWTEETNEAFRHLQDAMVTLPVLAQPDFSY
                          E I  + +W  P N +E+R FLG   Y RKF+     +  PL  L+K    ++WT    +A  +++  +V+ PVL   DFS 
Subjt:  -----------------PEKIRAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNG-GFRWTEETNEAFRHLQDAMVTLPVLAQPDFSY

Query:  TFELETDAS----GHTLTLR---DRAKP----------------VYERELMAVV----------------------------------------LAKWVA
           LETDAS    G  L+ +   D+  P                V ++E++A++                                        LA+W  
Subjt:  TFELETDAS----GHTLTLR---DRAKP----------------VYERELMAVV----------------------------------------LAKWVA

Query:  KLLGYSFEVVYKPRLDNKAADALSRIPHTIE------------------------------------LCNLTAPALVDIEGMLKYK-GRLVLSRQSTLIP
         L  ++FE+ Y+P   N  ADALSRI    E                                    L NL       +E  ++ K G L+ S+   L+P
Subjt:  KLLGYSFEVVYKPRLDNKAADALSRIPHTIE------------------------------------LCNLTAPALVDIEGMLKYK-GRLVLSRQSTLIP

Query:  N-------ILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKEDVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFV
        N       I+  YH+     H G       ++    W+G+++ +++Y + C  CQ NK+    P   L P+      W  +SMDFI  LP SSG+  +FV
Subjt:  N-------ILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKEDVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFV

Query:  VVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV
        VVDRFSK    +P     TA+  A +F + ++
Subjt:  VVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

Arabidopsis top hits

e value

%identity

Alignment

ATMG00850.1 DNA/RNA polymerases superfamily protein

6.3e-04

60.61

Show/hide

Query:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDG
        ++  + EML + +I+PS SPYSSPVLLV+KKDG
Subjt:  MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDG

ATMG00860.1 DNA/RNA polymerases superfamily protein

2.3e-22

45.79

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Query:  YNQDLEEHLQHALEVLRKRVEVNPEKIRAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQ
        + Q    +L H   +  + V  +P K+ A+  WP P N  E+RGFLGLTGYYR+FV++YG I  PLT+L+K    +WTE    AF+ L+ A+ TLPVLA 
Subjt:  YNQDLEEHLQHALEVLRKRVEVNPEKIRAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQ

Query:  PDFSYTF
        PD    F
Subjt:  PDFSYTF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGAAATTGGTTGATGAGATGCTAATTTCAGGAGTAATTCGTCCGAGCAATAGTCCTTATTCCAGTCCGGTTTTGTTGGTGAGGAAGAAAGACGGAAGTGAAGACAT
AGAGAAAACGGCATTCCGGACACATGAGGGACATTATGAATTCATGGTCATGCCATTTGGGTTGACTAATGCTCCATCTACGTTGCAGTCATTGATGAACACGATTTTTC
GACCATATTTGCGGAAATTCATATTAGTATTCTTTGATGATATTCTGATATACAATCAGGATTTAGAAGAGCACCTGCAGCATGCGTTGGAAGTTCTAAGGAAGAGGGTG
GAGGTAAACCCGGAGAAAATCCGAGCAATCAAAGAATGGCCCATACCGACGAATGTGAGGGAAGTTCGGGGGTTCCTTGGATTGACAGGGTACTATAGGAAATTTGTACA
ACACTATGGATCTATTGCAGCCCCGTTAACTCAGCTAATGAAGAATGGAGGATTCAGATGGACCGAGGAAACAAATGAAGCCTTTCGGCATTTGCAGGATGCAATGGTGA
CCCTTCCAGTCTTGGCACAACCAGATTTCAGCTACACTTTTGAACTCGAAACTGATGCTTCGGGCCACACTTTGACTTTGAGAGATAGAGCTAAACCAGTGTACGAGAGG
GAGTTGATGGCAGTAGTATTAGCAAAATGGGTAGCCAAATTACTAGGTTACTCCTTCGAAGTGGTGTATAAACCACGTCTGGACAATAAGGCAGCTGACGCTTTGTCAAG
AATACCTCATACCATTGAACTATGCAATTTGACAGCACCGGCACTGGTGGACATAGAGGGGATGCTTAAGTATAAAGGAAGATTAGTGCTATCTAGACAATCAACACTAA
TTCCAAACATACTGCATACATATCACGATTTTGTATTAGGAGGTCATTCGGGATTTCTGCGAACGTATAAGAGAATGATGGGAGAATTGTATTGGGAAGGCATGAAGGAG
GATGTTAAGAAGTATTGTAAGGAATGCATAGTTTGTCAAAAAAATAAAACATTGGCTCTGTCCCCAGCACGGTTGCTAATGCCTTTAGAGATTCCAAACAGTGTTTGGAG
CGATATTTCTATGGATTTCATTGAAGGTTTACCAAGGTCGAGTGGATTTGAAGTGATATTTGTAGTGGTTGATAGATTCAGCAAATACGGTCATTTCCTACCTCTTAAAT
ATCCTTTTACAGCTAAAACAGTGGCTGACTTGTTTGTGAAGGAGATCGTATGA

mRNA sequence

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Protein sequence

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MEKLVDEMLISGVIRPSNSPYSSPVLLVRKKDGSEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTLQSLMNTIFRPYLRKFILVFFDDILIYNQDLEEHLQHALEVLRKRV
EVNPEKIRAIKEWPIPTNVREVRGFLGLTGYYRKFVQHYGSIAAPLTQLMKNGGFRWTEETNEAFRHLQDAMVTLPVLAQPDFSYTFELETDASGHTLTLRDRAKPVYER
ELMAVVLAKWVAKLLGYSFEVVYKPRLDNKAADALSRIPHTIELCNLTAPALVDIEGMLKYKGRLVLSRQSTLIPNILHTYHDFVLGGHSGFLRTYKRMMGELYWEGMKE
DVKKYCKECIVCQKNKTLALSPARLLMPLEIPNSVWSDISMDFIEGLPRSSGFEVIFVVVDRFSKYGHFLPLKYPFTAKTVADLFVKEIV

CSPI01G33130 (gene) of Cucumber (PI 183967) v1 genome