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CSPI01G33680 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G33680
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionpseudouridylate synthase 7 homolog isoform X1
Genome locationChr1:28635332..28637665
RNA-Seq ExpressionCSPI01G33680
SyntenyCSPI01G33680
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0008033 - tRNA processing (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0009982 - pseudouridine synthase activity (molecular function)
InterPro domainsIPR001656 - Pseudouridine synthase, TruD
IPR020103 - Pseudouridine synthase, catalytic domain superfamily
IPR042214 - Pseudouridine synthase, TruD, catalytic domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637491.1 hypothetical protein CSA_016973 [Cucumis sativus]2.4e-6199.22Show/hide
Query:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ
        REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIA+KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ
Subjt:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ

Query:  MALKLSFTLPASSYATMAIRELLKTSTS
        MALKLSFTLPASSYATMAIRELLKTSTS
Subjt:  MALKLSFTLPASSYATMAIRELLKTSTS

KAE8653626.1 hypothetical protein Csa_007629 [Cucumis sativus]1.1e-7798.72Show/hide
Query:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ
        REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIA+KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ
Subjt:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ

Query:  MALKLSFTLPASSYATMAIRELLKTSTSGLALPYMETDGNSEKFSRSMKREPGDKG
        MALKLSFTLPASSYATMAIRELLKTSTSGLALPYMETDGNSEKFSRS+KREPGDKG
Subjt:  MALKLSFTLPASSYATMAIRELLKTSTSGLALPYMETDGNSEKFSRSMKREPGDKG

XP_008462718.1 PREDICTED: pseudouridylate synthase 7 homolog isoform X2 [Cucumis melo]2.3e-5693.75Show/hide
Query:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ
        +EFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLH LLKSQSVEISKEEKIANKSK EDSLDSTDQSVCCKK+IQLEAGG E E GQGT DPQ
Subjt:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ

Query:  MALKLSFTLPASSYATMAIRELLKTSTS
        MALKLSFTLPASSYATMAIRELLKTSTS
Subjt:  MALKLSFTLPASSYATMAIRELLKTSTS

XP_011660284.1 LOW QUALITY PROTEIN: pseudouridylate synthase 7 homolog [Cucumis sativus]5.2e-6198.44Show/hide
Query:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ
        +EFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIA+KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ
Subjt:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ

Query:  MALKLSFTLPASSYATMAIRELLKTSTS
        MALKLSFTLPASSYATMAIRELLKTSTS
Subjt:  MALKLSFTLPASSYATMAIRELLKTSTS

XP_031745921.1 multisubstrate pseudouridine synthase 7-like, partial [Cucumis sativus]5.2e-6198.44Show/hide
Query:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ
        +EFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIA+KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ
Subjt:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ

Query:  MALKLSFTLPASSYATMAIRELLKTSTS
        MALKLSFTLPASSYATMAIRELLKTSTS
Subjt:  MALKLSFTLPASSYATMAIRELLKTSTS

TrEMBL top hitse value%identityAlignment
A0A0A0LYD2 Uncharacterized protein1.1e-7798.08Show/hide
Query:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ
        +EFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIA+KSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ
Subjt:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ

Query:  MALKLSFTLPASSYATMAIRELLKTSTSGLALPYMETDGNSEKFSRSMKREPGDKG
        MALKLSFTLPASSYATMAIRELLKTSTSGLALPYMETDGNSEKFSRS+KREPGDKG
Subjt:  MALKLSFTLPASSYATMAIRELLKTSTSGLALPYMETDGNSEKFSRSMKREPGDKG

A0A1S3CHJ1 pseudouridylate synthase 7 homolog isoform X11.1e-5693.75Show/hide
Query:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ
        +EFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLH LLKSQSVEISKEEKIANKSK EDSLDSTDQSVCCKK+IQLEAGG E E GQGT DPQ
Subjt:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ

Query:  MALKLSFTLPASSYATMAIRELLKTSTS
        MALKLSFTLPASSYATMAIRELLKTSTS
Subjt:  MALKLSFTLPASSYATMAIRELLKTSTS

A0A1S3CI40 pseudouridylate synthase 7 homolog isoform X21.1e-5693.75Show/hide
Query:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ
        +EFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLH LLKSQSVEISKEEKIANKSK EDSLDSTDQSVCCKK+IQLEAGG E E GQGT DPQ
Subjt:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ

Query:  MALKLSFTLPASSYATMAIRELLKTSTS
        MALKLSFTLPASSYATMAIRELLKTSTS
Subjt:  MALKLSFTLPASSYATMAIRELLKTSTS

A0A5A7V3D9 Pseudouridylate synthase 7-like protein isoform X17.1e-5692.97Show/hide
Query:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ
        +EFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLH LLKSQSV ISKEEKIANKSK EDSLDSTDQSVCCKK+IQLEAGG E E GQGT DPQ
Subjt:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQ

Query:  MALKLSFTLPASSYATMAIRELLKTSTS
        MALKLSFTLPASSYATMAIRELLKTSTS
Subjt:  MALKLSFTLPASSYATMAIRELLKTSTS

A0A5D3DZA9 Pseudouridylate synthase 7-like protein isoform X22.8e-5293.39Show/hide
Query:  MTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSF
        MTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLH LLKSQSV ISKEEKIANKSK EDSLDSTDQSVCCKK+IQLEAGG E E GQGT DPQMALKLSF
Subjt:  MTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSF

Query:  TLPASSYATMAIRELLKTSTS
        TLPASSYATMAIRELLKTSTS
Subjt:  TLPASSYATMAIRELLKTSTS

SwissProt top hitse value%identityAlignment
Q08647 Multisubstrate pseudouridine synthase 71.2e-0429.63Show/hide
Query:  MEP-DFHREFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENG
        M+P +  R+    S+ GSYR V Q+PK  E+ +I Y D +  L  +DL  L  +++ E  ++   A   +                    + GG++    
Subjt:  MEP-DFHREFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENG

Query:  QGTQDPQMALKLSFTLPASSYATMAIRELLKTSTS
                A+ L F L  S+YATMA+REL+K  TS
Subjt:  QGTQDPQMALKLSFTLPASSYATMAIRELLKTSTS

Q08DI8 Pseudouridylate synthase 7 homolog2.2e-0629.51Show/hide
Query:  SMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLS
        S++G+YR++  RP++  WE+++Y D  +PL  +D+ NL        + E K                                            ALK+ 
Subjt:  SMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLS

Query:  FTLPASSYATMAIRELLKTSTS
        F+LP S+YATMAIRE+LK  TS
Subjt:  FTLPASSYATMAIRELLKTSTS

Q91VU7 Pseudouridylate synthase 7 homolog1.0e-0630.33Show/hide
Query:  SMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLS
        S++G+YRR+  RP+   WE+++Y D  +PL  +D+ NL        + E K                                            ALK+ 
Subjt:  SMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLS

Query:  FTLPASSYATMAIRELLKTSTS
        F+LP S+YATMAIRE+LK  TS
Subjt:  FTLPASSYATMAIRELLKTSTS

Q96PZ0 Pseudouridylate synthase 7 homolog1.7e-0629.51Show/hide
Query:  SMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLS
        S++G+YR++  RP++  WE+++Y D  +PL  +D+ NL        + E K                                            ALK+ 
Subjt:  SMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLS

Query:  FTLPASSYATMAIRELLKTSTS
        F+LP S+YATMAIRE+LK  TS
Subjt:  FTLPASSYATMAIRELLKTSTS

Arabidopsis top hitse value%identityAlignment
AT3G04820.1 Pseudouridine synthase family protein2.5e-2449.24Show/hide
Query:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVE-ISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQD-
        +EFSITSMTG YRRVFQ+P D+EWEL++Y D N PLA++DL  +  ++ VE +   E+I ++S   D    T+     + N++ +    E E   G  D 
Subjt:  REFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVE-ISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQD-

Query:  --PQMALKLSFTLPASSYATMAIRELLKTSTS
           QMALK++ TLP+S YATMAIRELLKTSTS
Subjt:  --PQMALKLSFTLPASSYATMAIRELLKTSTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCGGATTTCCATAGGGAATTTTCGATTACCAGTATGACTGGGAGCTATCGGAGAGTTTTTCAAAGACCAAAGGACTACGAGTGGGAATTGATCTCATATGTTGA
TCGTAATTTACCTCTGGCACAGAGTGATTTACATAACCTTTTGAAGTCTCAAAGTGTTGAAATTAGCAAGGAAGAAAAGATAGCCAATAAATCTAAAAATGAAGATTCAT
TGGATTCCACTGATCAATCAGTGTGCTGTAAAAAGAATATTCAACTTGAAGCAGGGGGAAAGGAGAATGAAAATGGGCAAGGCACTCAGGATCCTCAGATGGCTCTCAAG
CTGAGCTTTACTCTCCCGGCATCTTCTTATGCTACGATGGCAATTAGAGAATTGCTGAAAACATCAACTTCTGGATTAGCTTTGCCATACATGGAGACTGATGGGAATTC
AGAGAAGTTCAGTAGGAGCATGAAGAGAGAACCTGGGGACAAGGGGCACTTCGGAGAACACGAAAATCTTTCTAGTGAGCCAATCTGCTGTTTCAGTTTGGACCAATTCC
GTTTGAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAACCGGATTTCCATAGGGAATTTTCGATTACCAGTATGACTGGGAGCTATCGGAGAGTTTTTCAAAGACCAAAGGACTACGAGTGGGAATTGATCTCATATGTTGA
TCGTAATTTACCTCTGGCACAGAGTGATTTACATAACCTTTTGAAGTCTCAAAGTGTTGAAATTAGCAAGGAAGAAAAGATAGCCAATAAATCTAAAAATGAAGATTCAT
TGGATTCCACTGATCAATCAGTGTGCTGTAAAAAGAATATTCAACTTGAAGCAGGGGGAAAGGAGAATGAAAATGGGCAAGGCACTCAGGATCCTCAGATGGCTCTCAAG
CTGAGCTTTACTCTCCCGGCATCTTCTTATGCTACGATGGCAATTAGAGAATTGCTGAAAACATCAACTTCTGGATTAGCTTTGCCATACATGGAGACTGATGGGAATTC
AGAGAAGTTCAGTAGGAGCATGAAGAGAGAACCTGGGGACAAGGGGCACTTCGGAGAACACGAAAATCTTTCTAGTGAGCCAATCTGCTGTTTCAGTTTGGACCAATTCC
GTTTGAGGTAG
Protein sequenceShow/hide protein sequence
MEPDFHREFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIANKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALK
LSFTLPASSYATMAIRELLKTSTSGLALPYMETDGNSEKFSRSMKREPGDKGHFGEHENLSSEPICCFSLDQFRLR