; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G33950 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G33950
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibonuclease H
Genome locationChr1:28914480..28916065
RNA-Seq ExpressionCSPI01G33950
SyntenyCSPI01G33950
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025355.1 uncharacterized protein E6C27_scaffold1204G00390 [Cucumis melo var. makuwa]6.6e-8235.68Show/hide
Query:  MLGDLVL-----GKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPI
        +L  LVL     GK LI+YIA QE SL AL  QE +KGKECALYYLSR L G E+NYS I+ MCLALFFAI+K RHYMQAFT+HLVAKADP+KYI  RP+
Subjt:  MLGDLVL-----GKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPI

Query:  IFRRLAKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE---------------------GLGLG---------------------
        I  RLAKWAI+LQQYDIVYIP+KA++GQ LADFLADH IPS+WKLC+DL D+E                     G+G+G                     
Subjt:  IFRRLAKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE---------------------GLGLG---------------------

Query:  --DSI--------------------------------------WL-------------------------------------------------------
          DSI                                      W+                                                       
Subjt:  --DSI--------------------------------------WL-------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----ASITPKSSKGHLYILATIDYFSRWAESIPLREAKKQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS-----------------------------
              ITPKSS GH YILA  DYFS+WAE++PL+EAKK+N+V F++TH+IYRY IP RIV DNGR+FPN+                             
Subjt:  ----ASITPKSSKGHLYILATIDYFSRWAESIPLREAKKQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS-----------------------------

Query:  ----------KIISKSKRGWKERIGETLWAYCTTHRTPT-------------------------------------------RLETLDEKRLEAQQALEC
                  K++SK+KR W+E+IGE LWAY TTHRTPT                                            LE LDEKRLEAQQALEC
Subjt:  ----------KIISKSKRGWKERIGETLWAYCTTHRTPT-------------------------------------------RLETLDEKRLEAQQALEC

Query:  YQARMSKAFDKHVKPRSFQVGDLVL
        YQARMSKAFDK V+PRSFQVGDLVL
Subjt:  YQARMSKAFDKHVKPRSFQVGDLVL

KAA0031666.1 uncharacterized protein E6C27_scaffold139G004460 [Cucumis melo var. makuwa]1.5e-7839.27Show/hide
Query:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL
        +LG  + GK LI+YIA QERSL AL  QE+EKGKE +LYYLSR L+G EVNYS IK MCLALFF I+K RHYMQAFTVHLVAKADP+KY+  RPII  RL
Subjt:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL

Query:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE---------------------GLGLG--------------------------
        AKWAILLQQYDIVYI +KAI+GQ L D LADH IPS WKLCEDL DDE                     G G G                          
Subjt:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE---------------------GLGLG--------------------------

Query:  ----------------------------------------------------------DSIWL-------------------------------------
                                                                  DS+ L                                     
Subjt:  ----------------------------------------------------------DSIWL-------------------------------------

Query:  ------------------------------------------------------------------ASITPKSSKGHLYILATIDYFSRWAESIPLREAK
                                                                            IT KSS GH YILA  DYFS+WAE+IPLREAK
Subjt:  ------------------------------------------------------------------ASITPKSSKGHLYILATIDYFSRWAESIPLREAK

Query:  KQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKERIGETLWAYCTTHRTP
        K+NV  FIR H+IYRY IP  I+ DNG KF NS                                       KI+SKSKR W+ERI E L          
Subjt:  KQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKERIGETLWAYCTTHRTP

Query:  TRLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLA
          +E LDE+RLEAQQALECYQARMSKAFDKHVKPRSF VG+LVLA
Subjt:  TRLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLA

KAA0037793.1 uncharacterized protein E6C27_scaffold918G00010 [Cucumis melo var. makuwa]4.4e-8638.31Show/hide
Query:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL
        +LG LV G+ LI+YIA QERSL AL  QE+EKGKE ALYYLS+ L+G EVNYS I+ MCLALFFAI+K RHYMQAFTVHLVAKADP+KY+  RPII  RL
Subjt:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL

Query:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE-------------------------------GLGL------------GDS--
        AKWA++LQQYDIVYI +K I+GQ L DFLADH IPSDWKLCEDL DDE                               GL +            GDS  
Subjt:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE-------------------------------GLGL------------GDS--

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------------------------------IW----LASITPKSSKGHLYILATID
                                                                                   W    +  ITPKSS GH YILA  D
Subjt:  --------------------------------------------------------------------------IW----LASITPKSSKGHLYILATID

Query:  YFSRWAESIPLREAKKQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKER
        YFS+W E+IPLREAKK+NV  FIRTH+IYRY IP RIV DNGR+F NS                                       KI+ KSKR W+ER
Subjt:  YFSRWAESIPLREAKKQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKER

Query:  IGETLWAYCTTHRTPT-------------------------------------------RLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDL
        IGE LWAY TTHRTPT                                            LE LDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDL
Subjt:  IGETLWAYCTTHRTPT-------------------------------------------RLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDL

Query:  VLA
        VLA
Subjt:  VLA

TYK02888.1 uncharacterized protein E5676_scaffold968G00270 [Cucumis melo var. makuwa]4.4e-8638.31Show/hide
Query:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL
        +LG LV G+ LI+YIA QERSL AL  QE+EKGKE ALYYLS+ L+G EVNYS I+ MCLALFFAI+K RHYMQAFTVHLVAKADP+KY+  RPII  RL
Subjt:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL

Query:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE-------------------------------GLGL------------GDS--
        AKWA++LQQYDIVYI +K I+GQ L DFLADH IPSDWKLCEDL DDE                               GL +            GDS  
Subjt:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE-------------------------------GLGL------------GDS--

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------------------------------IW----LASITPKSSKGHLYILATID
                                                                                   W    +  ITPKSS GH YILA  D
Subjt:  --------------------------------------------------------------------------IW----LASITPKSSKGHLYILATID

Query:  YFSRWAESIPLREAKKQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKER
        YFS+W E+IPLREAKK+NV  FIRTH+IYRY IP RIV DNGR+F NS                                       KI+ KSKR W+ER
Subjt:  YFSRWAESIPLREAKKQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKER

Query:  IGETLWAYCTTHRTPT-------------------------------------------RLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDL
        IGE LWAY TTHRTPT                                            LE LDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDL
Subjt:  IGETLWAYCTTHRTPT-------------------------------------------RLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDL

Query:  VLA
        VLA
Subjt:  VLA

TYK04445.1 uncharacterized protein E5676_scaffold409G00440 [Cucumis melo var. makuwa]1.5e-7839.27Show/hide
Query:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL
        +LG  + GK LI+YIA QERSL AL  QE+EKGKE +LYYLSR L+G EVNYS IK MCLALFF I+K RHYMQAFTVHLVAKADP+KY+  RPII  RL
Subjt:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL

Query:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE---------------------GLGLG--------------------------
        AKWAILLQQYDIVYI +KAI+GQ L D LADH IPS WKLCEDL DDE                     G G G                          
Subjt:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE---------------------GLGLG--------------------------

Query:  ----------------------------------------------------------DSIWL-------------------------------------
                                                                  DS+ L                                     
Subjt:  ----------------------------------------------------------DSIWL-------------------------------------

Query:  ------------------------------------------------------------------ASITPKSSKGHLYILATIDYFSRWAESIPLREAK
                                                                            IT KSS GH YILA  DYFS+WAE+IPLREAK
Subjt:  ------------------------------------------------------------------ASITPKSSKGHLYILATIDYFSRWAESIPLREAK

Query:  KQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKERIGETLWAYCTTHRTP
        K+NV  FIR H+IYRY IP  I+ DNG KF NS                                       KI+SKSKR W+ERI E L          
Subjt:  KQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKERIGETLWAYCTTHRTP

Query:  TRLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLA
          +E LDE+RLEAQQALECYQARMSKAFDKHVKPRSF VG+LVLA
Subjt:  TRLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLA

TrEMBL top hitse value%identityAlignment
A0A5A7SLL7 Ribonuclease H3.2e-8235.68Show/hide
Query:  MLGDLVL-----GKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPI
        +L  LVL     GK LI+YIA QE SL AL  QE +KGKECALYYLSR L G E+NYS I+ MCLALFFAI+K RHYMQAFT+HLVAKADP+KYI  RP+
Subjt:  MLGDLVL-----GKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPI

Query:  IFRRLAKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE---------------------GLGLG---------------------
        I  RLAKWAI+LQQYDIVYIP+KA++GQ LADFLADH IPS+WKLC+DL D+E                     G+G+G                     
Subjt:  IFRRLAKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE---------------------GLGLG---------------------

Query:  --DSI--------------------------------------WL-------------------------------------------------------
          DSI                                      W+                                                       
Subjt:  --DSI--------------------------------------WL-------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----ASITPKSSKGHLYILATIDYFSRWAESIPLREAKKQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS-----------------------------
              ITPKSS GH YILA  DYFS+WAE++PL+EAKK+N+V F++TH+IYRY IP RIV DNGR+FPN+                             
Subjt:  ----ASITPKSSKGHLYILATIDYFSRWAESIPLREAKKQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS-----------------------------

Query:  ----------KIISKSKRGWKERIGETLWAYCTTHRTPT-------------------------------------------RLETLDEKRLEAQQALEC
                  K++SK+KR W+E+IGE LWAY TTHRTPT                                            LE LDEKRLEAQQALEC
Subjt:  ----------KIISKSKRGWKERIGETLWAYCTTHRTPT-------------------------------------------RLETLDEKRLEAQQALEC

Query:  YQARMSKAFDKHVKPRSFQVGDLVL
        YQARMSKAFDK V+PRSFQVGDLVL
Subjt:  YQARMSKAFDKHVKPRSFQVGDLVL

A0A5A7SNS2 Ribonuclease H7.3e-7939.27Show/hide
Query:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL
        +LG  + GK LI+YIA QERSL AL  QE+EKGKE +LYYLSR L+G EVNYS IK MCLALFF I+K RHYMQAFTVHLVAKADP+KY+  RPII  RL
Subjt:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL

Query:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE---------------------GLGLG--------------------------
        AKWAILLQQYDIVYI +KAI+GQ L D LADH IPS WKLCEDL DDE                     G G G                          
Subjt:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE---------------------GLGLG--------------------------

Query:  ----------------------------------------------------------DSIWL-------------------------------------
                                                                  DS+ L                                     
Subjt:  ----------------------------------------------------------DSIWL-------------------------------------

Query:  ------------------------------------------------------------------ASITPKSSKGHLYILATIDYFSRWAESIPLREAK
                                                                            IT KSS GH YILA  DYFS+WAE+IPLREAK
Subjt:  ------------------------------------------------------------------ASITPKSSKGHLYILATIDYFSRWAESIPLREAK

Query:  KQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKERIGETLWAYCTTHRTP
        K+NV  FIR H+IYRY IP  I+ DNG KF NS                                       KI+SKSKR W+ERI E L          
Subjt:  KQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKERIGETLWAYCTTHRTP

Query:  TRLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLA
          +E LDE+RLEAQQALECYQARMSKAFDKHVKPRSF VG+LVLA
Subjt:  TRLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLA

A0A5A7T485 Reverse transcriptase2.1e-8638.31Show/hide
Query:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL
        +LG LV G+ LI+YIA QERSL AL  QE+EKGKE ALYYLS+ L+G EVNYS I+ MCLALFFAI+K RHYMQAFTVHLVAKADP+KY+  RPII  RL
Subjt:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL

Query:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE-------------------------------GLGL------------GDS--
        AKWA++LQQYDIVYI +K I+GQ L DFLADH IPSDWKLCEDL DDE                               GL +            GDS  
Subjt:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE-------------------------------GLGL------------GDS--

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------------------------------IW----LASITPKSSKGHLYILATID
                                                                                   W    +  ITPKSS GH YILA  D
Subjt:  --------------------------------------------------------------------------IW----LASITPKSSKGHLYILATID

Query:  YFSRWAESIPLREAKKQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKER
        YFS+W E+IPLREAKK+NV  FIRTH+IYRY IP RIV DNGR+F NS                                       KI+ KSKR W+ER
Subjt:  YFSRWAESIPLREAKKQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKER

Query:  IGETLWAYCTTHRTPT-------------------------------------------RLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDL
        IGE LWAY TTHRTPT                                            LE LDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDL
Subjt:  IGETLWAYCTTHRTPT-------------------------------------------RLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDL

Query:  VLA
        VLA
Subjt:  VLA

A0A5D3BV77 Reverse transcriptase2.1e-8638.31Show/hide
Query:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL
        +LG LV G+ LI+YIA QERSL AL  QE+EKGKE ALYYLS+ L+G EVNYS I+ MCLALFFAI+K RHYMQAFTVHLVAKADP+KY+  RPII  RL
Subjt:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL

Query:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE-------------------------------GLGL------------GDS--
        AKWA++LQQYDIVYI +K I+GQ L DFLADH IPSDWKLCEDL DDE                               GL +            GDS  
Subjt:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE-------------------------------GLGL------------GDS--

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------------------------------IW----LASITPKSSKGHLYILATID
                                                                                   W    +  ITPKSS GH YILA  D
Subjt:  --------------------------------------------------------------------------IW----LASITPKSSKGHLYILATID

Query:  YFSRWAESIPLREAKKQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKER
        YFS+W E+IPLREAKK+NV  FIRTH+IYRY IP RIV DNGR+F NS                                       KI+ KSKR W+ER
Subjt:  YFSRWAESIPLREAKKQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKER

Query:  IGETLWAYCTTHRTPT-------------------------------------------RLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDL
        IGE LWAY TTHRTPT                                            LE LDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDL
Subjt:  IGETLWAYCTTHRTPT-------------------------------------------RLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDL

Query:  VLA
        VLA
Subjt:  VLA

A0A5D3BZ59 Ribonuclease H7.3e-7939.27Show/hide
Query:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL
        +LG  + GK LI+YIA QERSL AL  QE+EKGKE +LYYLSR L+G EVNYS IK MCLALFF I+K RHYMQAFTVHLVAKADP+KY+  RPII  RL
Subjt:  MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRL

Query:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE---------------------GLGLG--------------------------
        AKWAILLQQYDIVYI +KAI+GQ L D LADH IPS WKLCEDL DDE                     G G G                          
Subjt:  AKWAILLQQYDIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDE---------------------GLGLG--------------------------

Query:  ----------------------------------------------------------DSIWL-------------------------------------
                                                                  DS+ L                                     
Subjt:  ----------------------------------------------------------DSIWL-------------------------------------

Query:  ------------------------------------------------------------------ASITPKSSKGHLYILATIDYFSRWAESIPLREAK
                                                                            IT KSS GH YILA  DYFS+WAE+IPLREAK
Subjt:  ------------------------------------------------------------------ASITPKSSKGHLYILATIDYFSRWAESIPLREAK

Query:  KQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKERIGETLWAYCTTHRTP
        K+NV  FIR H+IYRY IP  I+ DNG KF NS                                       KI+SKSKR W+ERI E L          
Subjt:  KQNVVGFIRTHVIYRYCIPQRIVADNGRKFPNS---------------------------------------KIISKSKRGWKERIGETLWAYCTTHRTP

Query:  TRLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLA
          +E LDE+RLEAQQALECYQARMSKAFDKHVKPRSF VG+LVLA
Subjt:  TRLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGGAGATTTAGTACTTGGCAAGTCATTAATAGTATACATTGCTCCACAAGAAAGATCCTTAAGAGCATTACAGGACCAAGAAGAGGAAAAGGGAAAGGAGTGTGC
TCTCTACTATCTAAGCAGAATATTAATTGGGGTTGAAGTTAACTATTCTTTCATCAAGAATATGTGCCTTGCACTTTTCTTTGCCATTGAAAAGTTTAGGCATTATATGC
AGGCCTTCACGGTTCATCTAGTGGCAAAAGCAGATCCTATGAAGTATATTTTTTTTAGGCCAATCATCTTTAGACGCTTAGCCAAATGGGCTATTCTACTCCAACAATAT
GATATTGTCTATATTCCCAAAAAGGCGATAGAAGGGCAAGTGCTAGCAGACTTTTTAGCAGACCACCTAATTCCTTCAGATTGGAAGTTATGTGAAGATCTGTCAGACGA
TGAGGGTTTAGGACTTGGGGACTCGATCTGGTTGGCCTCCATTACGCCAAAATCATCAAAAGGACATTTATATATCCTTGCAACAATAGACTATTTTTCAAGGTGGGCTG
AGTCCATTCCCTTGAGAGAGGCCAAGAAGCAGAACGTGGTAGGATTTATTCGAACGCACGTTATCTATCGATACTGTATTCCTCAACGAATCGTGGCGGATAATGGAAGG
AAATTTCCCAATAGCAAAATTATCTCCAAGTCAAAGAGGGGTTGGAAAGAAAGGATCGGTGAGACATTGTGGGCTTACTGCACTACTCATCGCACTCCTACAAGATTAGA
AACACTTGATGAAAAGAGATTAGAGGCTCAACAAGCATTAGAATGTTATCAAGCGAGAATGTCCAAAGCGTTTGATAAGCACGTTAAACCTCGCTCATTTCAGGTTGGTG
ATCTAGTACTTGCT
mRNA sequenceShow/hide mRNA sequence
ATGCTAGGAGATTTAGTACTTGGCAAGTCATTAATAGTATACATTGCTCCACAAGAAAGATCCTTAAGAGCATTACAGGACCAAGAAGAGGAAAAGGGAAAGGAGTGTGC
TCTCTACTATCTAAGCAGAATATTAATTGGGGTTGAAGTTAACTATTCTTTCATCAAGAATATGTGCCTTGCACTTTTCTTTGCCATTGAAAAGTTTAGGCATTATATGC
AGGCCTTCACGGTTCATCTAGTGGCAAAAGCAGATCCTATGAAGTATATTTTTTTTAGGCCAATCATCTTTAGACGCTTAGCCAAATGGGCTATTCTACTCCAACAATAT
GATATTGTCTATATTCCCAAAAAGGCGATAGAAGGGCAAGTGCTAGCAGACTTTTTAGCAGACCACCTAATTCCTTCAGATTGGAAGTTATGTGAAGATCTGTCAGACGA
TGAGGGTTTAGGACTTGGGGACTCGATCTGGTTGGCCTCCATTACGCCAAAATCATCAAAAGGACATTTATATATCCTTGCAACAATAGACTATTTTTCAAGGTGGGCTG
AGTCCATTCCCTTGAGAGAGGCCAAGAAGCAGAACGTGGTAGGATTTATTCGAACGCACGTTATCTATCGATACTGTATTCCTCAACGAATCGTGGCGGATAATGGAAGG
AAATTTCCCAATAGCAAAATTATCTCCAAGTCAAAGAGGGGTTGGAAAGAAAGGATCGGTGAGACATTGTGGGCTTACTGCACTACTCATCGCACTCCTACAAGATTAGA
AACACTTGATGAAAAGAGATTAGAGGCTCAACAAGCATTAGAATGTTATCAAGCGAGAATGTCCAAAGCGTTTGATAAGCACGTTAAACCTCGCTCATTTCAGGTTGGTG
ATCTAGTACTTGCT
Protein sequenceShow/hide protein sequence
MLGDLVLGKSLIVYIAPQERSLRALQDQEEEKGKECALYYLSRILIGVEVNYSFIKNMCLALFFAIEKFRHYMQAFTVHLVAKADPMKYIFFRPIIFRRLAKWAILLQQY
DIVYIPKKAIEGQVLADFLADHLIPSDWKLCEDLSDDEGLGLGDSIWLASITPKSSKGHLYILATIDYFSRWAESIPLREAKKQNVVGFIRTHVIYRYCIPQRIVADNGR
KFPNSKIISKSKRGWKERIGETLWAYCTTHRTPTRLETLDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLA