; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G33960 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G33960
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibonuclease H
Genome locationChr1:28916197..28916694
RNA-Seq ExpressionCSPI01G33960
SyntenyCSPI01G33960
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051588.1 uncharacterized protein E6C27_scaffold174G001310 [Cucumis melo var. makuwa]2.9e-5580.88Show/hide
Query:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK
        ++MT FRTPKGIY YKVMPFGLKN GATYQ AMQKVFD+MLHK VE YV+DLVVKSK++QDHLK +KVVF+RLR YQLR NPLKC FGVTS KFLGFIV+
Subjt:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK

Query:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI
        H+GIEIDQSKID IQKMP PK LH L+SLQGRLAYI
Subjt:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI

KAA0062537.1 uncharacterized protein E6C27_scaffold79G00080 [Cucumis melo var. makuwa]5.0e-5580.15Show/hide
Query:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK
        ++MT FRTPKGIY YKVMPFGLKN GATYQ AMQKVFD+MLHK VE YV+DLVVKSK++QDHLK +KVVF+RLR YQLR NPLKC FG+TS KFLGFIV+
Subjt:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK

Query:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI
        H+GIEIDQSKID IQKMP PK LH L+SLQGRLAYI
Subjt:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI

KAA0065979.1 uncharacterized protein E6C27_scaffold62G00640 [Cucumis melo var. makuwa]1.9e-5479.41Show/hide
Query:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK
        +++T FRTPKGIY YKVMPFGLKN GATYQ AMQKVFD+MLHK VE Y +DLVVKSK++QDHLK +KVVF+RLR YQLR NPLKC FGVTS KFLGFIV+
Subjt:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK

Query:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI
        H+GIEIDQSKID IQKMP PK LH L+SLQGRLAYI
Subjt:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI

TYK28756.1 uncharacterized protein E5676_scaffold403G001090 [Cucumis melo var. makuwa]5.0e-5580.15Show/hide
Query:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK
        ++MT FRTPKGIY YKVMPFGLKN GATYQ AMQKVFD+MLHK VE YV+DLVVKSK++QDHLK +KVVF+RLR YQLR NPLKC FG+TS KFLGFIV+
Subjt:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK

Query:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI
        H+GIEIDQSKID IQKMP PK LH L+SLQGRLAYI
Subjt:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI

TYK28924.1 uncharacterized protein E5676_scaffold120G00050 [Cucumis melo var. makuwa]1.9e-5479.41Show/hide
Query:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK
        +++T FRTPKGIY YKVMPFGLKN GATYQ AMQKVFD+MLHK VE Y +DLVVKSK++QDHLK +KVVF+RLR YQLR NPLKC FGVTS KFLGFIV+
Subjt:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK

Query:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI
        H+GIEIDQSKID IQKMP PK LH L+SLQGRLAYI
Subjt:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI

TrEMBL top hitse value%identityAlignment
A0A5A7U8J5 Ribonuclease H1.4e-5580.88Show/hide
Query:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK
        ++MT FRTPKGIY YKVMPFGLKN GATYQ AMQKVFD+MLHK VE YV+DLVVKSK++QDHLK +KVVF+RLR YQLR NPLKC FGVTS KFLGFIV+
Subjt:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK

Query:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI
        H+GIEIDQSKID IQKMP PK LH L+SLQGRLAYI
Subjt:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI

A0A5A7V6G6 Reverse transcriptase domain-containing protein2.4e-5580.15Show/hide
Query:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK
        ++MT FRTPKGIY YKVMPFGLKN GATYQ AMQKVFD+MLHK VE YV+DLVVKSK++QDHLK +KVVF+RLR YQLR NPLKC FG+TS KFLGFIV+
Subjt:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK

Query:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI
        H+GIEIDQSKID IQKMP PK LH L+SLQGRLAYI
Subjt:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI

A0A5A7VKY8 Uncharacterized protein9.2e-5579.41Show/hide
Query:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK
        +++T FRTPKGIY YKVMPFGLKN GATYQ AMQKVFD+MLHK VE Y +DLVVKSK++QDHLK +KVVF+RLR YQLR NPLKC FGVTS KFLGFIV+
Subjt:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK

Query:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI
        H+GIEIDQSKID IQKMP PK LH L+SLQGRLAYI
Subjt:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI

A0A5D3DYG9 Reverse transcriptase domain-containing protein2.4e-5580.15Show/hide
Query:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK
        ++MT FRTPKGIY YKVMPFGLKN GATYQ AMQKVFD+MLHK VE YV+DLVVKSK++QDHLK +KVVF+RLR YQLR NPLKC FG+TS KFLGFIV+
Subjt:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK

Query:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI
        H+GIEIDQSKID IQKMP PK LH L+SLQGRLAYI
Subjt:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI

A0A5D3DZI7 Uncharacterized protein9.2e-5579.41Show/hide
Query:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK
        +++T FRTPKGIY YKVMPFGLKN GATYQ AMQKVFD+MLHK VE Y +DLVVKSK++QDHLK +KVVF+RLR YQLR NPLKC FGVTS KFLGFIV+
Subjt:  KDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVK

Query:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI
        H+GIEIDQSKID IQKMP PK LH L+SLQGRLAYI
Subjt:  HQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.1e-1629.77Show/hide
Query:  FRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVKHQGIE
        FR P+G++ Y VMP+G+    A +Q+ +  +        V  Y++D+++ SK + +H+K++K V  +L+N  L  N  KC F  +  KF+G+ +  +G  
Subjt:  FRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVKHQGIE

Query:  IDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI
          Q  ID + +   PK    L+   G + Y+
Subjt:  IDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI

P0CT35 Transposon Tf2-2 polyprotein2.1e-1629.77Show/hide
Query:  FRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVKHQGIE
        FR P+G++ Y VMP+G+    A +Q+ +  +        V  Y++D+++ SK + +H+K++K V  +L+N  L  N  KC F  +  KF+G+ +  +G  
Subjt:  FRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVKHQGIE

Query:  IDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI
          Q  ID + +   PK    L+   G + Y+
Subjt:  IDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI

P0CT36 Transposon Tf2-3 polyprotein2.1e-1629.77Show/hide
Query:  FRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVKHQGIE
        FR P+G++ Y VMP+G+    A +Q+ +  +        V  Y++D+++ SK + +H+K++K V  +L+N  L  N  KC F  +  KF+G+ +  +G  
Subjt:  FRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVKHQGIE

Query:  IDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI
          Q  ID + +   PK    L+   G + Y+
Subjt:  IDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI

P0CT37 Transposon Tf2-4 polyprotein2.1e-1629.77Show/hide
Query:  FRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVKHQGIE
        FR P+G++ Y VMP+G+    A +Q+ +  +        V  Y++D+++ SK + +H+K++K V  +L+N  L  N  KC F  +  KF+G+ +  +G  
Subjt:  FRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVKHQGIE

Query:  IDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI
          Q  ID + +   PK    L+   G + Y+
Subjt:  IDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI

P0CT41 Transposon Tf2-12 polyprotein2.1e-1629.77Show/hide
Query:  FRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVKHQGIE
        FR P+G++ Y VMP+G+    A +Q+ +  +        V  Y++D+++ SK + +H+K++K V  +L+N  L  N  KC F  +  KF+G+ +  +G  
Subjt:  FRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSNPLKCVFGVTSEKFLGFIVKHQGIE

Query:  IDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI
          Q  ID + +   PK    L+   G + Y+
Subjt:  IDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATCCAACTACGGAACACAAAGCATTGTCATTTATGGATGGATCGTCTGGACATAACCAAATACGAATGGAACTTTCAAATGAAGGACATGACAACTTTCAGGAC
TCCAAAGGGAATATACTATTACAAGGTGATGCCATTTGGATTGAAAAATGATGGTGCTACTTATCAACACGCTATGCAGAAAGTGTTTGATAATATGTTGCATAAGCCTG
TCGAATTCTATGTTAATGACCTTGTGGTCAAATCCAAGAAACAACAAGATCATTTGAAGTATATAAAAGTTGTGTTCAACCGCTTGCGAAATTATCAATTGAGGAGTAAC
CCTCTCAAGTGTGTGTTTGGTGTGACTTCAGAAAAGTTTCTTGGCTTCATTGTAAAACACCAAGGGATCGAAATAGACCAGTCTAAGATTGATGACATTCAAAAGATGCC
AAGCCCAAAAGGTTTGCATGGCCTAAAAAGTCTCCAAGGACGATTGGCTTACATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATATCCAACTACGGAACACAAAGCATTGTCATTTATGGATGGATCGTCTGGACATAACCAAATACGAATGGAACTTTCAAATGAAGGACATGACAACTTTCAGGAC
TCCAAAGGGAATATACTATTACAAGGTGATGCCATTTGGATTGAAAAATGATGGTGCTACTTATCAACACGCTATGCAGAAAGTGTTTGATAATATGTTGCATAAGCCTG
TCGAATTCTATGTTAATGACCTTGTGGTCAAATCCAAGAAACAACAAGATCATTTGAAGTATATAAAAGTTGTGTTCAACCGCTTGCGAAATTATCAATTGAGGAGTAAC
CCTCTCAAGTGTGTGTTTGGTGTGACTTCAGAAAAGTTTCTTGGCTTCATTGTAAAACACCAAGGGATCGAAATAGACCAGTCTAAGATTGATGACATTCAAAAGATGCC
AAGCCCAAAAGGTTTGCATGGCCTAAAAAGTCTCCAAGGACGATTGGCTTACATCTGA
Protein sequenceShow/hide protein sequence
MDIQLRNTKHCHLWMDRLDITKYEWNFQMKDMTTFRTPKGIYYYKVMPFGLKNDGATYQHAMQKVFDNMLHKPVEFYVNDLVVKSKKQQDHLKYIKVVFNRLRNYQLRSN
PLKCVFGVTSEKFLGFIVKHQGIEIDQSKIDDIQKMPSPKGLHGLKSLQGRLAYI