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CSPI01G34450 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G34450
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionmediator of RNA polymerase II transcription subunit 22b-like
Genome locationChr1:29357463..29359800
RNA-Seq ExpressionCSPI01G34450
SyntenyCSPI01G34450
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR009332 - Mediator of RNA polymerase II transcription subunit 22


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029838.1 Mediator of RNA polymerase II transcription subunit 22b [Cucurbita argyrosperma subsp. argyrosperma]8.0e-6894.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT
        VEQRIVEFNQQA+QTDR+LS+IGEEAA  LKELESHYYSSTQRT Q+SLT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT

XP_004145443.1 mediator of RNA polymerase II transcription subunit 22b [Cucumis sativus]5.9e-7199.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT
        VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQ+SLT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT

XP_008459037.1 PREDICTED: mediator of RNA polymerase II transcription subunit 22a-like isoform X1 [Cucumis melo]3.8e-7098Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT
        VEQRIVEFNQQAQQT+RLLSRIGEEAAANLKELESHYYSSTQRTDQ++LT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT

XP_008459039.1 PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like isoform X2 [Cucumis melo]3.8e-7098Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT
        VEQRIVEFNQQAQQT+RLLSRIGEEAAANLKELESHYYSSTQRTDQ++LT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT

XP_038891249.1 mediator of RNA polymerase II transcription subunit 22b-like [Benincasa hispida]6.1e-6896Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGG GPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT
        VEQRIVEFNQQAQQTDRLLS IGEEAAA+LKELESHYYSSTQRT Q++LT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT

TrEMBL top hitse value%identityAlignment
A0A0A0M174 Uncharacterized protein2.9e-7199.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT
        VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQ+SLT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT

A0A1S3C993 mediator of RNA polymerase II transcription subunit 22b-like isoform X21.8e-7098Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT
        VEQRIVEFNQQAQQT+RLLSRIGEEAAANLKELESHYYSSTQRTDQ++LT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT

A0A1S3CAG5 mediator of RNA polymerase II transcription subunit 22a-like isoform X11.8e-7098Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT
        VEQRIVEFNQQAQQT+RLLSRIGEEAAANLKELESHYYSSTQRTDQ++LT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT

A0A5A7TMC4 Mediator of RNA polymerase II transcription subunit 22a-like isoform X11.8e-7098Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT
        VEQRIVEFNQQAQQT+RLLSRIGEEAAANLKELESHYYSSTQRTDQ++LT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT

A0A6J1DR20 mediator of RNA polymerase II transcription subunit 22b-like1.9e-6794Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT
        VEQRIVEFNQQA+QTDRLLSRIGEEAA +LKELESHYYSSTQRT Q+ LT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT

SwissProt top hitse value%identityAlignment
A0JPN6 Mediator of RNA polymerase II transcription subunit 224.8e-1535.77Show/hide
Query:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSST
          +     ++ DR L  + +E + +L ELE  YYSS+
Subjt:  IVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSST

Q5E9K2 Mediator of RNA polymerase II transcription subunit 226.2e-1535.04Show/hide
Query:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ D+ +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSST
          +     ++ DR L  + +E + +L ELE  YYSS+
Subjt:  IVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSST

Q62276 Mediator of RNA polymerase II transcription subunit 224.8e-1535.77Show/hide
Query:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSST
          +     ++ DR L  + +E + +L ELE  YYSS+
Subjt:  IVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSST

Q8LCH5 Mediator of RNA polymerase II transcription subunit 22b3.3e-5681.43Show/hide
Query:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQR
        RI EF+Q+A++T+RLL+RI ++A+ANLKELESHYYSS QR
Subjt:  RIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQR

Q9SA42 Mediator of RNA polymerase II transcription subunit 22a1.8e-5476.03Show/hide
Query:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN
        MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASLN
Subjt:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN

Query:  DHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRT
        DHVEQRI EF+Q+A++T+RLL+RI ++A+A+LKELESHYYSS QR+
Subjt:  DHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRT

Arabidopsis top hitse value%identityAlignment
AT1G07950.1 Surfeit locus protein 5 subunit 22 of Mediator complex2.3e-5781.43Show/hide
Query:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQR
        RI EF+Q+A++T+RLL+RI ++A+ANLKELESHYYSS QR
Subjt:  RIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQR

AT1G16430.1 Surfeit locus protein 5 subunit 22 of Mediator complex1.3e-5576.03Show/hide
Query:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN
        MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASLN
Subjt:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN

Query:  DHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRT
        DHVEQRI EF+Q+A++T+RLL+RI ++A+A+LKELESHYYSS QR+
Subjt:  DHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAAGGCATCGGTGGTGGAACTGGCCCCACTGCAGCGGCTGCGGCGGCGGCAGCTCAGAAGCAGAAACTGCTTCTCCAGAGAGTGGAAACTGATATAGCCAATAT
TGTTGACAATTTCACTCATCTTGTCAACGTCTCTAGAGTGAACGATCCACCAGTTAGAAACTCACAAGAATCTTTCATGATGGAAATGCGTGCGGCCAGAATGGTTCAGG
CAGCTGATTCTCTGCTGAAGTTGGTTTCAGAACTTAAGCAGACAGCAATATTTTCTGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATTGTGGAATTCAATCAG
CAGGCACAACAGACTGACCGTCTTTTATCTAGAATTGGTGAAGAAGCTGCTGCCAATTTGAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGAACTGATCAGAG
CAGCCTGACGTGA
mRNA sequenceShow/hide mRNA sequence
AAATTTTTGTCAGAGCCCATTAACGACCCATATCTAAGCCCATCTCAACTATTGAATTCCAATCGGTGTCTAGGGCTTCGTCATCCTCTGTTCGTGTTGCTTTTTTGTAA
CGCCGGCGACGCCCATAAGCTCCGACCATCGACACGGCCACACCTTCCACGAACTATCACCGACGACGTTCCACCAGAGTTTTTCTCCATTTTTGTCGACGTGTTATAGA
CCCACTCTCATTCAACCTCAAATTTGAGTTTCCCATTTCTTAATTGAATTGATTCAATTCCCATTTCTATCTATTATTATGAACAAAGGCATCGGTGGTGGAACTGGCCC
CACTGCAGCGGCTGCGGCGGCGGCAGCTCAGAAGCAGAAACTGCTTCTCCAGAGAGTGGAAACTGATATAGCCAATATTGTTGACAATTTCACTCATCTTGTCAACGTCT
CTAGAGTGAACGATCCACCAGTTAGAAACTCACAAGAATCTTTCATGATGGAAATGCGTGCGGCCAGAATGGTTCAGGCAGCTGATTCTCTGCTGAAGTTGGTTTCAGAA
CTTAAGCAGACAGCAATATTTTCTGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATTGTGGAATTCAATCAGCAGGCACAACAGACTGACCGTCTTTTATCTAG
AATTGGTGAAGAAGCTGCTGCCAATTTGAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGAACTGATCAGAGCAGCCTGACGTGATTTAGAGTGGAAAGTGGAA
TTAATGATGTGATACTGTTGGCTTCTAAACTCAGTTGCTTGCTAACATGGATAATGAAACGTAATATAACACTTCTAACTTTTTCTCTCGTTTTACTATAACTTCCTTCT
TCACTTGAAAGTGCCTCAAAAAATAGCAAACATGATAGGAAATAAGTAACTCATTCCGTTGTCTGAATTAATTCAGAGAGGACGAAACATGTATGTTGACTTTGGC
Protein sequenceShow/hide protein sequence
MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQ
QAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQSSLT