CuGenDBv2

Gene ID	CSPI01G34730
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	ribonuclease H2 subunit C
Genome location	Chr1:29781655..29785048
RNA-Seq Expression	CSPI01G34730
Synteny	CSPI01G34730
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0032299 - ribonuclease H2 complex (cellular component) GO:0016757 - transferase activity, transferring glycosyl groups (molecular function)
InterPro domains	IPR013924 - Ribonuclease H2, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]

3.8e-71

79.76

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K
        M+ +NERK EVIV  DFDFG+D  A+D+SGKVHQLPC +KFDGPC VS YFKPKSTGIEVDGL++E AYFRGRKLQGATISLPEGYSGYV+G+KS    K
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K

Query:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        ASE+  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS ALKN+S
Subjt:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

XP_008459055.1 PREDICTED: uncharacterized protein C12B10.15c [Cucumis melo]

8.7e-84

90.48

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGK----KSK
        MN QN RKGE  VDFDFDFG+DPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLN+EEAYFRGRKLQGATISLPEGYSGYVLGK    KSK
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGK----KSK

Query:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        +S+QCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Subjt:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

XP_011660323.1 uncharacterized protein C12B10.15c [Cucumis sativus]

2.5e-91

100

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSKASEQ
        MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSKASEQ
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSKASEQ

Query:  CDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        CDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
Subjt:  CDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]

1.9e-70

79.17

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K
        M+ + ERK EVIV  DFDFG+D  A+D+SGKVHQLPC +KFDGPC VS YFKPKSTGIEVDGL++E AYFRGRKLQGATISLPEGYSGYV+G+KS    K
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K

Query:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        ASE+  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS ALKN+S
Subjt:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]

2.8e-74

85.12

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K
        MN +NERKGEVIVDFDF+  +D  ALD+SGKVHQLPC IKFDGPC VS YFKPKSTGIE DGL++EEAYFRGRKLQGATISLPEGYSGYVLGKKS    K
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K

Query:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        ASEQ  +SSPWQVKAKF NITYWNHDTLPSQDDTFQR+FHWLTVAQALHKPVTAEDLASASTALKN+S
Subjt:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M1A2 Uncharacterized protein

1.2e-91

100

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSKASEQ
        MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSKASEQ
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSKASEQ

Query:  CDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        CDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
Subjt:  CDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

A0A1S3C9A8 uncharacterized protein C12B10.15c

4.2e-84

90.48

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGK----KSK
        MN QN RKGE  VDFDFDFG+DPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLN+EEAYFRGRKLQGATISLPEGYSGYVLGK    KSK
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGK----KSK

Query:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        +S+QCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Subjt:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X2

4.2e-84

90.48

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGK----KSK
        MN QN RKGE  VDFDFDFG+DPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLN+EEAYFRGRKLQGATISLPEGYSGYVLGK    KSK
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGK----KSK

Query:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        +S+QCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Subjt:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

A0A6J1EN41 uncharacterized protein C12B10.15c

9.1e-71

79.17

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K
        M+ + ERK EVIV  DFDFG+D  A+D+SGKVHQLPC +KFDGPC VS YFKPKSTGIEVDGL++E AYFRGRKLQGATISLPEGYSGYV+G+KS    K
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K

Query:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        ASE+  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS ALKN+S
Subjt:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

A0A6J1KH29 uncharacterized protein C12B10.15c

2.6e-70

78.57

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Query:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K
        M+ + ERK EVIV  DFDFG+D  A+D+SGKVHQLPC +KFDGPC VS YFKPKSTGIEVDGL+++ AYFRGRKLQGATISLPEGY GYV+G+KS    K
Subjt:  MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----K

Query:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        ASE+  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA ASTALKN+S
Subjt:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

SwissProt top hits

e value

%identity

Alignment

Q10448 Uncharacterized protein C12B10.15c

4.3e-09

32.2

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Query:  KVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVL-----GKKSKASEQCDDSSPWQVKAKFDNITYWNHDTL-
        K   LPC I +DGP PV  YF  K   I  +  +      RGR+L G  + LPE Y+G V+      +  + SE+    S W + + F+ +  WN D + 
Subjt:  KVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVL-----GKKSKASEQCDDSSPWQVKAKFDNITYWNHDTL-

Query:  PSQDDTFQR-TFHWLTVA
         S+ D ++R    W+  A
Subjt:  PSQDDTFQR-TFHWLTVA

Q8TDP1 Ribonuclease H2 subunit C

7.3e-09

27.66

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Query:  ISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYV---------LGKKSKASEQCDDSSPWQ----------
        +   +H LPC +  DGP PV  +F P        G    E  FRGR L+G  +++P G  GYV         +GK     +   D    +          
Subjt:  ISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYV---------LGKKSKASEQCDDSSPWQ----------

Query:  -VKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPV
           A F   T W  +T+P  D   +    W ++A A+H  V
Subjt:  -VKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

7.9e-51

59.62

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Query:  DFDFGTDPKAL-DISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGK--------KSKASEQCDDSSP
        DF    D  ++ D+S +VHQLPC I+FDGP  VSHYFKPKS+ +E+DG+  EEA+FRGRKLQGATISLP GYSG+VL +        K KAS   +D+  
Subjt:  DFDFGTDPKAL-DISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGK--------KSKASEQCDDSSP

Query:  WQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKN
        W+VKAKF+N+TYWNHD+LPS+DDTF R+FHW ++A+ALHKPV  EDL + S   KN
Subjt:  WQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKN

Sequences

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CDS sequence

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ATGAATGATCAAAACGAGAGGAAAGGGGAAGTAATCGTCGATTTTGATTTTGATTTTGGGACTGACCCTAAAGCTTTAGATATCAGTGGCAAAGTTCATCAGCTTCCCTG
TACCATCAAATTCGATGGTCCTTGCCCTGTTTCTCATTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAATCTTGAGGAAGCTTATTTTAGAGGAAGAA
AGTTGCAAGGAGCTACAATTTCTCTTCCGGAGGGTTACTCAGGCTATGTGCTAGGGAAGAAGAGTAAAGCTTCTGAACAGTGTGATGACTCAAGCCCTTGGCAGGTGAAG
GCCAAATTTGATAACATTACATATTGGAACCATGACACCCTGCCGTCACAAGATGATACCTTCCAACGTACTTTTCATTGGCTGACCGTTGCACAAGCATTGCACAAACC
TGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACTTGAGTTGA

mRNA sequence

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GAAAAAGAAGAAAAACAAAAAAACAATTTGGAGCCGGAAAATGTTAGTCGACGATCGATTCTCATTTCTCAGTCTTCAAAAGAGCGGGAAACATAGAATCTGAAATATAA
TACAAATGGTCGATTGAATTTCCTACCCAGAAATCCGAGGCATCAACGTGGGTTTGTTTAGGGTTTTTCACTTTTAGGTTTGCTTTATAATCAATCAAATGAATGATCAA
AACGAGAGGAAAGGGGAAGTAATCGTCGATTTTGATTTTGATTTTGGGACTGACCCTAAAGCTTTAGATATCAGTGGCAAAGTTCATCAGCTTCCCTGTACCATCAAATT
CGATGGTCCTTGCCCTGTTTCTCATTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAATCTTGAGGAAGCTTATTTTAGAGGAAGAAAGTTGCAAGGAG
CTACAATTTCTCTTCCGGAGGGTTACTCAGGCTATGTGCTAGGGAAGAAGAGTAAAGCTTCTGAACAGTGTGATGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAT
AACATTACATATTGGAACCATGACACCCTGCCGTCACAAGATGATACCTTCCAACGTACTTTTCATTGGCTGACCGTTGCACAAGCATTGCACAAACCTGTAACAGCAGA
AGACTTGGCATCTGCATCTACTGCTCTCAAGAACTTGAGTTGATTAGGTTTAGGATCATGTGTCTGAGAAGAAAACTTCAAGAGACTTAGAATTGTTCCATTCTACTTCG
ATTTGTATTTGATGTAAATTGTTATCTATCTTACCAATTTACTTGATGGGTATGGCATTTTAAACCATAATGTCACTGAAAGATTTTTTTTTTCTTTTCAATTTCAAACA
ATTGTTGTAATACTATAAACATGATTTACATTGTAAGTCTTTCCCGTCCCTATGAG

Protein sequence

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MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKSKASEQCDDSSPWQVK
AKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

CSPI01G34730 (gene) of Cucumber (PI 183967) v1 genome