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CSPI02G00050 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G00050
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDEAD-box ATP-dependent RNA helicase
Genome locationChr2:77225..78713
RNA-Seq ExpressionCSPI02G00050
SyntenyCSPI02G00050
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR011545 - DEAD/DEAH box helicase domain
IPR014014 - RNA helicase, DEAD-box type, Q motif
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141076.1 DEAD-box ATP-dependent RNA helicase 17 [Cucumis sativus]1.3e-5098.15Show/hide
Query:  MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ
        MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ
Subjt:  MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ

Query:  RADGTFGV
        RADGTF +
Subjt:  RADGTFGV

XP_008460014.1 PREDICTED: DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucumis melo]1.1e-4792.59Show/hide
Query:  MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ
        MSSSI+Y NEGVKTT KKMVKEGE+FASCTFASLGLD TLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKS RRTQ
Subjt:  MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ

Query:  RADGTFGV
        RADGTF +
Subjt:  RADGTFGV

XP_008460023.1 PREDICTED: DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucumis melo]1.2e-4893.52Show/hide
Query:  MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ
        MSSSI+Y NEGVKTT KKMVKEGE+FASCTFASLGLD TLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKS RRTQ
Subjt:  MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ

Query:  RADGTFGV
        RADGTFG+
Subjt:  RADGTFGV

XP_022946513.1 DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita moschata]1.9e-4189Show/hide
Query:  NEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV
        NEG+KTTTKKMVKE E+FASCTFASLGL +TLCD+LRDKMGFEVPTLVQAQAIPAILS RHVLVNAATGTGKTVAYLVPIIHHLQKS RR QRADGTF +
Subjt:  NEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV

XP_038890369.1 DEAD-box ATP-dependent RNA helicase 17-like [Benincasa hispida]1.1e-4487.96Show/hide
Query:  MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ
        MS S KY NEG+K+TTKKMVKE E+FASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHH+ KS RR Q
Subjt:  MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ

Query:  RADGTFGV
        RADGTF +
Subjt:  RADGTFGV

TrEMBL top hitse value%identityAlignment
A0A0A0LKK2 Q_MOTIF domain-containing protein5.8e-52100Show/hide
Query:  MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ
        MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ
Subjt:  MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ

Query:  RADGTFGV
        RADGTFGV
Subjt:  RADGTFGV

A0A1S3CB30 DEAD-box ATP-dependent RNA helicase 17 isoform X15.1e-4892.59Show/hide
Query:  MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ
        MSSSI+Y NEGVKTT KKMVKEGE+FASCTFASLGLD TLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKS RRTQ
Subjt:  MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ

Query:  RADGTFGV
        RADGTF +
Subjt:  RADGTFGV

A0A1S3CCT2 DEAD-box ATP-dependent RNA helicase 17 isoform X26.0e-4993.52Show/hide
Query:  MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ
        MSSSI+Y NEGVKTT KKMVKEGE+FASCTFASLGLD TLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKS RRTQ
Subjt:  MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ

Query:  RADGTFGV
        RADGTFG+
Subjt:  RADGTFGV

A0A6J1G419 DEAD-box ATP-dependent RNA helicase 17 isoform X29.3e-4289Show/hide
Query:  NEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV
        NEG+KTTTKKMVKE E+FASCTFASLGL +TLCD+LRDKMGFEVPTLVQAQAIPAILS RHVLVNAATGTGKTVAYLVPIIHHLQKS RR QRADGTF +
Subjt:  NEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV

A0A6J1G427 DEAD-box ATP-dependent RNA helicase 17 isoform X19.3e-4289Show/hide
Query:  NEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV
        NEG+KTTTKKMVKE E+FASCTFASLGL +TLCD+LRDKMGFEVPTLVQAQAIPAILS RHVLVNAATGTGKTVAYLVPIIHHLQKS RR QRADGTF +
Subjt:  NEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV

SwissProt top hitse value%identityAlignment
A6SNX1 ATP-dependent RNA helicase dbp96.3e-1153.85Show/hide
Query:  TFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQK
        TFASLGLD+ L   +  K  F+ PTLVQ++AIP  L  R +L  A TG+GKT AYL+PI+H + K
Subjt:  TFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQK

A7EM78 ATP-dependent RNA helicase dbp96.3e-1153.85Show/hide
Query:  TFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQK
        TFASLGLD+ L   +  K  F+ PTLVQ++AIP  L  R +L  A TG+GKT AYL+PI+H + K
Subjt:  TFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQK

Q0DLB9 DEAD-box ATP-dependent RNA helicase 172.9e-2457.14Show/hide
Query:  GVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV
        G     K+  KEG +FASC+F  LGL  TLC  L+DKMGF+ PT +QAQAIP  +S +H+LV AATGTGKT+AYL PI+H LQ    R +R DGTF +
Subjt:  GVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV

Q7XJN0 DEAD-box ATP-dependent RNA helicase 172.4e-2659.05Show/hide
Query:  SIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRAD
        S + T +  K  +K   K G +FASC+F+SLGLD+ L DQL+++MGFE PTLVQAQAIP ILS R VLVNA TGTGKT+AYL P+IHHLQ  + +  R+ 
Subjt:  SIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRAD

Query:  GTFGV
        GTF +
Subjt:  GTFGV

Q9H8H2 Probable ATP-dependent RNA helicase DDX318.2e-1131.69Show/hide
Query:  SSSIKYTNEGVKTTTKKMVK--EGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRT
        +SS+   N  +    + +VK  + +VF S  F  LGL   L   +   +     T VQ Q+IP +L  R  LV + TG+GKT+AY +P++  LQ    + 
Subjt:  SSSIKYTNEGVKTTTKKMVK--EGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRT

Query:  QRADGTFGVGGTLSVIKYRLVATGNHSTQLPLKAIILPFTSI
        QR+DG +     L ++  R +A  +  T   ++ ++ PFT I
Subjt:  QRADGTFGVGGTLSVIKYRLVATGNHSTQLPLKAIILPFTSI

Arabidopsis top hitse value%identityAlignment
AT1G12770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.1e-1037.5Show/hide
Query:  VKTTTKKMVKE-------GEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ
        VK    K+VKE         +F++ +F  LGL  +L D L ++ GF VPT VQ+ A+PAI+     ++ + TG+GKT+AYL+PI+  +   A +++
Subjt:  VKTTTKKMVKE-------GEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ

AT1G59990.1 DEA(D/H)-box RNA helicase family protein3.5e-0941.84Show/hide
Query:  SSIKYTNEGVKTTTKKMVKEGE--VFASCT--FASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSA
        S  K+       T  ++ K+G    FA  T  + SLGL   +   LRD  GF+ P+L QA  IP+ILS + V+V A TG+GKT  YL PII  L  +A
Subjt:  SSIKYTNEGVKTTTKKMVKEGE--VFASCT--FASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSA

AT2G40700.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.7e-2759.05Show/hide
Query:  SIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRAD
        S + T +  K  +K   K G +FASC+F+SLGLD+ L DQL+++MGFE PTLVQAQAIP ILS R VLVNA TGTGKT+AYL P+IHHLQ  + +  R+ 
Subjt:  SIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRAD

Query:  GTFGV
        GTF +
Subjt:  GTFGV

AT2G47330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein3.5e-0939.24Show/hide
Query:  TFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV
        TF   G  S +   ++ K  +E PT +Q QA+P +LS R V+  A TG+GKT A+++P+I H+       QR +G  GV
Subjt:  TFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV

AT4G34910.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.2e-0947.22Show/hide
Query:  KEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHL
        ++ E  A  +F  LGLDS L   L  K G E PTL+Q  AIP IL  + V+  A TG+GKT+AYL+P++  L
Subjt:  KEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGCAGCATCAAATATACCAACGAAGGGGTGAAAACGACAACGAAGAAAATGGTTAAAGAGGGTGAGGTTTTTGCTTCTTGTACTTTCGCCAGCCTCGGTCTGGA
CTCTACTCTATGCGACCAACTCCGAGATAAAATGGGATTTGAAGTTCCTACGCTTGTACAGGCTCAAGCAATTCCGGCTATTTTATCCAGGCGTCATGTTCTTGTTAATG
CTGCCACAGGCACAGGCAAAACTGTCGCATATTTGGTTCCAATCATCCATCACTTACAGAAATCCGCTCGTAGGACTCAGCGGGCTGATGGAACTTTCGGTGTGGGAGGC
ACACTGTCAGTAATCAAGTATCGTCTGGTGGCCACTGGCAATCATTCCACTCAGCTACCTCTCAAGGCAATAATCCTCCCGTTTACTTCCATTGCCACCAAGTCTGGCCG
GAACAAGCTACTTGTTGTCCAACAATGCTACCAAAGCCAGAACAACCTTTACTACGAAAAGACCTATTGCCCAATTCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTAGCAGCATCAAATATACCAACGAAGGGGTGAAAACGACAACGAAGAAAATGGTTAAAGAGGGTGAGGTTTTTGCTTCTTGTACTTTCGCCAGCCTCGGTCTGGA
CTCTACTCTATGCGACCAACTCCGAGATAAAATGGGATTTGAAGTTCCTACGCTTGTACAGGCTCAAGCAATTCCGGCTATTTTATCCAGGCGTCATGTTCTTGTTAATG
CTGCCACAGGCACAGGCAAAACTGTCGCATATTTGGTTCCAATCATCCATCACTTACAGAAATCCGCTCGTAGGACTCAGCGGGCTGATGGAACTTTCGGTGTGGGAGGC
ACACTGTCAGTAATCAAGTATCGTCTGGTGGCCACTGGCAATCATTCCACTCAGCTACCTCTCAAGGCAATAATCCTCCCGTTTACTTCCATTGCCACCAAGTCTGGCCG
GAACAAGCTACTTGTTGTCCAACAATGCTACCAAAGCCAGAACAACCTTTACTACGAAAAGACCTATTGCCCAATTCTCTAA
Protein sequenceShow/hide protein sequence
MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGVGG
TLSVIKYRLVATGNHSTQLPLKAIILPFTSIATKSGRNKLLVVQQCYQSQNNLYYEKTYCPIL