CuGenDBv2

Gene ID	CSPI02G00590
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	40S ribosomal protein S30
Genome location	Chr2:352045..352798
RNA-Seq Expression	CSPI02G00590
Synteny	CSPI02G00590
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0006914 - autophagy (biological process) GO:0015031 - protein transport (biological process) GO:0048208 - COPII vesicle coating (biological process) GO:0000139 - Golgi membrane (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0070971 - endoplasmic reticulum exit site (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004497 - monooxygenase activity (molecular function) GO:0005506 - iron ion binding (molecular function) GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR006846 - Ribosomal protein S30

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

EYU41614.1 hypothetical protein MIMGU_mgv1a016770mg [Erythranthe guttata]

3.3e-25

95.38

Show/hide

Query:  NLHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        N + GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  NLHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

KAB5569678.1 hypothetical protein DKX38_003471 [Salix brachista]

1.9e-25

98.44

Show/hide

Query:  LHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        L SGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  LHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

OEL34214.1 hypothetical protein BAE44_0004765, partial [Dichanthelium oligosanthes]

3.3e-25

96.88

Show/hide

Query:  LHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        L +GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  LHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

RWW18752.1 hypothetical protein GW17_00017242 [Ensete ventricosum]

1.5e-25

86.84

Show/hide

Query:  MFLIYLFLHLCNLHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        +FL+  F    NL SGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRA+KRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  MFLIYLFLHLCNLHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

RZR96505.1 hypothetical protein BHM03_00025534, partial [Ensete ventricosum]

1.5e-25

86.84

Show/hide

Query:  MFLIYLFLHLCNLHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        +FL+  F    NL SGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRA+KRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  MFLIYLFLHLCNLHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

TrEMBL top hits

e value

%identity

Alignment

A0A022RNG9 40S ribosomal protein S30

1.6e-25

95.38

Show/hide

Query:  NLHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        N + GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  NLHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

A0A1E5WA57 40S ribosomal protein S30 (Fragment)

1.6e-25

96.88

Show/hide

Query:  LHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        L +GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  LHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

A0A444F7Y5 40S ribosomal protein S30

7.1e-26

86.84

Show/hide

Query:  MFLIYLFLHLCNLHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        +FL+  F    NL SGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRA+KRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  MFLIYLFLHLCNLHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

A0A5N5NRR1 Uncharacterized protein

9.2e-26

98.44

Show/hide

Query:  LHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        L SGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  LHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

K3Y2S3 40S ribosomal protein S30

1.2e-25

95.38

Show/hide

Query:  NLHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        +L +GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  NLHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

SwissProt top hits

e value

%identity

Alignment

P49689 40S ribosomal protein S30

1.4e-26

96.72

Show/hide

Query:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

P62860 40S ribosomal protein S30

1.8e-18

79.31

Show/hide

Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62861 40S ribosomal protein S30

1.8e-18

79.31

Show/hide

Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62862 40S ribosomal protein S30

1.8e-18

79.31

Show/hide

Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62866 40S ribosomal protein S30

1.8e-18

79.31

Show/hide

Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

Arabidopsis top hits

e value

%identity

Alignment

AT2G19750.1 Ribosomal protein S30 family protein

9.8e-28

96.72

Show/hide

Query:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

AT4G29390.1 Ribosomal protein S30 family protein

9.8e-28

96.72

Show/hide

Query:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

AT5G56670.1 Ribosomal protein S30 family protein

9.8e-28

96.72

Show/hide

Query:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTCCTGATATATCTGTTTCTTCATCTCTGTAATCTACATTCAGGTAAGGTTCACGGATCTTTGGCTCGTGCTGGTAAGGTGAGAGGCCAAACACCTAAGGTTGCTAA
ACAAGACAAGAAGAAGAAGCCACGAGGACGTGCTCACAAACGGATGCAATACAACCGCAGATTCGTAACTGCCGTTGTTGGTTTTGGCAAGAAGAGAGGACCAAACTCGT
CCGAGAAGTAA

mRNA sequence

Show/hide mRNA sequence

CCGCCCACGTTAACTAACCCACTACTATATATATATGTTGGTCCTAAACCCTAACCCTAATCTTTGCCAATTTGCGTTCTTAGTTTCTAGGGGACGAAGCCGACAAGTCA
GTCCACCGCCATCCAGAAAGGAAGAAGTCGCTTATCAGATTCGCCATGGGTGACTCTCCCACTCTCTCAACTTCATTTACGATTCCTTTCTTTTCATCTGTTTCATGTTC
CTGATATATCTGTTTCTTCATCTCTGTAATCTACATTCAGGTAAGGTTCACGGATCTTTGGCTCGTGCTGGTAAGGTGAGAGGCCAAACACCTAAGGTTGCTAAACAAGA
CAAGAAGAAGAAGCCACGAGGACGTGCTCACAAACGGATGCAATACAACCGCAGATTCGTAACTGCCGTTGTTGGTTTTGGCAAGAAGAGAGGACCAAACTCGTCCGAGA
AGTAAGAGACTCGAGAATTCGGCTGAACAGCCAATTTTTTTTTCATGTTATTTGGAGATATTTTATACTTTCTTTAGTTCTTTTTTGATGTGGTTAAGCTGACAATTTAT
CTTGACGATGATAGTATTATTTCTTTAAGAAGTTATCTGTTTCATCATTTGATAATTGGCTTATGTTTTAGCAATCTGAGTTTTGTTCTGTTGTTTCGGTAGAAATTATT
ACTGGG

Protein sequence

Show/hide protein sequence

MFLIYLFLHLCNLHSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

CSPI02G00590 (gene) of Cucumber (PI 183967) v1 genome