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CSPI02G01210 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G01210
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionArabinogalactan protein 22, putative
Genome locationChr2:797653..798615
RNA-Seq ExpressionCSPI02G01210
SyntenyCSPI02G01210
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR64379.1 hypothetical protein CICLE_v10010340mg [Citrus clementina]1.3e-1155.56Show/hide
Query:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        M+S++L A+P++GF+F+ +LQL +  +   SPA  PS+DG AIDQGIAY+L++LALA+TY+VH
Subjt:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

KAA0061559.1 putative Arabinogalactan protein 22 [Cucumis melo var. makuwa]3.3e-2392.06Show/hide
Query:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        MSSLKLTAVP VGFLFLI+LQLAHGHSHDISPA GPSNDGAAIDQGIAYVLLLLALA+TYI+H
Subjt:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

KDP33656.1 hypothetical protein JCGZ_07227 [Jatropha curcas]1.7e-1164.06Show/hide
Query:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAA-GPSNDGAAIDQGIAYVLLLLALAVTYIVH
        MS + L A+PI+GF+FL +LQL HG +   SPAA GPS+DG  IDQGIAYVL+L+ALAVTY+ H
Subjt:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAA-GPSNDGAAIDQGIAYVLLLLALAVTYIVH

KGN60622.1 hypothetical protein Csa_019490 [Cucumis sativus]1.3e-24100Show/hide
Query:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
Subjt:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

RQP02858.1 hypothetical protein POPTR_018G078801 [Populus trichocarpa]7.6e-1260.32Show/hide
Query:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        MSS++L A+PI+GF+FL +L+   G     SPA GP+NDG  IDQGIAYVLL+LALA+TY+ H
Subjt:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

TrEMBL top hitse value%identityAlignment
A0A067E6Q0 Uncharacterized protein6.3e-1255.56Show/hide
Query:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        M+S++L A+P++GF+F+ +LQL +  +   SPA  PS+DG AIDQGIAY+L++LALA+TY+VH
Subjt:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

A0A0A0LIU0 Uncharacterized protein6.5e-25100Show/hide
Query:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
Subjt:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

A0A3N7G6R6 Uncharacterized protein3.7e-1260.32Show/hide
Query:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        MSS++L A+PI+GF+FL +L+   G     SPA GP+NDG  IDQGIAYVLL+LALA+TY+ H
Subjt:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

A0A5A7V7C0 Putative Arabinogalactan protein 221.6e-2392.06Show/hide
Query:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        MSSLKLTAVP VGFLFLI+LQLAHGHSHDISPA GPSNDGAAIDQGIAYVLLLLALA+TYI+H
Subjt:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

V4WD40 Uncharacterized protein6.3e-1255.56Show/hide
Query:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        M+S++L A+P++GF+F+ +LQL +  +   SPA  PS+DG AIDQGIAY+L++LALA+TY+VH
Subjt:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 162.6e-0743.1Show/hide
Query:  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        +T   +  F+F ++L LA   S  ++PA  P++DG +IDQGIAY+L+++AL +TY++H
Subjt:  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

Q8L9T8 Arabinogalactan protein 414.1e-0852.83Show/hide
Query:  IVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        IV  +F I+L +AH  S   +PA  P++DG  IDQGIAYVL+L+AL +TY++H
Subjt:  IVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

Q9FK16 Arabinogalactan protein 223.7e-0947.62Show/hide
Query:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        M+SLK     +  F+ + V+ L    SH  SPA  P++DG +IDQGIAYVL+++ALA+TY +H
Subjt:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

Q9M373 Arabinogalactan protein 206.5e-0637.93Show/hide
Query:  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        +  + +  F+F ++   A   S  ++PA  P++DG +IDQGIAY+L+++AL +TY++H
Subjt:  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 161.9e-0843.1Show/hide
Query:  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        +T   +  F+F ++L LA   S  ++PA  P++DG +IDQGIAY+L+++AL +TY++H
Subjt:  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

AT3G61640.1 arabinogalactan protein 204.6e-0737.93Show/hide
Query:  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        +  + +  F+F ++   A   S  ++PA  P++DG +IDQGIAY+L+++AL +TY++H
Subjt:  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

AT5G24105.1 arabinogalactan protein 412.9e-0952.83Show/hide
Query:  IVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        IV  +F I+L +AH  S   +PA  P++DG  IDQGIAYVL+L+AL +TY++H
Subjt:  IVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH

AT5G53250.1 arabinogalactan protein 222.6e-1047.62Show/hide
Query:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH
        M+SLK     +  F+ + V+ L    SH  SPA  P++DG +IDQGIAYVL+++ALA+TY +H
Subjt:  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCGTTGAAGCTCACAGCCGTTCCGATCGTCGGATTCTTGTTCTTGATTGTTCTTCAATTGGCTCACGGCCATTCCCACGATATTTCACCTGCGGCGGGTCCTTC
TAACGACGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGCTTGCTCTGGCCGTTACTTACATCGTTCATTGA
mRNA sequenceShow/hide mRNA sequence
CTAAAAGCCATTGAATAGAATATAAAATAAAATTAAGAAACGGAACTTTGAGGCCACGACGTAGCCTTCCAATTGGGCCTCCGTCTGCTTCCACCTCCAGTCGCTTTCGT
ATGCGTGTACGAGTCAACCAGCCGCCAACTCAGTCAAACTCGCGTTTTTTGACTCGTCCAAAACGCACCCCTCAATTTCCCAGAAATTCCAGATTCACCCCATTTCCTTT
CCCCATATAAATACCCTAACCTTCAAATCCCCAATTCCAAAATTCACCTTCTAAATTTTCGTCAATTTTTGCAGTCGATTCACAAAACATGAGTTCGTTGAAGCTCACAG
CCGTTCCGATCGTCGGATTCTTGTTCTTGATTGTTCTTCAATTGGCTCACGGCCATTCCCACGATATTTCACCTGCGGCGGGTCCTTCTAACGACGGAGCTGCAATTGAC
CAAGGGATTGCGTACGTTCTTCTTCTGCTTGCTCTGGCCGTTACTTACATCGTTCATTGACAACGTTTGTACTAATAAAATGATTTTGGGTTCCATATGTAATCTTTTTT
TGTAGTTTTTTCTCCCTTTATTGGTGAAGAAATTGCGTTTGAAATTCATTATTCTTTTTTCTTCTCCTTACGTTTAAATAAAATTCATGATTCATCAATGGTTGTGTTAG
TTGATCTTAA
Protein sequenceShow/hide protein sequence
MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH