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CSPI02G02260 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G02260
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGlyco_18 domain-containing protein
Genome locationChr2:1547792..1548124
RNA-Seq ExpressionCSPI02G02260
SyntenyCSPI02G02260
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0006032 - chitin catabolic process (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0004568 - chitinase activity (molecular function)
GO:0008061 - chitin binding (molecular function)
InterPro domainsIPR001223 - Glycoside hydrolase family 18, catalytic domain
IPR017853 - Glycoside hydrolase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599436.1 Class V chitinase, partial [Cucurbita argyrosperma subsp. sororia]7.5e-2362.86Show/hide
Query:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHG---RFAAMAR
        MA    VN GYWFT TN HFPISKIDTNL+THLFC G  ++N QTYELS S+S KPLI  FS A+KE N +VKTLLSI        GDH     FAAMA 
Subjt:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHG---RFAAMAR

Query:  DSSNR
         SSNR
Subjt:  DSSNR

KAG7030351.1 Chitotriosidase-1, partial [Cucurbita argyrosperma subsp. argyrosperma]7.5e-2362.86Show/hide
Query:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHG---RFAAMAR
        MA    VN GYWFT TN HFPISKIDTNL+THLFC G  ++N QTYELS S+S KPLI  FS A+KE N +VKTLLSI        GDH     FAAMA 
Subjt:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHG---RFAAMAR

Query:  DSSNR
         SSNR
Subjt:  DSSNR

XP_004139401.1 class V chitinase [Cucumis sativus]9.4e-5099.02Show/hide
Query:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSS
        MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSIN QTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSS
Subjt:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSS

Query:  NR
        NR
Subjt:  NR

XP_022999353.1 chitinase-3-like protein 2 [Cucurbita maxima]2.8e-2260.95Show/hide
Query:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHG---RFAAMAR
        MA    VN GYWFT TN HFPISKID+NL+THLFC G  ++N QTYELS S++ KPLI  FS A+KE N +VKTLLSI        GDH     FAAMA 
Subjt:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHG---RFAAMAR

Query:  DSSNR
         SSNR
Subjt:  DSSNR

XP_023545460.1 chitinase-3-like protein 2 [Cucurbita pepo subsp. pepo]4.9e-2262.75Show/hide
Query:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSS
        MA    VN GYWFT TN H PISKIDTNL+THLFC G  ++N QTYELS S+S KPLI  FS  +KE N +VKTLLSI    DDA+ +   FAAMA  SS
Subjt:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSS

Query:  NR
        NR
Subjt:  NR

TrEMBL top hitse value%identityAlignment
A0A0A0LL51 Glyco_18 domain-containing protein4.5e-5099.02Show/hide
Query:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSS
        MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSIN QTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSS
Subjt:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSS

Query:  NR
        NR
Subjt:  NR

A0A6J1CPE3 chitotriosidase-1-like8.4e-2057.84Show/hide
Query:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSS
        MA   FVN GYWFT TN+  P S+ID NL+ HLFC     +N QTYELSIS+S KPLI  FS+ +KE N E+KTLLSI    D+AK +  RF AMA +SS
Subjt:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSS

Query:  NR
        +R
Subjt:  NR

A0A6J1CQ34 chitotriosidase-1-like6.8e-2260.78Show/hide
Query:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSS
        MA   FVN GYWFTHT++  P S+ID NL+THLFCG    +N QTYELSIS+S KPLI  FS+ +KE N E+KTLLSI    DDAK +  RF AMA  SS
Subjt:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSS

Query:  NR
        +R
Subjt:  NR

A0A6J1CQ39 oviduct-specific glycoprotein-like2.0e-2163.27Show/hide
Query:  IFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR
        +FVN GYWFTHTNT FP SKID NLFTHLFC     +N QTYELSIS+S K LI +FSK +K+ N E+KTLLSI    DDAK +  RFAAMA    +R
Subjt:  IFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR

A0A6J1KJH1 chitinase-3-like protein 21.4e-2260.95Show/hide
Query:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHG---RFAAMAR
        MA    VN GYWFT TN HFPISKID+NL+THLFC G  ++N QTYELS S++ KPLI  FS A+KE N +VKTLLSI        GDH     FAAMA 
Subjt:  MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHG---RFAAMAR

Query:  DSSNR
         SSNR
Subjt:  DSSNR

SwissProt top hitse value%identityAlignment
A0A072UR65 Class V chitinase CHIT5b1.2e-0440.28Show/hide
Query:  VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSI
        V G YW    N  FP + +DT+LFTH+F       N+ TY+L IS+S    ++ F+K  K K+    TL SI
Subjt:  VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSI

O81862 Class V chitinase3.4e-1038.24Show/hide
Query:  VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNRTVRR
        V   YWF    + FP++ ID++LFTHLFC     +N QT ++++S++ +P    F++ ++ +N  VKTLLSI         D   +A+MA   SN T R+
Subjt:  VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNRTVRR

Query:  SF
        SF
Subjt:  SF

Arabidopsis top hitse value%identityAlignment
AT4G19750.1 Glycosyl hydrolase family protein with chitinase insertion domain7.7e-1035.42Show/hide
Query:  VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR
        V   YW       FP   ID+  FTHLFC     ++  T+E++IS +    +  F+  +K+KN +V+TLLSI   +     D    A+MA +S NR
Subjt:  VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR

AT4G19760.1 Glycosyl hydrolase family protein with chitinase insertion domain1.9e-0835.58Show/hide
Query:  VNGGYWFTHTNTH--------FPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARD
        V   YWF    +          P S ID+ LFTHLFC     ++  T+E++IS +       F++ +KEKN +V+TLLSI   +     D    A+MA +
Subjt:  VNGGYWFTHTNTH--------FPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARD

Query:  SSNR
        S NR
Subjt:  SSNR

AT4G19800.1 Glycosyl hydrolase family protein with chitinase insertion domain2.9e-0934.55Show/hide
Query:  VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR----
        V   YWF  T+  FP + ID++LFTHLFC     +  ++YE++I+   +     F++ ++++N  VKTLLSI         D   FA+MA +  +R    
Subjt:  VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNR----

Query:  ----TVRRSF
            TV RS+
Subjt:  ----TVRRSF

AT4G19810.1 Glycosyl hydrolase family protein with chitinase insertion domain2.4e-1138.24Show/hide
Query:  VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNRTVRR
        V   YWF    + FP++ ID++LFTHLFC     +N QT ++++S++ +P    F++ ++ +N  VKTLLSI         D   +A+MA   SN T R+
Subjt:  VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNRTVRR

Query:  SF
        SF
Subjt:  SF

AT4G19820.1 Glycosyl hydrolase family protein with chitinase insertion domain4.1e-1138.24Show/hide
Query:  VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNRTVRR
        V   YWF  + +  P+++ID++LFTHLFC     IN  TY++ +S+  KP    F++ ++ +N  VKTLLSI        GD     A A  +SN T R+
Subjt:  VNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNRTVRR

Query:  SF
         F
Subjt:  SF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTCAAAATTTTTGTGAATGGAGGCTATTGGTTCACCCACACCAATACCCACTTTCCCATTTCAAAAATTGATACCAATCTTTTCACTCATCTCTTCTGTGGTGG
TTGTGTTAGTATCAACCTCCAAACTTATGAACTCTCCATTTCAAATTCCACAAAACCCCTAATTGACCAATTTTCCAAAGCCATCAAAGAGAAAAATCACGAGGTAAAAA
CTTTGTTGTCCATCAACGAATCAGAAGATGATGCAAAAGGTGATCATGGAAGATTTGCAGCCATGGCTAGGGACTCTTCGAACCGAACCGTGCGACGTTCATTTGATCTT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTCAAAATTTTTGTGAATGGAGGCTATTGGTTCACCCACACCAATACCCACTTTCCCATTTCAAAAATTGATACCAATCTTTTCACTCATCTCTTCTGTGGTGG
TTGTGTTAGTATCAACCTCCAAACTTATGAACTCTCCATTTCAAATTCCACAAAACCCCTAATTGACCAATTTTCCAAAGCCATCAAAGAGAAAAATCACGAGGTAAAAA
CTTTGTTGTCCATCAACGAATCAGAAGATGATGCAAAAGGTGATCATGGAAGATTTGCAGCCATGGCTAGGGACTCTTCGAACCGAACCGTGCGACGTTCATTTGATCTT
TAA
Protein sequenceShow/hide protein sequence
MAFKIFVNGGYWFTHTNTHFPISKIDTNLFTHLFCGGCVSINLQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGDHGRFAAMARDSSNRTVRRSFDL