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CSPI02G02700 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G02700
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionVQ domain-containing protein
Genome locationChr2:1874056..1874722
RNA-Seq ExpressionCSPI02G02700
SyntenyCSPI02G02700
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]5.3e-5887.07Show/hide
Query:  MEN-FTTLPSNFHHKKVSQVSNK-ATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD---DQSVQDFNHVFYPPPPSSS-PGVSFDPK
        MEN  TTLP++FHH+KVSQ SNK  TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD   DQSVQDFNH FYPPPPSSS PGVSFDP+
Subjt:  MEN-FTTLPSNFHHKKVSQVSNK-ATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD---DQSVQDFNHVFYPPPPSSS-PGVSFDPK

Query:  DSYGNSASGDVLF-DRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
        D YG SASGDVLF DRIEDGDEGRYWRGEME GSFSGFQASSCVNIW
Subjt:  DSYGNSASGDVLF-DRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]3.1e-7499.29Show/hide
Query:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDSYGNS
        MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKD YGNS
Subjt:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDSYGNS

Query:  ASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
        ASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
Subjt:  ASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.8e-2053.19Show/hide
Query:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDSYGN
        MEN  +LP++  H+K+   + +AT+   NKPIKVKYISSPMMVKA+NE EFRAIVQKLTGQHS D   D+S Q+FNH F PP   SS   SFD KD Y +
Subjt:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDSYGN

Query:  SASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
          S D  +D I          GEM+  S  GFQA S V++W
Subjt:  SASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]4.4e-2051.77Show/hide
Query:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDSYGN
        MEN  +LP++  H+K+   + +AT+   NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS D   D+S Q+FNH F PP   SS   SFD KD Y  
Subjt:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDSYGN

Query:  SASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
                D +          GEM+  S  GFQA S V++W
Subjt:  SASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]2.7e-3376.32Show/hide
Query:  QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP-DHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDSYGNSASGDVLFDRIEDGDEGRYWRGEMELG
        QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP D  DQS +DFN VFY PPPSS    SFDPKD Y  SASGDVLFD          W+GEME G
Subjt:  QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP-DHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDSYGNSASGDVLFDRIEDGDEGRYWRGEMELG

Query:  SFSGFQASSCVNIW
        SFSGFQASSCVN W
Subjt:  SFSGFQASSCVNIW

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein1.5e-7499.29Show/hide
Query:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDSYGNS
        MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKD YGNS
Subjt:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDSYGNS

Query:  ASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
        ASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
Subjt:  ASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW

A0A5A7VDH6 VQ motif-containing protein2.6e-5887.07Show/hide
Query:  MEN-FTTLPSNFHHKKVSQVSNK-ATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD---DQSVQDFNHVFYPPPPSSS-PGVSFDPK
        MEN  TTLP++FHH+KVSQ SNK  TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD   DQSVQDFNH FYPPPPSSS PGVSFDP+
Subjt:  MEN-FTTLPSNFHHKKVSQVSNK-ATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD---DQSVQDFNHVFYPPPPSSS-PGVSFDPK

Query:  DSYGNSASGDVLF-DRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
        D YG SASGDVLF DRIEDGDEGRYWRGEME GSFSGFQASSCVNIW
Subjt:  DSYGNSASGDVLF-DRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like2.0e-1853.45Show/hide
Query:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQS-----VQDFNHVFYPPPPSSSPGVSFDPKDSYGNSASGDVLFDRIEDGDEGRYWRGEME
        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   +S      ++ NH FYPPPPS++  VS DPK  YG      ++  ++ +  EG + + EM+
Subjt:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQS-----VQDFNHVFYPPPPSSSPGVSFDPKDSYGNSASGDVLFDRIEDGDEGRYWRGEME

Query:  LGSFSGFQASSCVNIW
           FSGFQA SCVN +
Subjt:  LGSFSGFQASSCVNIW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like2.1e-2051.77Show/hide
Query:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDSYGN
        MEN  +LP++  H+K+   + +AT+   NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS D   D+S Q+FNH F PP   SS   SFD KD Y  
Subjt:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDSYGN

Query:  SASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
                D +          GEM+  S  GFQA S V++W
Subjt:  SASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW

W9RT96 VQ domain-containing protein2.7e-0738.46Show/hide
Query:  SNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS-------PDHDDQSVQDFNHVF----YPPPPSSSPGVSFDPKDSYGNSASGDVLFD
        S K     + KPIK+KYISSPMMV+ANN SEFRAIVQ+LTG++S         H D+S+     +F    +  P  S     + P+ S  ++   D   D
Subjt:  SNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS-------PDHDDQSVQDFNHVF----YPPPPSSSPGVSFDPKDSYGNSASGDVLFD

Query:  RIEDG-------------DE-GRYWRGEMELGSFSGFQASSCV
            G             DE G +WR E+   SF+GFQ SSC+
Subjt:  RIEDG-------------DE-GRYWRGEMELGSFSGFQASSCV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein3.6e-0434.71Show/hide
Query:  KATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFD-PKDSYGN--SASGDVLFDRIEDGDEGRY
        K+T  H  KPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D              PP P++   V    P +S  N     G+V  +     DE  +
Subjt:  KATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFD-PKDSYGN--SASGDVLFDRIEDGDEGRY

Query:  WRGEMELGSFSGFQASSCVNI
           +M  G  SGF +S   N+
Subjt:  WRGEMELGSFSGFQASSCVNI

AT3G56710.1 sigma factor binding protein 12.1e-0433.33Show/hide
Query:  KKVSQVSNKATIDHQ-----NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQ---SVQDFNHVFYPPPPSSSPGV----SFDPKDS--YGN
        KK S VS K+    +     NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D   +   S    +H   PP  + +P V     F  +DS  Y  
Subjt:  KKVSQVSNKATIDHQ-----NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQ---SVQDFNHVFYPPPPSSSPGV----SFDPKDS--YGN

Query:  SASGDV-LFDRIEDGDEGRYWRGEMELGSFSGFQA
          + D+ L D++  G  G +  G   +  F    +
Subjt:  SASGDV-LFDRIEDGDEGRYWRGEMELGSFSGFQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATTTCACAACCCTTCCTTCTAATTTTCATCATAAAAAAGTTAGCCAAGTTTCCAACAAAGCAACAATTGATCATCAAAACAAGCCCATCAAAGTGAAGTACAT
TTCTAGTCCCATGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCAGCACTCTCCTGATCATGATGATCAATCAGTTCAAGATT
TTAACCATGTTTTTTATCCACCCCCACCCTCCTCCTCCCCCGGGGTTTCTTTCGATCCTAAGGATTCTTATGGTAATTCGGCCTCCGGTGATGTACTCTTCGACCGGATT
GAGGACGGTGATGAAGGGCGGTACTGGCGAGGTGAAATGGAATTAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATATGGTGA
mRNA sequenceShow/hide mRNA sequence
CACGTTACAAAATCCTACAAAACCCCCTCAAATTGTCTCATCACAAACAACAAATCAAATTTCCCTTTTAATTCCTCCTCTCCCAATTCTTCCTCTTTTTTATTTCTTTA
TGGAGAATTTCACAACCCTTCCTTCTAATTTTCATCATAAAAAAGTTAGCCAAGTTTCCAACAAAGCAACAATTGATCATCAAAACAAGCCCATCAAAGTGAAGTACATT
TCTAGTCCCATGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCAGCACTCTCCTGATCATGATGATCAATCAGTTCAAGATTT
TAACCATGTTTTTTATCCACCCCCACCCTCCTCCTCCCCCGGGGTTTCTTTCGATCCTAAGGATTCTTATGGTAATTCGGCCTCCGGTGATGTACTCTTCGACCGGATTG
AGGACGGTGATGAAGGGCGGTACTGGCGAGGTGAAATGGAATTAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATATGGTGATGGAGATGGAGAGGAAAA
GTTTGTGGATGATGAGTTACATCATGACTTTTTTAGCTATAAAATATAATTTTTGTGAGACTTTGTATTTAGTATATGTGAAAGGTTATATATGAATATATAGATTTGAA
TTTTCTT
Protein sequenceShow/hide protein sequence
MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDSYGNSASGDVLFDRI
EDGDEGRYWRGEMELGSFSGFQASSCVNIW