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CSPI02G02880 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G02880
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPSII 6.1 kDa protein
Genome locationChr2:1985105..1986620
RNA-Seq ExpressionCSPI02G02880
SyntenyCSPI02G02880
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139238.1 photosystem II reaction center W protein, chloroplastic [Cucumis sativus]1.4e-63100Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

XP_008456049.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo]2.6e-5491.04Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLLPHSRLLLKGSSKLL S TMAA RLPTLQKMK G IKC VEEKPEGKK SEESMVPGTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWILA +F LIWALYFVYASSLDEDEDSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

XP_016902308.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucumis melo]8.7e-5077.56Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHR----------------------LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPA
        MASTLLPHSRLLLKGSSKLL S TMAA                        LPTLQKMK G IKC VEEKPEGKK SEESMVPGTV AVAMAALAAAGPA
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHR----------------------LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPA

Query:  VALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        VALVDER+STEGTGLPFGLSNNLLGWILA +F LIWALYFVYASSLDEDEDSGLSL
Subjt:  VALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

XP_022937622.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata]1.3e-4576.87Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLL HS + LKGS KLL  P MAAHRLP +QKMKKGGIKC +EEK EGK+ S+ES++ GTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWILA +F  IWALYFVYASSL+EDEDSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

XP_038890119.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]3.4e-5490.3Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLL HSRLLLKGSSK+L SP +AAHRLP LQKMKKGGIKC VEEKPEGKK SEES+V GT+ AVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWILA VFALIWALYFVYASSLDEDEDSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0LJA2 PSII 6.1 kDa protein6.7e-64100Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

A0A1S3C2B0 PSII 6.1 kDa protein1.3e-5491.04Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLLPHSRLLLKGSSKLL S TMAA RLPTLQKMK G IKC VEEKPEGKK SEESMVPGTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWILA +F LIWALYFVYASSLDEDEDSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

A0A1S4E257 PSII 6.1 kDa protein4.2e-5077.56Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHR----------------------LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPA
        MASTLLPHSRLLLKGSSKLL S TMAA                        LPTLQKMK G IKC VEEKPEGKK SEESMVPGTV AVAMAALAAAGPA
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHR----------------------LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPA

Query:  VALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        VALVDER+STEGTGLPFGLSNNLLGWILA +F LIWALYFVYASSLDEDEDSGLSL
Subjt:  VALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

A0A6J1FBR0 PSII 6.1 kDa protein6.3e-4676.87Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLL HS + LKGS KLL  P MAAHRLP +QKMKKGGIKC +EEK EGK+ S+ES++ GTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWILA +F  IWALYFVYASSL+EDEDSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

A0A6J1KED2 PSII 6.1 kDa protein1.0e-4377.61Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MAS+LL  SR+LLKGSS +L SP MAAHRLP   KMK+  IKC  EEK EGK+ SEE MV GTV AVAMA +AAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWIL  +F LIW+LYFVYASSLDED+DSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic3.5e-2558.2Show/hide
Query:  LLTSPTMAAHR----LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFAL
        LL  PT+A       LP + K KKGG++CS+E K         S++   V A A AAL A  + PA+ALVDER+STEGTGLPFGLSNNLLGWIL  VF L
Subjt:  LLTSPTMAAHR----LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFAL

Query:  IWALYFVYASSLDEDEDSGLSL
        IW  +FVY SSL+EDE+SGLSL
Subjt:  IWALYFVYASSLDEDEDSGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic2.3e-2451.82Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAA---GPAVALVDERLSTEGTGLPFGL
        +A   L H+  +   SS +L  P+M           K+  + CS+E KP   + +  +    ++GA  +AA AAA    PA+ALVDER+STEGTGLPFGL
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAA---GPAVALVDERLSTEGTGLPFGL

Query:  SNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        SNNLLGWIL  VF LIWALYFVYAS L+EDE+SGLSL
Subjt:  SNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic3.2e-1849.02Show/hide
Query:  LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDED
        LP ++  +   ++C+       K+ +  +      GA  +A  A A PA+ALVDER+STEGTGL  GLSNNLLGWIL  VF LIW+LY +Y S L+EDE+
Subjt:  LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDED

Query:  SG
        SG
Subjt:  SG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic5.4e-1040Show/hide
Query:  KCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLD--EDEDSGLSL
        K +       KK++  S +P T+         AA PA ALVDER++ +GTG PFG+++ +LGW+L  VF  +WA++F+    L   ED D GL L
Subjt:  KCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLD--EDEDSGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W2.5e-2658.2Show/hide
Query:  LLTSPTMAAHR----LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFAL
        LL  PT+A       LP + K KKGG++CS+E K         S++   V A A AAL A  + PA+ALVDER+STEGTGLPFGLSNNLLGWIL  VF L
Subjt:  LLTSPTMAAHR----LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFAL

Query:  IWALYFVYASSLDEDEDSGLSL
        IW  +FVY SSL+EDE+SGLSL
Subjt:  IWALYFVYASSLDEDEDSGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGGATCATCCAAGCTTCTTACATCCCCAACAATGGCAGCTCACAGGTTGCCCACGTTGCAAAAGATGAA
GAAGGGAGGGATAAAATGTAGTGTGGAAGAGAAGCCAGAAGGGAAGAAGCTGTCAGAAGAAAGCATGGTTCCGGGGACAGTGGGCGCAGTGGCGATGGCTGCATTGGCAG
CGGCAGGACCTGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTTTGGCTGTGGTGTTT
GCTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCACTTTGA
mRNA sequenceShow/hide mRNA sequence
CGGGTCATAATACTCAAGTAATTACATACTAAGTATGAAAACTCTTTTTTTTTCTTATATAGTTTTTTTAATCTTCTCATTTCTTGATTTTTCTCCCACCAAGCCATCAA
CAGCACCATTGGTCATAGACTATGACTAAATATTTCACTGATGCAAATGGATGGGAGGTACACGTGGAGAGCAAAGATTGGATGAATAAGGATTGAGTATACAAAACTGT
TTGGCTGTTCTCATATCCAAACTGTGTGGTGCATAAAGATGAAAACTTTTCATTACCCTCAACTTAAAAACACAAAACAACACGAGATCCAAGTTATACAGCCAAACAAA
AGCCTTTCCCTTCATCCTCAAGCAGGTGTTTTTAGCTGCAAACATGGCTTCTACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGGATCATCCAAGCTTCTTACATCCC
CAACAATGGCAGCTCACAGGTTGCCCACGTTGCAAAAGATGAAGAAGGGAGGGATAAAATGTAGTGTGGAAGAGAAGCCAGAAGGGAAGAAGCTGTCAGAAGAAAGCATG
GTTCCGGGGACAGTGGGCGCAGTGGCGATGGCTGCATTGGCAGCGGCAGGACCTGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGG
TTTGAGCAACAACCTTCTTGGGTGGATTTTGGCTGTGGTGTTTGCTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGT
CACTTTGAATCAATCATCCAAATTTCTTAATAAGAAGAATTTATATTTAAATACTTGAGTCTATCTAAGTTGTATTCATCTTTTCACCCTTCACCTAATTGTTATTAAAT
CTCTTTCTTCAGTGATATTTGTTATCTGTTTTCTTTATTTTAAT
Protein sequenceShow/hide protein sequence
MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVF
ALIWALYFVYASSLDEDEDSGLSL