; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI02G05310 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G05310
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUbiquitin-like protein
Genome locationChr2:3776864..3779601
RNA-Seq ExpressionCSPI02G05310
SyntenyCSPI02G05310
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR000626 - Ubiquitin-like domain
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056118.1 Ubiquitin [Cucumis melo var. makuwa]3.0e-4297.85Show/hide
Query:  MYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS
        MYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRK+DNDFEEINIVHP+DFYQS
Subjt:  MYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS

NP_001267513.1 transcription elongation factor B polypeptide 2-like [Cucumis sativus]2.0e-49100Show/hide
Query:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQSPILAV
        MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQSPILAV
Subjt:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQSPILAV

Query:  GKD
        GKD
Subjt:  GKD

XP_008452565.1 PREDICTED: uncharacterized protein LOC103493547 isoform X1 [Cucumis melo]2.7e-4397.89Show/hide
Query:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS
        MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRK+DNDFEEINIVHP+DFYQS
Subjt:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS

XP_016901017.1 PREDICTED: uncharacterized protein LOC103493547 isoform X2 [Cucumis melo]8.8e-4297.89Show/hide
Query:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS
        MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRK DNDFEEINIVHP+DFYQS
Subjt:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS

XP_038889494.1 uncharacterized protein LOC120079401 isoform X2 [Benincasa hispida]1.2e-4194.74Show/hide
Query:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS
        MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLIL+GSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEI+I+ P+DFYQS
Subjt:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS

TrEMBL top hitse value%identityAlignment
A0A1S3BTJ1 uncharacterized protein LOC103493547 isoform X11.3e-4397.89Show/hide
Query:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS
        MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRK+DNDFEEINIVHP+DFYQS
Subjt:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS

A0A1S4DYF9 uncharacterized protein LOC103493547 isoform X24.3e-4297.89Show/hide
Query:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS
        MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRK DNDFEEINIVHP+DFYQS
Subjt:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS

A0A5A7UM04 Ubiquitin1.5e-4297.85Show/hide
Query:  MYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS
        MYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRK+DNDFEEINIVHP+DFYQS
Subjt:  MYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS

A0A6J1HY58 uncharacterized protein LOC1114685511.8e-4092.63Show/hide
Query:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS
        MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQP+VDQRLIL+GSGEVLEDSKTLADQKVENDAVVALTLRKDDN+FEEI+IV  +DFYQS
Subjt:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS

Q8VWY0 Ubiquitin-like protein9.5e-50100Show/hide
Query:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQSPILAV
        MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQSPILAV
Subjt:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQSPILAV

Query:  GKD
        GKD
Subjt:  GKD

SwissProt top hitse value%identityAlignment
P16709 viral Ubiquitin7.6e-0436Show/hide
Query:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLR
        M ++I+    K T   + +P ET  ++KQK+      PV  QRLI   +G+ LEDSKT+AD  ++ ++ + + LR
Subjt:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLR

Arabidopsis top hitse value%identityAlignment
AT5G37640.1 ubiquitin 92.0e-0435.53Show/hide
Query:  MAMYIRIKR-HKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLR
        M+M I  K   + T  I     +T  N+K K++ +   P+  QRLI   SG++L+D +TLAD  ++ D+++ L LR
Subjt:  MAMYIRIKR-HKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLR

AT5G57860.1 Ubiquitin-like superfamily protein4.2e-3475Show/hide
Query:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDF
        MAMYIR+KR KTTYFIQCDP ET L++KQKL +LI+QPV +QRL+LM + EVLEDSK+LADQKVENDAVVALTL+KDDN+FE++NI  P DF
Subjt:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDF

AT5G57860.2 Ubiquitin-like superfamily protein4.2e-3475Show/hide
Query:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDF
        MAMYIR+KR KTTYFIQCDP ET L++KQKL +LI+QPV +QRL+LM + EVLEDSK+LADQKVENDAVVALTL+KDDN+FE++NI  P DF
Subjt:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDF

AT5G57860.3 Ubiquitin-like superfamily protein4.2e-3475Show/hide
Query:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDF
        MAMYIR+KR KTTYFIQCDP ET L++KQKL +LI+QPV +QRL+LM + EVLEDSK+LADQKVENDAVVALTL+KDDN+FE++NI  P DF
Subjt:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDF

AT5G57860.4 Ubiquitin-like superfamily protein7.0e-2172.73Show/hide
Query:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVEN
        MAMYIR+KR KTTYFIQCDP ET L++KQKL +LI+QPV +QRL+LM + EVLEDSK+LADQKV +
Subjt:  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVEN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAATGTATATCCGAATCAAGCGCCATAAGACAACCTACTTTATCCAGTGTGATCCAATTGAGACAACTTTAAATATCAAGCAAAAATTAGAGTCCCTTATTGACCA
ACCAGTAGTTGACCAGCGCTTGATCCTAATGGGGAGTGGGGAAGTATTGGAGGATTCAAAGACACTGGCTGATCAGAAGGTTGAAAATGATGCAGTTGTGGCTCTAACGT
TGCGAAAAGATGATAATGACTTCGAGGAAATCAACATTGTCCATCCAGACGATTTCTACCAATCACCGATTCTGGCGGTTGGTAAGGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAATGTATATCCGAATCAAGCGCCATAAGACAACCTACTTTATCCAGTGTGATCCAATTGAGACAACTTTAAATATCAAGCAAAAATTAGAGTCCCTTATTGACCA
ACCAGTAGTTGACCAGCGCTTGATCCTAATGGGGAGTGGGGAAGTATTGGAGGATTCAAAGACACTGGCTGATCAGAAGGTTGAAAATGATGCAGTTGTGGCTCTAACGT
TGCGAAAAGATGATAATGACTTCGAGGAAATCAACATTGTCCATCCAGACGATTTCTACCAATCACCGATTCTGGCGGTTGGTAAGGACTAA
Protein sequenceShow/hide protein sequence
MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQSPILAVGKD