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CSPI02G05540 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G05540
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr2:4025063..4025440
RNA-Seq ExpressionCSPI02G05540
SyntenyCSPI02G05540
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059755.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.4e-3082.76Show/hide
Query:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFK
        MTQEDKETM+  AYGAIVLNLSDNV+REVI      GMW KLDELYQSKDL+NCAYVRERFFTFKMDDN SL +NLGEFKKLSSDFK
Subjt:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFK

KAA0063883.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.5e-3079.57Show/hide
Query:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKI
        MT E+KETM+N  YGAIVLNLSDNVLREVI      GMW KL+ELYQSKDL N AYVRERFFTFKMD NKSLT+NLGEFKKLSSDF+EL DKI
Subjt:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKI

KAA0065687.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]9.1e-3387.36Show/hide
Query:  MWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKIDDENKSFILLNSLLEAYKEVKMTLKYGRQKI
        MW KLDELYQSKDL N AYVRERFFTFKMDDNKSL +NLGEFKKLSSDFKEL DKI DEN+SFILLNSL EAYKEVKM L+YGRQKI
Subjt:  MWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKIDDENKSFILLNSLLEAYKEVKMTLKYGRQKI

TYJ96960.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.7e-3276.53Show/hide
Query:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKIDDENK
        MTQE+KETM+NVAYGAIVLNLSDNVL+EVI      GMW KL+ELYQSKDL N AY+RERF T+KMDDNKSL +NLGEFKKLS DF+EL+DKI DEN+
Subjt:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKIDDENK

XP_038880370.1 uncharacterized protein LOC120072018 [Benincasa hispida]5.5e-3054.03Show/hide
Query:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKIDDENKSF
        +++ DKET++  AYG I+LN++D++LR+++       +WNKL+E+Y +KDL N A+ RERFFT+K+D  KSLT NL EFK+LSS+F+ +RD I +EN++F
Subjt:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKIDDENKSF

Query:  ILLNSLLEAYKEVKMTLKYGRQKI
        ILLNSL E++K+VK  LKYGR++I
Subjt:  ILLNSLLEAYKEVKMTLKYGRQKI

TrEMBL top hitse value%identityAlignment
A0A5A7V1L8 Retrovirus-related Pol polyprotein from transposon TNT 1-947.0e-3182.76Show/hide
Query:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFK
        MTQEDKETM+  AYGAIVLNLSDNV+REVI      GMW KLDELYQSKDL+NCAYVRERFFTFKMDDN SL +NLGEFKKLSSDFK
Subjt:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFK

A0A5A7V6Z9 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-3079.57Show/hide
Query:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKI
        MT E+KETM+N  YGAIVLNLSDNVLREVI      GMW KL+ELYQSKDL N AYVRERFFTFKMD NKSLT+NLGEFKKLSSDF+EL DKI
Subjt:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKI

A0A5D3BAU2 Retrovirus-related Pol polyprotein from transposon TNT 1-943.7e-3276.53Show/hide
Query:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKIDDENK
        MTQE+KETM+NVAYGAIVLNLSDNVL+EVI      GMW KL+ELYQSKDL N AY+RERF T+KMDDNKSL +NLGEFKKLS DF+EL+DKI DEN+
Subjt:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKIDDENK

A0A5D3CAI4 Retrovirus-related Pol polyprotein from transposon TNT 1-944.4e-3387.36Show/hide
Query:  MWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKIDDENKSFILLNSLLEAYKEVKMTLKYGRQKI
        MW KLDELYQSKDL N AYVRERFFTFKMDDNKSL +NLGEFKKLSSDFKEL DKI DEN+SFILLNSL EAYKEVKM L+YGRQKI
Subjt:  MWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKIDDENKSFILLNSLLEAYKEVKMTLKYGRQKI

A0A5D3DXZ1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-2674.19Show/hide
Query:  MKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKIDDE-NKSF
        M+N  YGAIVLNLSDNVLREVI      GMW KL+ELYQ KDL N A+VRERFFTFKMDDNK + +NL EFKKLSS+FKELRDKI DE N+SF
Subjt:  MKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKIDDE-NKSF

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.2e-1232.26Show/hide
Query:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKIDDENKSF
        M  ED   +   A  AI L+LSD+V+  +I      G+W +L+ LY SK L+N  Y++++ +   M +  +   +L  F  L +    L  KI++E+K+ 
Subjt:  MTQEDKETMKNVAYGAIVLNLSDNVLREVI------GMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKIDDENKSF

Query:  ILLNSLLEAYKEVKMTLKYGRQKI
        +LLNSL  +Y  +  T+ +G+  I
Subjt:  ILLNSLLEAYKEVKMTLKYGRQKI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCAAGAAGACAAAGAAACTATGAAAAATGTAGCCTATGGTGCCATAGTTCTAAACCTAAGTGACAATGTCCTTAGGGAAGTTATTGGTATGTGGAATAAATTGGA
TGAACTCTATCAATCCAAAGACTTAAGTAATTGTGCATACGTGAGGGAGAGGTTCTTTACCTTTAAGATGGATGACAACAAATCACTGACACAGAATCTTGGAGAATTCA
AGAAGTTATCTTCAGATTTTAAAGAATTGAGAGACAAGATTGATGATGAAAATAAATCATTCATTTTACTCAACTCACTTCTAGAAGCATATAAAGAAGTCAAAATGACT
CTCAAATATGGAAGGCAAAAAATCCCACAGATGATGTCATTTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTCAAGAAGACAAAGAAACTATGAAAAATGTAGCCTATGGTGCCATAGTTCTAAACCTAAGTGACAATGTCCTTAGGGAAGTTATTGGTATGTGGAATAAATTGGA
TGAACTCTATCAATCCAAAGACTTAAGTAATTGTGCATACGTGAGGGAGAGGTTCTTTACCTTTAAGATGGATGACAACAAATCACTGACACAGAATCTTGGAGAATTCA
AGAAGTTATCTTCAGATTTTAAAGAATTGAGAGACAAGATTGATGATGAAAATAAATCATTCATTTTACTCAACTCACTTCTAGAAGCATATAAAGAAGTCAAAATGACT
CTCAAATATGGAAGGCAAAAAATCCCACAGATGATGTCATTTAATTAA
Protein sequenceShow/hide protein sequence
MTQEDKETMKNVAYGAIVLNLSDNVLREVIGMWNKLDELYQSKDLSNCAYVRERFFTFKMDDNKSLTQNLGEFKKLSSDFKELRDKIDDENKSFILLNSLLEAYKEVKMT
LKYGRQKIPQMMSFN