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CSPI02G06100 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G06100
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase
Genome locationChr2:4644547..4645033
RNA-Seq ExpressionCSPI02G06100
SyntenyCSPI02G06100
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037607.1 uncharacterized protein E6C27_scaffold277G002620 [Cucumis melo var. makuwa]2.2e-0547.83Show/hide
Query:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQP--------PRQRSLSRTI
        RVEQSI   +  V+LSRG   AS FRG      TPG  +S ++DFK HSGG  SR  S  S  QR SQRI SQP        P Q S++ T+
Subjt:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQP--------PRQRSLSRTI

KAA0037805.1 uncharacterized protein E6C27_scaffold918G00190 [Cucumis melo var. makuwa]4.8e-0547.83Show/hide
Query:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQP--------PRQRSLSRTI
        RVEQSI   + VV+LSRG   AS FRG      TPG  +S ++DFK  SGG  SR  S  S  QR SQRI SQP        P Q S++ T+
Subjt:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQP--------PRQRSLSRTI

KAA0054081.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-0446.74Show/hide
Query:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQP--------PRQRSLSRTI
        RVEQSI   +  V+LSRG   AS FRG      TPG  +S ++DFK  SGG  SR  S  S  QR SQRI SQP        P Q S++ T+
Subjt:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQP--------PRQRSLSRTI

KAA0060864.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa]4.8e-0549.46Show/hide
Query:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQPPRQRSLSRTIMHASLNLQC
        RVEQSI   +L V+LSRG   AS FRG      TPG  +S ++DFK  SGG  SR  S  S  QR SQRI SQP   RS  R+   A +  QC
Subjt:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQPPRQRSLSRTIMHASLNLQC

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]9.7e-0644.55Show/hide
Query:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQPPRQRSLSRTIMHASLNLQCDTQCDLS
        RVEQSI   + V++LSRGV   S  RG      TPG  VSG +DFK  SGG P RQ SS S+ QR SQR SSQ     + SRT   +  +    T  +LS
Subjt:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQPPRQRSLSRTIMHASLNLQCDTQCDLS

Query:  NSDISNAKCE
         + +S+ + E
Subjt:  NSDISNAKCE

TrEMBL top hitse value%identityAlignment
A0A5A7T7T0 Retrotrans_gag domain-containing protein1.0e-0547.83Show/hide
Query:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQP--------PRQRSLSRTI
        RVEQSI   +  V+LSRG   AS FRG      TPG  +S ++DFK HSGG  SR  S  S  QR SQRI SQP        P Q S++ T+
Subjt:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQP--------PRQRSLSRTI

A0A5A7T8K4 Retrotrans_gag domain-containing protein2.3e-0547.83Show/hide
Query:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQP--------PRQRSLSRTI
        RVEQSI   + VV+LSRG   AS FRG      TPG  +S ++DFK  SGG  SR  S  S  QR SQRI SQP        P Q S++ T+
Subjt:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQP--------PRQRSLSRTI

A0A5A7UKK4 Reverse transcriptase6.8e-0546.74Show/hide
Query:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQP--------PRQRSLSRTI
        RVEQSI   +  V+LSRG   AS FRG      TPG  +S ++DFK  SGG  SR  S  S  QR SQRI SQP        P Q S++ T+
Subjt:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQP--------PRQRSLSRTI

A0A5A7V0L5 Retrotransposon protein, putative, Ty3-gypsy sub-class2.3e-0549.46Show/hide
Query:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQPPRQRSLSRTIMHASLNLQC
        RVEQSI   +L V+LSRG   AS FRG      TPG  +S ++DFK  SGG  SR  S  S  QR SQRI SQP   RS  R+   A +  QC
Subjt:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQPPRQRSLSRTIMHASLNLQC

A0A5D3CU23 Retrotrans_gag domain-containing protein4.7e-0644.55Show/hide
Query:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQPPRQRSLSRTIMHASLNLQCDTQCDLS
        RVEQSI   + V++LSRGV   S  RG      TPG  VSG +DFK  SGG P RQ SS S+ QR SQR SSQ     + SRT   +  +    T  +LS
Subjt:  RVEQSIEGPRLVVDLSRGVPLASSFRG------TPG--VSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQPPRQRSLSRTIMHASLNLQCDTQCDLS

Query:  NSDISNAKCE
         + +S+ + E
Subjt:  NSDISNAKCE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCAGACAACTTTGAGAGTAGAGTAGAGCAGAGCATAGAGGGACCAAGGCTAGTGGTGGATCTTAGTAGGGGAGTTCCTTTGGCGAGCAGCTTTAGAGGCACACC
TGGTGTATCAGGTAAACGAGATTTCAAGGGCCATTCTGGTGGCCCACCCTCGAGGCAGTGTAGTTCAAGGAGTTCCTCCCAAAGGCCGAGTCAAAGGATTTCAAGTCAGC
CACCAAGACAACGTAGTCTATCACGCACTATTATGCACGCATCCTTAAACTTACAATGCGACACGCAATGCGACTTGAGCAACTCTGACATCTCTAATGCAAAATGCGAG
AATGCTCTACTTAAGTCCTTGAATTTATCAATTAGACTTAAAACTATTATGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCAGACAACTTTGAGAGTAGAGTAGAGCAGAGCATAGAGGGACCAAGGCTAGTGGTGGATCTTAGTAGGGGAGTTCCTTTGGCGAGCAGCTTTAGAGGCACACC
TGGTGTATCAGGTAAACGAGATTTCAAGGGCCATTCTGGTGGCCCACCCTCGAGGCAGTGTAGTTCAAGGAGTTCCTCCCAAAGGCCGAGTCAAAGGATTTCAAGTCAGC
CACCAAGACAACGTAGTCTATCACGCACTATTATGCACGCATCCTTAAACTTACAATGCGACACGCAATGCGACTTGAGCAACTCTGACATCTCTAATGCAAAATGCGAG
AATGCTCTACTTAAGTCCTTGAATTTATCAATTAGACTTAAAACTATTATGCAATAG
Protein sequenceShow/hide protein sequence
MSADNFESRVEQSIEGPRLVVDLSRGVPLASSFRGTPGVSGKRDFKGHSGGPPSRQCSSRSSSQRPSQRISSQPPRQRSLSRTIMHASLNLQCDTQCDLSNSDISNAKCE
NALLKSLNLSIRLKTIMQ