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CSPI02G06270 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G06270
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibosomal_S5_C domain-containing protein
Genome locationChr2:4831468..4834459
RNA-Seq ExpressionCSPI02G06270
SyntenyCSPI02G06270
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005324 - Ribosomal protein S5, C-terminal
IPR014721 - Ribosomal protein S5 domain 2-type fold, subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059049.1 gag/pol protein [Cucumis melo var. makuwa]6.9e-0480Show/hide
Query:  MAVDAVVLAAVMKRRSGFQSPSYSWPWRRG
        +AVDA+VLA V KRRS FQSPSYSWPWR G
Subjt:  MAVDAVVLAAVMKRRSGFQSPSYSWPWRRG

KAG7027729.1 40S ribosomal protein S2-3, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-0553.33Show/hide
Query:  LAVARATYNPCYSGDLAVRMVPAPRGAGIVAAGVPKKVLQFA--EDASSVVESAFSNLGS
        + +A+ +++PC    L VRMVPAPRGAGIVAA VPKKVLQFA  ED  +    +   LG+
Subjt:  LAVARATYNPCYSGDLAVRMVPAPRGAGIVAAGVPKKVLQFA--EDASSVVESAFSNLGS

TrEMBL top hitse value%identityAlignment
A0A0A0LKB1 Ribosomal_S5_C domain-containing protein7.6e-5793.55Show/hide
Query:  MAVDAVVLAAVMKRRSGFQSPSYSWPWRRGDIEVTRLAVARATYNPCYSGDLAVRMVPAPRGAGIVAAGVPKKVLQFAEDASSVVESAFSNLGSLDILVA
        MAVDAVVLAAVMKRRSGFQSPSYSWPWRRGDIEVTRLAV RATYNPCYSGDLAVRMVPAPRGAGIVAAGVPKKVLQFA DASSVVES F+NLGSLDILVA
Subjt:  MAVDAVVLAAVMKRRSGFQSPSYSWPWRRGDIEVTRLAVARATYNPCYSGDLAVRMVPAPRGAGIVAAGVPKKVLQFAEDASSVVESAFSNLGSLDILVA

Query:  AWELFGINRRFVYEMDFEQLQANI
        AWELFGINRRFVYEMDFEQ+ ++I
Subjt:  AWELFGINRRFVYEMDFEQLQANI

A0A5A7UZU0 Gag/pol protein3.4e-0480Show/hide
Query:  MAVDAVVLAAVMKRRSGFQSPSYSWPWRRG
        +AVDA+VLA V KRRS FQSPSYSWPWR G
Subjt:  MAVDAVVLAAVMKRRSGFQSPSYSWPWRRG

A0A7I8I887 Hypothetical protein5.7e-0449.32Show/hide
Query:  RGDIEVTRLAVARATYN-PC----YSGDLAVRMVPAPRGAGIVAAGVPKKVLQFA--EDASSVVESAFSNLGS
        RG I + +L+V    +  PC      G + VRMVPAPRGAGIVAA VPKKVLQFA  ED  +    +   LG+
Subjt:  RGDIEVTRLAVARATYN-PC----YSGDLAVRMVPAPRGAGIVAAGVPKKVLQFA--EDASSVVESAFSNLGS

A0A7I8IPS6 Hypothetical protein5.7e-0449.32Show/hide
Query:  RGDIEVTRLAVARATYN-PC----YSGDLAVRMVPAPRGAGIVAAGVPKKVLQFA--EDASSVVESAFSNLGS
        RG I + +L+V    +  PC      G + VRMVPAPRGAGIVAA VPKKVLQFA  ED  +    +   LG+
Subjt:  RGDIEVTRLAVARATYN-PC----YSGDLAVRMVPAPRGAGIVAAGVPKKVLQFA--EDASSVVESAFSNLGS

M1D1B2 40S ribosomal protein S24.4e-0451.47Show/hide
Query:  RGDIEVTRLAVARATYNPCYSGDLAVRMVPAPRGAGIVAAGVPKKVLQFA--EDASSVVESAFSNLGS
        RG I + +L+V      P   G + VRMVPAPRGAGIVAA VPKKVLQFA  ED  +    +   LG+
Subjt:  RGDIEVTRLAVARATYNPCYSGDLAVRMVPAPRGAGIVAAGVPKKVLQFA--EDASSVVESAFSNLGS

SwissProt top hitse value%identityAlignment
P27685 40S ribosomal protein S21.1e-0446.88Show/hide
Query:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFAEDASSVVESAFSNLGSLDILVAAWELFGINRRFVY
        G +AVR+VPAPRG GIVAA VPKK+LQ+A     V  S+     ++   V A   F I + F Y
Subjt:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFAEDASSVVESAFSNLGSLDILVAAWELFGINRRFVY

P49688 40S ribosomal protein S2-35.0e-0582.76Show/hide
Query:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA
        G + VRMVPAPRG+GIVAA VPKKVLQFA
Subjt:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA

Q8L8Y0 40S ribosomal protein S2-15.0e-0582.76Show/hide
Query:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA
        G + VRMVPAPRG+GIVAA VPKKVLQFA
Subjt:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA

Q93VB8 40S ribosomal protein S2-25.0e-0582.76Show/hide
Query:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA
        G + VRMVPAPRG+GIVAA VPKKVLQFA
Subjt:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA

Q9SCM3 40S ribosomal protein S2-45.0e-0582.76Show/hide
Query:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA
        G + VRMVPAPRG+GIVAA VPKKVLQFA
Subjt:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA

Arabidopsis top hitse value%identityAlignment
AT1G58380.1 Ribosomal protein S5 family protein3.5e-0682.76Show/hide
Query:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA
        G + VRMVPAPRG+GIVAA VPKKVLQFA
Subjt:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA

AT1G58684.1 Ribosomal protein S5 family protein3.5e-0682.76Show/hide
Query:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA
        G + VRMVPAPRG+GIVAA VPKKVLQFA
Subjt:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA

AT1G58983.1 Ribosomal protein S5 family protein3.5e-0682.76Show/hide
Query:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA
        G + VRMVPAPRG+GIVAA VPKKVLQFA
Subjt:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA

AT1G59359.1 Ribosomal protein S5 family protein3.5e-0682.76Show/hide
Query:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA
        G + VRMVPAPRG+GIVAA VPKKVLQFA
Subjt:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA

AT2G41840.1 Ribosomal protein S5 family protein3.5e-0682.76Show/hide
Query:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA
        G + VRMVPAPRG+GIVAA VPKKVLQFA
Subjt:  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTGGACGCCGTCGTGTTAGCCGCCGTGATGAAGAGGAGAAGTGGGTTCCAGTCACCAAGCTATTCGTGGCCGTGGAGAAGAGGGGATATTGAGGTAACAAGATT
GGCAGTCGCGCGAGCCACGTATAATCCCTGTTATTCCGGTGACCTCGCCGTCCGTATGGTTCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTGGGGTTCCCAAGAAGG
TGCTTCAATTCGCTGAAGATGCAAGTAGTGTAGTGGAGTCTGCTTTCAGTAATCTTGGTAGTCTGGACATTCTTGTAGCAGCTTGGGAACTTTTTGGTATCAACAGAAGA
TTTGTCTACGAAATGGATTTCGAACAGTTACAAGCCAATATAAATTTTGGTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTGGACGCCGTCGTGTTAGCCGCCGTGATGAAGAGGAGAAGTGGGTTCCAGTCACCAAGCTATTCGTGGCCGTGGAGAAGAGGGGATATTGAGGTAACAAGATT
GGCAGTCGCGCGAGCCACGTATAATCCCTGTTATTCCGGTGACCTCGCCGTCCGTATGGTTCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTGGGGTTCCCAAGAAGG
TGCTTCAATTCGCTGAAGATGCAAGTAGTGTAGTGGAGTCTGCTTTCAGTAATCTTGGTAGTCTGGACATTCTTGTAGCAGCTTGGGAACTTTTTGGTATCAACAGAAGA
TTTGTCTACGAAATGGATTTCGAACAGTTACAAGCCAATATAAATTTTGGTTGGTGACCATTGCTAGGGAGGGCTTTATATACCTAAAAGGACAATTACCAAATCATTGA
GGAAGAAAATGACAGATTGCAAGCTGCTCACGGTTTCACTTTGAGATATTTGAAAGAAAAATGTTCATGATCCCAACCAGAGGTGTTGTGGTTTGGTCCTTTTCCCGATC
GTAATGGTAATAAACACGACGTATGGGTATGTTTGCTTGTGAGAAAGAAGGTTGTTTACCATCAACTTCTCCACTA
Protein sequenceShow/hide protein sequence
MAVDAVVLAAVMKRRSGFQSPSYSWPWRRGDIEVTRLAVARATYNPCYSGDLAVRMVPAPRGAGIVAAGVPKKVLQFAEDASSVVESAFSNLGSLDILVAAWELFGINRR
FVYEMDFEQLQANINFGW