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CSPI02G06630 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G06630
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDExH-box ATP-dependent RNA helicase DExH10
Genome locationChr2:5445611..5447595
RNA-Seq ExpressionCSPI02G06630
SyntenyCSPI02G06630
Gene Ontology termsGO:0000460 - maturation of 5.8S rRNA (biological process)
GO:0006401 - RNA catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR012961 - ATP-dependent RNA helicase Ski2, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5725940.1 hypothetical protein HS088_TW23G00673 [Tripterygium wilfordii]8.2e-2093.22Show/hide
Query:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        GASF++VIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKF+AASESLRRG+
Subjt:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

KAG5242910.1 superkiller viralicidic [Salix suchowensis]8.2e-2093.22Show/hide
Query:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        GASFSE+IQMTDIFEGSIIRSARRLDEFLNQLRAAA+AVGEVNLESKF+AASESLRRG+
Subjt:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

XP_004152892.1 DExH-box ATP-dependent RNA helicase DExH10 [Cucumis sativus]7.4e-2198.31Show/hide
Query:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRG+
Subjt:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

XP_008450745.1 PREDICTED: DExH-box ATP-dependent RNA helicase DExH10 [Cucumis melo]1.6e-2096.61Show/hide
Query:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAAS+SLRRG+
Subjt:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

XP_038696167.1 DExH-box ATP-dependent RNA helicase DExH10 isoform X1 [Tripterygium wilfordii]8.2e-2093.22Show/hide
Query:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        GASF++VIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKF+AASESLRRG+
Subjt:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

TrEMBL top hitse value%identityAlignment
A0A0A0LHE5 DSHCT domain-containing protein1.8e-2898.59Show/hide
Query:  MWENRKLILLETGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        MWENRKLILLETGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRG+
Subjt:  MWENRKLILLETGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

A0A1S3BQY6 DExH-box ATP-dependent RNA helicase DExH108.0e-2196.61Show/hide
Query:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAAS+SLRRG+
Subjt:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

A0A6J1K235 DExH-box ATP-dependent RNA helicase DExH105.2e-2093.22Show/hide
Query:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        GASFSEVIQMTD+FEGSIIRSARRLDEFLNQLRAAANAVGEV LESKFSAAS+SLRRG+
Subjt:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

A0A6N2KIM0 Uncharacterized protein4.0e-2093.22Show/hide
Query:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        GASFSE+IQMTDIFEGSIIRSARRLDEFLNQLRAAA+AVGEVNLESKF+AASESLRRG+
Subjt:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

A0A7J7BVL7 DSHCT domain-containing protein4.0e-2093.22Show/hide
Query:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        GASF++VIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKF+AASESLRRG+
Subjt:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

SwissProt top hitse value%identityAlignment
P42285 Exosome RNA helicase MTR41.8e-0948.33Show/hide
Query:  TGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        TGA+F+ + +MTD+FEGSIIR  RRL+E L Q+  AA A+G   LE+KF+     ++R +
Subjt:  TGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

Q23223 mRNA transport homolog 46.7e-0949.15Show/hide
Query:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        GA+FSE+++ TD+FEGSIIR+ RRL+E L ++  AA A+    LE KF  A ++L+R +
Subjt:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

Q9CZU3 Exosome RNA helicase MTR41.8e-0948.33Show/hide
Query:  TGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        TGA+F+ + +MTD+FEGSIIR  RRL+E L Q+  AA A+G   LE+KF+     ++R +
Subjt:  TGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

Q9XIF2 DExH-box ATP-dependent RNA helicase DExH93.7e-0742.37Show/hide
Query:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        G+ F EV+++  +FEGS+IR+ RR++E L QL  AA ++GE  LE+K   A   ++R +
Subjt:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

Q9ZVW2 DExH-box ATP-dependent RNA helicase DExH105.9e-2188.14Show/hide
Query:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        GASF+E+IQMTDIFEGSIIRSARRLDEFLNQLRAAA AVGE +LESKF+AASESLRRG+
Subjt:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

Arabidopsis top hitse value%identityAlignment
AT1G59760.1 RNA helicase, ATP-dependent, SK12/DOB1 protein2.6e-0842.37Show/hide
Query:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        G+ F EV+++  +FEGS+IR+ RR++E L QL  AA ++GE  LE+K   A   ++R +
Subjt:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

AT2G06990.1 RNA helicase, ATP-dependent, SK12/DOB1 protein4.2e-2288.14Show/hide
Query:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        GASF+E+IQMTDIFEGSIIRSARRLDEFLNQLRAAA AVGE +LESKF+AASESLRRG+
Subjt:  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV

AT3G46960.1 RNA helicase, ATP-dependent, SK12/DOB1 protein7.2e-0636Show/hide
Query:  ENRKLILLET------GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV
        EN K  L+E       G  F+E+ ++TD+ EG I+R+  RLDE   + + AA  +G   L  K  AAS +++R +
Subjt:  ENRKLILLET------GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGAAAATCGAAAACTCATTTTGCTTGAAACTGGAGCAAGTTTCTCAGAGGTGATTCAAATGACAGATATTTTCGAGGGTAGCATCATTCGAAGTGCTAGACGGCT
TGATGAATTCTTGAATCAGTTGCGTGCTGCTGCCAATGCTGTGGGGGAGGTAAACTTAGAGAGCAAGTTTTCTGCAGCCAGTGAAAGCCTTCGCAGAGGAGTTGGGGTTC
TTTACATTAAGAAGGTCCTATCAAAGACGGATATTGAGTTGGTGGGGTTCATCGTGAACTCTAGAAGTGAGATATTTTACTCTTTTACTGCAATAGTTCCCAAGGGAGAA
ACAAAAGAACCTACAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGAAAATCGAAAACTCATTTTGCTTGAAACTGGAGCAAGTTTCTCAGAGGTGATTCAAATGACAGATATTTTCGAGGGTAGCATCATTCGAAGTGCTAGACGGCT
TGATGAATTCTTGAATCAGTTGCGTGCTGCTGCCAATGCTGTGGGGGAGGTAAACTTAGAGAGCAAGTTTTCTGCAGCCAGTGAAAGCCTTCGCAGAGGAGTTGGGGTTC
TTTACATTAAGAAGGTCCTATCAAAGACGGATATTGAGTTGGTGGGGTTCATCGTGAACTCTAGAAGTGAGATATTTTACTCTTTTACTGCAATAGTTCCCAAGGGAGAA
ACAAAAGAACCTACAAAATAA
Protein sequenceShow/hide protein sequence
MWENRKLILLETGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGVGVLYIKKVLSKTDIELVGFIVNSRSEIFYSFTAIVPKGE
TKEPTK