CuGenDBv2

Gene ID	CSPI02G08120
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	60S ribosomal protein L38
Genome location	Chr2:7488182..7490225
RNA-Seq Expression	CSPI02G08120
Synteny	CSPI02G08120
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022618 - ribonucleoprotein complex assembly (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002675 - Ribosomal protein L38e IPR038464 - Ribosomal protein L38e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CDP04642.1 unnamed protein product [Coffea canephora]

2.0e-29

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

CDP18171.1 unnamed protein product [Coffea canephora]

2.0e-29

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

QCG74680.1 60S ribosomal protein L38-like protein, partial [Coffea canephora]

2.0e-29

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

XP_002514807.2 60S ribosomal protein L38 [Ricinus communis]

2.0e-29

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

XP_038906668.1 60S ribosomal protein L38-like [Benincasa hispida]

2.0e-29

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CB44 60S ribosomal protein L38

9.6e-30

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A5J5AU72 Uncharacterized protein

9.6e-30

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A6J1CW23 60S ribosomal protein L38

9.6e-30

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A6J1I9U6 60S ribosomal protein L38

9.6e-30

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A6P6UE62 60S ribosomal protein L38

9.6e-30

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

SwissProt top hits

e value

%identity

Alignment

O22860 60S ribosomal protein L38

2.2e-31

95.65

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

P46291 60S ribosomal protein L38

2.7e-29

91.3

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q32PB9 60S ribosomal protein L38

5.8e-24

76.81

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q95V84 60S ribosomal protein L38

3.6e-26

82.61

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPGL+V++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q9JJI8 60S ribosomal protein L38

2.0e-24

78.26

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V+DL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Arabidopsis top hits

e value

%identity

Alignment

AT2G43460.1 Ribosomal L38e protein family

1.6e-32

95.65

Show/hide

Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

AT3G59540.1 Ribosomal L38e protein family

1.6e-32

95.65

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Sequences

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CDS sequence

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ATGCCAAAGCAAATCCATGAGATCAAAGACTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGCTCGGTCAAAATCAAGAGGAGCAAAGATGTAGTCAAGTTTAAGGTTCG
CTGCTCCAAGTACCTTTACACGCTCTGCGTCTTTGACTCGGAGAAGGCTGACAAATTGAAGCAGTCTCTTCCCCCAGGTTTGAGTGTGCAAGATCTTTGA

mRNA sequence

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AAGCATTAACCTTATGGCCCATTAGTTCGATCTGCTGAATCCGAAACCCTAAAAAAAAAAGAAAAAAAGAAAAAAAAAATCGCCATTCGCCCATCGTTCTTCCGAAGCCC
TAAAAAAGACTTCCTCCTTCTTCATTTGTTTCTCTCATATCCTCACGTCCCAACGCCGTTCGTATCACACTTCTTCTCTCACCACCCCTAAAAATGCCAAAGCAAATCCA
TGAGATCAAAGACTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGCTCGGTCAAAATCAAGAGGAGCAAAGATGTAGTCAAGTTTAAGGTTCGCTGCTCCAAGTACCTTT
ACACGCTCTGCGTCTTTGACTCGGAGAAGGCTGACAAATTGAAGCAGTCTCTTCCCCCAGGTTTGAGTGTGCAAGATCTTTGAAGAAGTAGTGAGCTAATTTTGGAGATT
TATATGGAAAAACAAGGGCTGAAGGAAACATTTGCCAGTTATTTTTCTTTCTTATTTTCAATCATCTGCTGTGTTGAATGTTCGGATTTTTATAGGGACGGCTGTTCTTG
TCACGAGTAGGAGTTGGACTGAACTTTTATAGTGTTTCTTAAATTTTATGAACCGTTCTCAGATTTTGAACTGTGAGAGATTTGTCCATCATTTAATCACAACTTCTATC
ATCATTTTGGCCCTTTTGTTCTATATTTTAGTTTTTCTCATCAGAAATCATTTTACTCATCAGAAATTGTCAGCCAGCATATGAATTCTCCATTGGATTTTTCTGGGTAG
GTGGATGATAGAGTTAAAGGAATACTCTTCTTGTTCTAAACTTTCTGGGTCTTAAAAGATTTGGAGAAAACGTTTTTGTTTTCCTAGAACTTCTGATAATTATTCAGC

Protein sequence

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MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

CSPI02G08120 (gene) of Cucumber (PI 183967) v1 genome