; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI02G08430 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G08430
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionzf-RVT domain-containing protein
Genome locationChr2:7930646..7931236
RNA-Seq ExpressionCSPI02G08430
SyntenyCSPI02G08430
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035739.1 hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]4.0e-2738.22Show/hide
Query:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLNASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQE
        SW  AFR +L++EE  EFQ LL  L  + +  + D R WS++    FS KSL+  L  +SP+DK +  A  +S SP+RINIL+WIM+F  +  +  LQ++
Subjt:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLNASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQE

Query:  LQAHALSPICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFNGPSLSNIQR------SQSLLSELCFERNQSL
           +    ICPLC  A+++L H+   CP SS  W + FS F + W F S    +++ + +G +L    R      S++LL E+  ERNQ +
Subjt:  LQAHALSPICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFNGPSLSNIQR------SQSLLSELCFERNQSL

RVX22527.1 hypothetical protein CK203_012735 [Vitis vinifera]9.2e-1633.89Show/hide
Query:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLN-ASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQ
        SW+  FR  L + E +  Q L+S L     SP SDSR WS+  S  FSVKS    L+  S+P+     +  W SK P ++ IL W++ +G +N    L+ 
Subjt:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLN-ASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQ

Query:  ELQAHALSP-ICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFNGPSLSNIQRSQSLLSELC
             AL P  C LC    E + HL   CP +   W K F+   + WV     +D ++  F G  L N  R ++L    C
Subjt:  ELQAHALSP-ICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFNGPSLSNIQRSQSLLSELC

TQD85214.1 hypothetical protein C1H46_029232 [Malus baccata]1.6e-1534.46Show/hide
Query:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTS-DSRVWSMDHSRTFSVKSLTKFLNASSPLDKH-IHQAHWKSKSPKRINILVWIMLFGTLNCATTLQ
        SW+  FR  L   E EE   LL  ++V  +SP+  D+R W+++ S  F+ KS    L+ +  +  +  +   WKSK+P ++ ILVW +  G+LN    +Q
Subjt:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTS-DSRVWSMDHSRTFSVKSLTKFLNASSPLDKH-IHQAHWKSKSPKRINILVWIMLFGTLNCATTLQ

Query:  QELQAHALSP-ICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVF-SSCFKDNILSVFNGPSLSNIQRSQSL
        +      LSP  C LC A  E + H+   C YS   WWK F   ++SWV    CF+  +LS  N  +L   ++S++L
Subjt:  QELQAHALSP-ICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVF-SSCFKDNILSVFNGPSLSNIQRSQSL

TYK21876.1 hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa]3.6e-2838.74Show/hide
Query:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLNASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQE
        SW  AFR +L++EE  EFQ LL  L  + +  + D R WS++    FS KSL+  L  +SP+DK +  A  +S SP+RINIL+WIM+F  +N +  LQ++
Subjt:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLNASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQE

Query:  LQAHALSPICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFNGPSLSNIQR------SQSLLSELCFERNQSL
           +    ICPLC  A+++L H+   CP SS  W + FS F + W F S    +++ + +G +L    R      S++LL E+  ERNQ +
Subjt:  LQAHALSPICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFNGPSLSNIQR------SQSLLSELCFERNQSL

XP_038903695.1 uncharacterized protein LOC120090219 [Benincasa hispida]6.4e-3342.35Show/hide
Query:  HSISSWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLNASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATT
        ++I+SWS  FR +LK+EE   FQ LL  +  ++ S + D RVWS+ ++  ++VKSL   L   SPL+K I    WK+KSP+R+NIL+WIMLFG LN A  
Subjt:  HSISSWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLNASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATT

Query:  LQQELQAHALSP-ICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFNGPSLSNIQR------SQSLLSELCFERNQSL
        LQ++    +LSP +CP C   +E   HL F CPYSS CW K   FF +     + FK N+  +   P+     R       ++LL++L FERNQ +
Subjt:  LQQELQAHALSP-ICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFNGPSLSNIQR------SQSLLSELCFERNQSL

TrEMBL top hitse value%identityAlignment
A0A438KMW4 zf-RVT domain-containing protein4.5e-1633.89Show/hide
Query:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLN-ASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQ
        SW+  FR  L + E +  Q L+S L     SP SDSR WS+  S  FSVKS    L+  S+P+     +  W SK P ++ IL W++ +G +N    L+ 
Subjt:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLN-ASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQ

Query:  ELQAHALSP-ICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFNGPSLSNIQRSQSLLSELC
             AL P  C LC    E + HL   CP +   W K F+   + WV     +D ++  F G  L N  R ++L    C
Subjt:  ELQAHALSP-ICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFNGPSLSNIQRSQSLLSELC

A0A540LFH9 zf-RVT domain-containing protein7.6e-1634.46Show/hide
Query:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTS-DSRVWSMDHSRTFSVKSLTKFLNASSPLDKH-IHQAHWKSKSPKRINILVWIMLFGTLNCATTLQ
        SW+  FR  L   E EE   LL  ++V  +SP+  D+R W+++ S  F+ KS    L+ +  +  +  +   WKSK+P ++ ILVW +  G+LN    +Q
Subjt:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTS-DSRVWSMDHSRTFSVKSLTKFLNASSPLDKH-IHQAHWKSKSPKRINILVWIMLFGTLNCATTLQ

Query:  QELQAHALSP-ICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVF-SSCFKDNILSVFNGPSLSNIQRSQSL
        +      LSP  C LC A  E + H+   C YS   WWK F   ++SWV    CF+  +LS  N  +L   ++S++L
Subjt:  QELQAHALSP-ICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVF-SSCFKDNILSVFNGPSLSNIQRSQSL

A0A5A7T2Y0 zf-RVT domain-containing protein1.9e-2738.22Show/hide
Query:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLNASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQE
        SW  AFR +L++EE  EFQ LL  L  + +  + D R WS++    FS KSL+  L  +SP+DK +  A  +S SP+RINIL+WIM+F  +  +  LQ++
Subjt:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLNASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQE

Query:  LQAHALSPICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFNGPSLSNIQR------SQSLLSELCFERNQSL
           +    ICPLC  A+++L H+   CP SS  W + FS F + W F S    +++ + +G +L    R      S++LL E+  ERNQ +
Subjt:  LQAHALSPICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFNGPSLSNIQR------SQSLLSELCFERNQSL

A0A5D3DE60 zf-RVT domain-containing protein1.7e-2838.74Show/hide
Query:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLNASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQE
        SW  AFR +L++EE  EFQ LL  L  + +  + D R WS++    FS KSL+  L  +SP+DK +  A  +S SP+RINIL+WIM+F  +N +  LQ++
Subjt:  SWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLNASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQE

Query:  LQAHALSPICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFNGPSLSNIQR------SQSLLSELCFERNQSL
           +    ICPLC  A+++L H+   CP SS  W + FS F + W F S    +++ + +G +L    R      S++LL E+  ERNQ +
Subjt:  LQAHALSPICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFNGPSLSNIQR------SQSLLSELCFERNQSL

A0A6J1DIE2 uncharacterized protein LOC1110207651.3e-1541.1Show/hide
Query:  VKSLTKF-LNASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP-ICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWV
        V SL +F  NAS P  K    A WK+KSP+R+N+  WI+  G LN A  +Q++  + AL P  C LC  + ED  HL F C ++S CW   F  F + W 
Subjt:  VKSLTKF-LNASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSP-ICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWV

Query:  FSSCFKDNILSVFNG-PSLSNIQR------SQSLLSELCFERNQSL
        F     DN+  + +G P LS+  R       ++LLSEL FERN  L
Subjt:  FSSCFKDNILSVFNG-PSLSNIQR------SQSLLSELCFERNQSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein1.3e-0428.32Show/hide
Query:  PLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSPICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFN
        P    + QA WK     +I   +W  + G L  AT  +   +     PIC  C    E + H++F CPY+ + W          W   S F+DN+  +  
Subjt:  PLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQELQAHALSPICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFN

Query:  GPSLSNIQRSQSL
           LS  Q + SL
Subjt:  GPSLSNIQRSQSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGACAGAATTCACTCAATATCATCTTGGAGCCCTGCATTCCGTCATGCATTAAAAAATGAGGAATTTGAAGAATTTCAGCTCCTTCTTAGTGGATTACAAGTCAA
AACCATCTCCCCGACCTCAGACTCAAGGGTATGGTCTATGGATCATTCAAGAACTTTTTCAGTGAAATCTCTAACGAAGTTCTTAAATGCCTCTTCACCCCTTGACAAAC
ACATTCACCAAGCACACTGGAAATCAAAGAGTCCAAAGAGAATAAATATTCTGGTGTGGATTATGCTTTTTGGTACTTTAAACTGTGCTACAACTCTTCAACAAGAACTC
CAAGCTCATGCTCTCTCTCCTATTTGTCCACTTTGCCACGCTGCAGCGGAGGATTTACAGCATTTAATTTTTGTTTGCCCCTACTCAAGTGCTTGCTGGTGGAAGTGGTT
TTCATTTTTTCAGATTTCTTGGGTGTTTAGCTCTTGCTTCAAAGATAATATTCTTTCTGTGTTCAACGGCCCTTCCCTCTCAAATATCCAACGCAGTCAAAGCTTGCTGT
CAGAATTATGCTTTGAAAGAAATCAGAGTCTTCCACAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGACAGAATTCACTCAATATCATCTTGGAGCCCTGCATTCCGTCATGCATTAAAAAATGAGGAATTTGAAGAATTTCAGCTCCTTCTTAGTGGATTACAAGTCAA
AACCATCTCCCCGACCTCAGACTCAAGGGTATGGTCTATGGATCATTCAAGAACTTTTTCAGTGAAATCTCTAACGAAGTTCTTAAATGCCTCTTCACCCCTTGACAAAC
ACATTCACCAAGCACACTGGAAATCAAAGAGTCCAAAGAGAATAAATATTCTGGTGTGGATTATGCTTTTTGGTACTTTAAACTGTGCTACAACTCTTCAACAAGAACTC
CAAGCTCATGCTCTCTCTCCTATTTGTCCACTTTGCCACGCTGCAGCGGAGGATTTACAGCATTTAATTTTTGTTTGCCCCTACTCAAGTGCTTGCTGGTGGAAGTGGTT
TTCATTTTTTCAGATTTCTTGGGTGTTTAGCTCTTGCTTCAAAGATAATATTCTTTCTGTGTTCAACGGCCCTTCCCTCTCAAATATCCAACGCAGTCAAAGCTTGCTGT
CAGAATTATGCTTTGAAAGAAATCAGAGTCTTCCACAATAA
Protein sequenceShow/hide protein sequence
MQDRIHSISSWSPAFRHALKNEEFEEFQLLLSGLQVKTISPTSDSRVWSMDHSRTFSVKSLTKFLNASSPLDKHIHQAHWKSKSPKRINILVWIMLFGTLNCATTLQQEL
QAHALSPICPLCHAAAEDLQHLIFVCPYSSACWWKWFSFFQISWVFSSCFKDNILSVFNGPSLSNIQRSQSLLSELCFERNQSLPQ