CuGenDBv2

Gene ID	CSPI02G08510
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	Chr2:8045897..8047372
RNA-Seq Expression	CSPI02G08510
Synteny	CSPI02G08510
Gene Ontology terms	GO:0044237 - cellular metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR025724 - GAG-pre-integrase domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

4.3e-73

34.08

Show/hide

Query:  MAVAMYDIEKFDGKRDFMPLWKVKIKSIVNKQKALKALTDPEKLPKTMTQEDKETMENAADGAIVLNLNDNVLREVIGEETTYGMWTKFDEIYKSKDLSN
        MA   +++ KF+G  DF  LW+ KI++I+ + K  K L D E+LP  +T+ +K  M+  A   I+L L+D VLR V    TT  +W K + +Y +K L N
Subjt:  MAVAMYDIEKFDGKRDFMPLWKVKIKSIVNKQKALKALTDPEKLPKTMTQEDKETMENAADGAIVLNLNDNVLREVIGEETTYGMWTKFDEIYKSKDLSN

Query:  HAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRELELNSQKGD-------
          Y++E+FF +KMD +KSL ENL  F+K+  D   + +K+ DEN++ ILLNSLPE Y+EVK A+KYGR  +T+  V+ A+K R LE+  ++ D       
Subjt:  HAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRELELNSQKGD-------

Query:  --------------------------------------------------QAN----------------------------------------GEGCSFH
                                                          +AN                                          GC+FH
Subjt:  --------------------------------------------------QAN----------------------------------------GEGCSFH

Query:  MTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFL
        MTP + + T ++  + G V +G+   C + G GSV +   D    +  NVR VP LKR LISL  LD  GC  K   G  ++ K S + L     +GL++
Subjt:  MTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFL

Query:  IKEVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP
        ++   ++ +A   S  +     LWHKRL+H+S +GL+ L +Q +L      +L FC+HC++GKSTR  F K  H TK ILDY+HSDLWGP
Subjt:  IKEVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP

KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.9e-76

34.75

Show/hide

Query:  MAVAMYDIEKFDGKRDFMPLWKVKIKSIVNKQKALKALTDPEKLPKTMTQEDKETMENAADGAIVLNLNDNVLREVIGEETTYGMWTKFDEIYKSKDLSN
        M    ++IEKFDG  DF  LW  +I +I+  QKALKAL DP++LP T+T+ ++ET+E  A   +++N+ DNVLR+VI E T +  W K   +Y+ KDL N
Subjt:  MAVAMYDIEKFDGKRDFMPLWKVKIKSIVNKQKALKALTDPEKLPKTMTQEDKETMENAADGAIVLNLNDNVLREVIGEETTYGMWTKFDEIYKSKDLSN

Query:  HAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRELEL-------------
          +++E+ F+FK + NK+L ENL  FKKL++   +  +K+G ENE+ IL+NS+ + YKEVK  LKYGR+ IT++ VI+ +K +ELEL             
Subjt:  HAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRELEL-------------

Query:  ----------------------NSQKGDQANG-----------------------------------------EGCSFHMTPLKGWFTTYKVWNEGLVYM
                              N Q+ D+  G                                          GC++HMT  K WF  YK      VYM
Subjt:  ----------------------NSQKGDQANG-----------------------------------------EGCSFHMTPLKGWFTTYKVWNEGLVYM

Query:  GNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFLIKEVCMNHAALTVSNDMLTEG
        GN   C+I+G+GSV LK       L + V                                 +  +++L   ++ GL+ +K V     AL    +   E 
Subjt:  GNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFLIKEVCMNHAALTVSNDMLTEG

Query:  NLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP
         LWH+RLSHIS KGL  L +Q ++     ++L FC+HC+ GKS R  F K +H++KA LDY+H DLWGP
Subjt:  NLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP

KAA0059756.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.6e-80

80.53

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Query:  MTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFL
        MTPLK WFTTYKVW+EGL+YMGN+ A KIVGIGSVTLKFKD TTTL RNVR+VPSLK  LISL MLDSIGCEYK S   FEI KDSKIVL   +INGLF 
Subjt:  MTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFL

Query:  IKEVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP
        IKEV MNH  L VSND LTEG+LWH RLS ISGKGLK+L EQ I+PKGVAEKLSFC+HCVVGKSTRQSFQKADHNTK ILDYIHS+LWGP
Subjt:  IKEVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP

KAA0065687.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

7.3e-89

74.06

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Query:  MWTKFDEIYKSKDLSNHAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRE
        MW K DE+Y+SKDL N AYVRERFFTFKMDDNKSL ENLG FKKLSSDFKEL DKIGDENESFILLNSLPEAYKEVKMAL+YGRQKIT   VISA++ RE
Subjt:  MWTKFDEIYKSKDLSNHAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRE

Query:  LELNSQKGDQANGEGCSFHMTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFE
        L+LNSQ+ DQ+NGEG                ++++GLVYMGN+NACKIVGIGSVTLKFKD T T  RN+R+VPSLKR LI L MLDSIGCEYK SAG FE
Subjt:  LELNSQKGDQANGEGCSFHMTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFE

Query:  ILKDSKIVLVDLRINGLFLIKEVCMNHAALTVSNDMLTE
        ILKD KIVL   +INGLFLIKE  MNH AL VSND LTE
Subjt:  ILKDSKIVLVDLRINGLFLIKEVCMNHAALTVSNDMLTE

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

3.3e-73

34.08

Show/hide

Query:  MAVAMYDIEKFDGKRDFMPLWKVKIKSIVNKQKALKALTDPEKLPKTMTQEDKETMENAADGAIVLNLNDNVLREVIGEETTYGMWTKFDEIYKSKDLSN
        MA   +++ KF+G  DF  LW+ KI++I+ + K  K L D E+LP  +T+ +K  M+  A   I+L L+D VLR V    TT  +W K + +Y +K L N
Subjt:  MAVAMYDIEKFDGKRDFMPLWKVKIKSIVNKQKALKALTDPEKLPKTMTQEDKETMENAADGAIVLNLNDNVLREVIGEETTYGMWTKFDEIYKSKDLSN

Query:  HAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRELELNSQKGD-------
          Y++E+FF +KMD +KSL ENL  F+K+  D   + +K+ DEN++ ILLNSLPE Y+EVK A+KYGR  +T+  V+ A+K R LE+  ++ D       
Subjt:  HAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRELELNSQKGD-------

Query:  --------------------------------------------------QAN----------------------------------------GEGCSFH
                                                          +AN                                          GC+FH
Subjt:  --------------------------------------------------QAN----------------------------------------GEGCSFH

Query:  MTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFL
        MTP + + T ++  + G V +G+   C + G GSV +   D    +  NVR VP LKR LISL  LD  GC  K   G  ++ K S + L     +GL++
Subjt:  MTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFL

Query:  IKEVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP
        ++   ++ +A   S  +     LWHKRL+H+S +GL+ L +Q +L      +L FC+HC++GKSTR  F K  H TK ILDY+HSDLWGP
Subjt:  IKEVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.1e-77

34.75

Show/hide

Query:  MAVAMYDIEKFDGKRDFMPLWKVKIKSIVNKQKALKALTDPEKLPKTMTQEDKETMENAADGAIVLNLNDNVLREVIGEETTYGMWTKFDEIYKSKDLSN
        M    ++IEKFDG  DF  LW  +I +I+  QKALKAL DP++LP T+T+ ++ET+E  A   +++N+ DNVLR+VI E T +  W K   +Y+ KDL N
Subjt:  MAVAMYDIEKFDGKRDFMPLWKVKIKSIVNKQKALKALTDPEKLPKTMTQEDKETMENAADGAIVLNLNDNVLREVIGEETTYGMWTKFDEIYKSKDLSN

Query:  HAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRELEL-------------
          +++E+ F+FK + NK+L ENL  FKKL++   +  +K+G ENE+ IL+NS+ + YKEVK  LKYGR+ IT++ VI+ +K +ELEL             
Subjt:  HAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRELEL-------------

Query:  ----------------------NSQKGDQANG-----------------------------------------EGCSFHMTPLKGWFTTYKVWNEGLVYM
                              N Q+ D+  G                                          GC++HMT  K WF  YK      VYM
Subjt:  ----------------------NSQKGDQANG-----------------------------------------EGCSFHMTPLKGWFTTYKVWNEGLVYM

Query:  GNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFLIKEVCMNHAALTVSNDMLTEG
        GN   C+I+G+GSV LK       L + V                                 +  +++L   ++ GL+ +K V     AL    +   E 
Subjt:  GNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFLIKEVCMNHAALTVSNDMLTEG

Query:  NLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP
         LWH+RLSHIS KGL  L +Q ++     ++L FC+HC+ GKS R  F K +H++KA LDY+H DLWGP
Subjt:  NLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP

A0A5A7UB25 Putative gag-pol polyprotein

2.1e-73

34.08

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Query:  MAVAMYDIEKFDGKRDFMPLWKVKIKSIVNKQKALKALTDPEKLPKTMTQEDKETMENAADGAIVLNLNDNVLREVIGEETTYGMWTKFDEIYKSKDLSN
        MA   +++ KF+G  DF  LW+ KI++I+ + K  K L D E+LP  +T+ +K  M+  A   I+L L+D VLR V    TT  +W K + +Y +K L N
Subjt:  MAVAMYDIEKFDGKRDFMPLWKVKIKSIVNKQKALKALTDPEKLPKTMTQEDKETMENAADGAIVLNLNDNVLREVIGEETTYGMWTKFDEIYKSKDLSN

Query:  HAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRELELNSQKGD-------
          Y++E+FF +KMD +KSL ENL  F+K+  D   + +K+ DEN++ ILLNSLPE Y+EVK A+KYGR  +T+  V+ A+K R LE+  ++ D       
Subjt:  HAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRELELNSQKGD-------

Query:  --------------------------------------------------QAN----------------------------------------GEGCSFH
                                                          +AN                                          GC+FH
Subjt:  --------------------------------------------------QAN----------------------------------------GEGCSFH

Query:  MTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFL
        MTP + + T ++  + G V +G+   C + G GSV +   D    +  NVR VP LKR LISL  LD  GC  K   G  ++ K S + L     +GL++
Subjt:  MTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFL

Query:  IKEVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP
        ++   ++ +A   S  +     LWHKRL+H+S +GL+ L +Q +L      +L FC+HC++GKSTR  F K  H TK ILDY+HSDLWGP
Subjt:  IKEVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP

A0A5A7UZX2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.9e-81

80.53

Show/hide

Query:  MTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFL
        MTPLK WFTTYKVW+EGL+YMGN+ A KIVGIGSVTLKFKD TTTL RNVR+VPSLK  LISL MLDSIGCEYK S   FEI KDSKIVL   +INGLF 
Subjt:  MTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFL

Query:  IKEVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP
        IKEV MNH  L VSND LTEG+LWH RLS ISGKGLK+L EQ I+PKGVAEKLSFC+HCVVGKSTRQSFQKADHNTK ILDYIHS+LWGP
Subjt:  IKEVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP

A0A5D3CAI4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.6e-89

74.06

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Query:  MWTKFDEIYKSKDLSNHAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRE
        MW K DE+Y+SKDL N AYVRERFFTFKMDDNKSL ENLG FKKLSSDFKEL DKIGDENESFILLNSLPEAYKEVKMAL+YGRQKIT   VISA++ RE
Subjt:  MWTKFDEIYKSKDLSNHAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRE

Query:  LELNSQKGDQANGEGCSFHMTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFE
        L+LNSQ+ DQ+NGEG                ++++GLVYMGN+NACKIVGIGSVTLKFKD T T  RN+R+VPSLKR LI L MLDSIGCEYK SAG FE
Subjt:  LELNSQKGDQANGEGCSFHMTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFE

Query:  ILKDSKIVLVDLRINGLFLIKEVCMNHAALTVSNDMLTE
        ILKD KIVL   +INGLFLIKE  MNH AL VSND LTE
Subjt:  ILKDSKIVLVDLRINGLFLIKEVCMNHAALTVSNDMLTE

A0A5D3DNU1 Putative gag-pol polyprotein

1.6e-73

34.08

Show/hide

Query:  MAVAMYDIEKFDGKRDFMPLWKVKIKSIVNKQKALKALTDPEKLPKTMTQEDKETMENAADGAIVLNLNDNVLREVIGEETTYGMWTKFDEIYKSKDLSN
        MA   +++ KF+G  DF  LW+ KI++I+ + K  K L D E+LP  +T+ +K  M+  A   I+L L+D VLR V    TT  +W K + +Y +K L N
Subjt:  MAVAMYDIEKFDGKRDFMPLWKVKIKSIVNKQKALKALTDPEKLPKTMTQEDKETMENAADGAIVLNLNDNVLREVIGEETTYGMWTKFDEIYKSKDLSN

Query:  HAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRELELNSQKGD-------
          Y++E+FF +KMD +KSL ENL  F+K+  D   + +K+ DEN++ ILLNSLPE Y+EVK A+KYGR  +T+  V+ A+K R LE+  ++ D       
Subjt:  HAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRELELNSQKGD-------

Query:  --------------------------------------------------QAN----------------------------------------GEGCSFH
                                                          +AN                                          GC+FH
Subjt:  --------------------------------------------------QAN----------------------------------------GEGCSFH

Query:  MTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFL
        MTP + + T ++  + G V +G+   C + G GSV +   D    +  NVR VP LKR LISL  LD  GC  K   G  ++ K S + L     +GL++
Subjt:  MTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFL

Query:  IKEVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP
        ++   ++ +A   S  +     LWHKRL+H+S +GL+ L +Q +L      +L FC+HC++GKSTR  F K  H TK ILDY+HSDLWGP
Subjt:  IKEVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.4e-42

25.45

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Query:  MAVAMYDIEKFDGKRDFMPLWKVKIKSIVNKQKALKALTDPEKLPKTMTQEDKETMENAADGAIVLNLNDNVLREVIGEETTYGMWTKFDEIYKSKDLSN
        M+   Y++ KF+G   F   W+ +++ ++ +Q   K L    K P TM  ED   ++  A  AI L+L+D+V+  +I E+T  G+WT+ + +Y SK L+N
Subjt:  MAVAMYDIEKFDGKRDFMPLWKVKIKSIVNKQKALKALTDPEKLPKTMTQEDKETMENAADGAIVLNLNDNVLREVIGEETTYGMWTKFDEIYKSKDLSN

Query:  HAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIREL---------------
          Y++++ +   M +  +   +L  F  L +    L  KI +E+++ +LLNSLP +Y  +   + +G+  I + DV SA+ + E                
Subjt:  HAYVRERFFTFKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIREL---------------

Query:  ------------------------------------------------------ELNSQKGDQANG----------------EGC---------------
                                                              E + QK D                    E C               
Subjt:  ------------------------------------------------------ELNSQKGDQANG----------------EGC---------------

Query:  -SFHMTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRIN
         S H TP++  F  Y   + G V MGN +  KI GIG + +K     T + ++VR+VP L+  LIS   LD  G E   +   + + K S ++   +   
Subjt:  -SFHMTPLKGWFTTYKVWNEGLVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRIN

Query:  GLFLIK-EVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP
         L+    E+C     L  + D ++  +LWHKR+ H+S KGL++L ++ ++       +  C +C+ GK  R SFQ +      ILD ++SD+ GP
Subjt:  GLFLIK-EVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP

P93293 Uncharacterized mitochondrial protein AtMg00300

1.5e-15

35.9

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Query:  SAGAFEILKDSKIVLVDLRINGLFLIK---EVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKA
        S G  ++LK  + +L   R + L++++   E   ++ A T  +    E  LWH RL+H+S +G++LL ++  L       L FC+ C+ GK+ R +F   
Subjt:  SAGAFEILKDSKIVLVDLRINGLFLIK---EVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKA

Query:  DHNTKAILDYIHSDLWG
         H TK  LDY+HSDLWG
Subjt:  DHNTKAILDYIHSDLWG

Arabidopsis top hits

e value

%identity

Alignment

ATMG00300.1 Gag-Pol-related retrotransposon family protein

1.0e-16

35.9

Show/hide

Query:  SAGAFEILKDSKIVLVDLRINGLFLIK---EVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKA
        S G  ++LK  + +L   R + L++++   E   ++ A T  +    E  LWH RL+H+S +G++LL ++  L       L FC+ C+ GK+ R +F   
Subjt:  SAGAFEILKDSKIVLVDLRINGLFLIK---EVCMNHAALTVSNDMLTEGNLWHKRLSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKA

Query:  DHNTKAILDYIHSDLWG
         H TK  LDY+HSDLWG
Subjt:  DHNTKAILDYIHSDLWG

Sequences

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CDS sequence

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ATGGCAGTAGCAATGTATGATATTGAGAAGTTTGATGGTAAGAGAGATTTTATGCCTTTGTGGAAAGTCAAGATCAAATCCATAGTCAACAAACAAAAGGCATTGAAAGC
TCTCACAGATCCAGAAAAGCTACCTAAAACAATGACTCAAGAAGACAAAGAAACTATGGAGAATGCAGCCGATGGTGCCATAGTTTTAAACCTAAATGACAATGTTCTTA
GGGAGGTCATTGGTGAAGAAACAACTTATGGAATGTGGACAAAGTTCGATGAAATCTACAAGTCCAAAGATCTATCTAACCATGCATACGTAAGGGAGAGGTTCTTTACC
TTCAAGATGGATGACAACAAATCTTTGACAGAAAATCTTGGAGCATTCAAGAAGCTGTCTTCAGATTTCAAAGAATTGAGAGACAAGATTGGTGATGAAAATGAATCGTT
TATTCTACTCAACTCACTTCCAGAAGCATACAAAGAAGTAAAGATGGCTCTTAAATATGGAAGACAAAAAATCACCATAGATGATGTTATTTCAGCAGTAAAAATCAGAG
AATTGGAACTTAATTCACAGAAAGGAGATCAAGCTAATGGTGAAGGGTGTTCATTCCATATGACACCATTAAAGGGATGGTTTACAACATACAAAGTGTGGAATGAAGGC
CTAGTATACATGGGAAATGAGAATGCTTGCAAGATAGTAGGCATTGGATCTGTTACACTTAAGTTCAAAGATAAGACAACAACACTTTTTAGGAATGTGAGAAATGTTCC
ATCCTTGAAAAGAAAACTAATTTCCCTTAGCATGCTAGACTCCATAGGTTGTGAATACAAGGACTCTGCGGGAGCGTTTGAAATATTAAAAGACTCAAAGATTGTTCTTG
TCGATTTAAGAATCAATGGACTCTTTCTCATCAAAGAAGTGTGCATGAACCATGCTGCCCTAACTGTTTCTAATGATATGCTAACTGAAGGGAATTTGTGGCATAAAAGA
CTTTCCCATATAAGTGGAAAGGGATTGAAATTATTGTACGAACAGGAAATCCTTCCTAAAGGAGTGGCTGAAAAGTTATCTTTCTGTAAGCATTGTGTAGTTGGCAAGTC
TACAAGACAAAGTTTTCAAAAGGCTGATCACAACACCAAAGCTATCCTAGACTACATTCATTCTGATCTATGGGGACCCTAA

mRNA sequence

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Protein sequence

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MAVAMYDIEKFDGKRDFMPLWKVKIKSIVNKQKALKALTDPEKLPKTMTQEDKETMENAADGAIVLNLNDNVLREVIGEETTYGMWTKFDEIYKSKDLSNHAYVRERFFT
FKMDDNKSLTENLGAFKKLSSDFKELRDKIGDENESFILLNSLPEAYKEVKMALKYGRQKITIDDVISAVKIRELELNSQKGDQANGEGCSFHMTPLKGWFTTYKVWNEG
LVYMGNENACKIVGIGSVTLKFKDKTTTLFRNVRNVPSLKRKLISLSMLDSIGCEYKDSAGAFEILKDSKIVLVDLRINGLFLIKEVCMNHAALTVSNDMLTEGNLWHKR
LSHISGKGLKLLYEQEILPKGVAEKLSFCKHCVVGKSTRQSFQKADHNTKAILDYIHSDLWGP

CSPI02G08510 (gene) of Cucumber (PI 183967) v1 genome