CuGenDBv2

Gene ID	CSPI02G09410
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	nuclear pore complex protein NUP160
Genome location	Chr2:9200953..9203406
RNA-Seq Expression	CSPI02G09410
Synteny	CSPI02G09410
Gene Ontology terms	GO:0006913 - nucleocytoplasmic transport (biological process) GO:0033036 - macromolecule localization (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0071702 - organic substance transport (biological process) GO:0071705 - nitrogen compound transport (biological process) GO:0005643 - nuclear pore (cellular component)
InterPro domains	IPR021717 - Nucleoporin Nup120/160

Homology

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GenBank top hits

e value

%identity

Alignment

TYJ95576.1 nuclear pore complex protein NUP160 isoform X4 [Cucumis melo var. makuwa]

1.5e-67

96.15

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Query:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
        MELPLWLVLMFKDGRRPKTWGMTGEESNPA LFRLYVEYGRYTEATHLLLE MESFASM PADIINRKRPFS+CFPYNAVQYLWCKIDELIRSGHMVDAC
Subjt:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC

Query:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA
        EKLRNLLHGALLNH+KLLKVEGDDILSAVA
Subjt:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA

XP_008457197.1 PREDICTED: nuclear pore complex protein NUP160 isoform X5 [Cucumis melo]

1.5e-67

96.15

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Query:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
        MELPLWLVLMFKDGRRPKTWGMTGEESNPA LFRLYVEYGRYTEATHLLLE MESFASM PADIINRKRPFS+CFPYNAVQYLWCKIDELIRSGHMVDAC
Subjt:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC

Query:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA
        EKLRNLLHGALLNH+KLLKVEGDDILSAVA
Subjt:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA

XP_011649106.1 nuclear pore complex protein NUP160 isoform X1 [Cucumis sativus]

7.4e-70

99.23

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Query:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
        MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPAD+INRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
Subjt:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC

Query:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA
        EKLRNLLHGALLNHLKLLKVEGDDILSAVA
Subjt:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA

XP_011649107.1 nuclear pore complex protein NUP160 isoform X2 [Cucumis sativus]

7.4e-70

99.23

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Query:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
        MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPAD+INRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
Subjt:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC

Query:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA
        EKLRNLLHGALLNHLKLLKVEGDDILSAVA
Subjt:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA

XP_011649109.1 nuclear pore complex protein NUP160 isoform X3 [Cucumis sativus]

7.4e-70

99.23

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Query:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
        MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPAD+INRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
Subjt:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC

Query:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA
        EKLRNLLHGALLNHLKLLKVEGDDILSAVA
Subjt:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKG2 Uncharacterized protein

3.6e-70

99.23

Show/hide

Query:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
        MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPAD+INRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
Subjt:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC

Query:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA
        EKLRNLLHGALLNHLKLLKVEGDDILSAVA
Subjt:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA

A0A1S3C4Y2 nuclear pore complex protein NUP160 isoform X2

7.4e-68

96.15

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Query:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
        MELPLWLVLMFKDGRRPKTWGMTGEESNPA LFRLYVEYGRYTEATHLLLE MESFASM PADIINRKRPFS+CFPYNAVQYLWCKIDELIRSGHMVDAC
Subjt:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC

Query:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA
        EKLRNLLHGALLNH+KLLKVEGDDILSAVA
Subjt:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA

A0A1S3C516 nuclear pore complex protein NUP160 isoform X5

7.4e-68

96.15

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Query:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
        MELPLWLVLMFKDGRRPKTWGMTGEESNPA LFRLYVEYGRYTEATHLLLE MESFASM PADIINRKRPFS+CFPYNAVQYLWCKIDELIRSGHMVDAC
Subjt:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC

Query:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA
        EKLRNLLHGALLNH+KLLKVEGDDILSAVA
Subjt:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA

A0A1S3C685 nuclear pore complex protein NUP160 isoform X4

7.4e-68

96.15

Show/hide

Query:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
        MELPLWLVLMFKDGRRPKTWGMTGEESNPA LFRLYVEYGRYTEATHLLLE MESFASM PADIINRKRPFS+CFPYNAVQYLWCKIDELIRSGHMVDAC
Subjt:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC

Query:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA
        EKLRNLLHGALLNH+KLLKVEGDDILSAVA
Subjt:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA

A0A5D3B9M7 Nuclear pore complex protein NUP160 isoform X4

7.4e-68

96.15

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Query:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
        MELPLWLVLMFKDGRRPKTWGMTGEESNPA LFRLYVEYGRYTEATHLLLE MESFASM PADIINRKRPFS+CFPYNAVQYLWCKIDELIRSGHMVDAC
Subjt:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC

Query:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA
        EKLRNLLHGALLNH+KLLKVEGDDILSAVA
Subjt:  EKLRNLLHGALLNHLKLLKVEGDDILSAVA

SwissProt top hits

e value

%identity

Alignment

Q9C811 Nuclear pore complex protein NUP160

8.3e-40

57.03

Show/hide

Query:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
        +ELPLWL+ MFKDG++ K  GM G+E++PA LF+LYV+YGR TEAT+LLLEYMESFAS  PA+++ RK+   + FPY  V+ LW ++++ + SG MV+ C
Subjt:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC

Query:  EKLRNLLHGALLNHLKLLKVEGDDILSA
         KL+  LH ALLNHLKLLKV+ +D +S+
Subjt:  EKLRNLLHGALLNHLKLLKVEGDDILSA

Arabidopsis top hits

e value

%identity

Alignment

AT1G33410.1 SUPPRESSOR OF AUXIN RESISTANCE1

9.4e-39

53.28

Show/hide

Query:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMA---------PADIINRKRPFSICFPYNAVQYLWCKIDELI
        +ELPLWL+ MFKDG++ K  GM G+E++PA LF+LYV+YGR TEAT+LLLEYMESFAS           PA+++ RK+   + FPY  V+ LW ++++ +
Subjt:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMA---------PADIINRKRPFSICFPYNAVQYLWCKIDELI

Query:  RSGHMVDACEKLRNLLHGALLNHLKLLKVEGDDILSA
         SG MV+ C KL+  LH ALLNHLKLLKV+ +D +S+
Subjt:  RSGHMVDACEKLRNLLHGALLNHLKLLKVEGDDILSA

AT1G33410.2 SUPPRESSOR OF AUXIN RESISTANCE1

5.9e-41

57.03

Show/hide

Query:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC
        +ELPLWL+ MFKDG++ K  GM G+E++PA LF+LYV+YGR TEAT+LLLEYMESFAS  PA+++ RK+   + FPY  V+ LW ++++ + SG MV+ C
Subjt:  MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDAC

Query:  EKLRNLLHGALLNHLKLLKVEGDDILSA
         KL+  LH ALLNHLKLLKV+ +D +S+
Subjt:  EKLRNLLHGALLNHLKLLKVEGDDILSA

Sequences

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CDS sequence

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ATGGAGTTGCCTCTTTGGCTGGTTCTTATGTTTAAGGATGGTAGAAGGCCAAAGACATGGGGGATGACTGGTGAAGAATCAAATCCAGCATTGTTGTTTCGATTATATGT
TGAATATGGTCGATATACAGAGGCTACCCATCTGTTGCTCGAATACATGGAATCCTTTGCATCAATGGCACCAGCAGACATAATTAACCGAAAAAGACCATTCTCTATTT
GCTTCCCCTACAACGCCGTTCAGTACTTATGGTGCAAAATAGATGAATTGATCCGCTCAGGTCACATGGTAGATGCTTGTGAGAAGCTGAGAAACCTATTGCATGGTGCT
TTGTTGAATCATCTGAAGCTGCTTAAAGTCGAGGGAGATGATATCCTATCTGCCGTCGCTTAA

mRNA sequence

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GTTTCTGTAGTTTCACTTACAACTTTCTCTTTCTTGATCATTTAAATTGACAACTTTCAGGAAAAATATAAAGGTCTCAACGCTAGATTGCCTCTTATTGTTGTGGAAAC
ACTTCTCCGAGCAGACTCCCAGATGGAGTTGCCTCTTTGGCTGGTTCTTATGTTTAAGGATGGTAGAAGGCCAAAGACATGGGGGATGACTGGTGAAGAATCAAATCCAG
CATTGTTGTTTCGATTATATGTTGAATATGGTCGATATACAGAGGCTACCCATCTGTTGCTCGAATACATGGAATCCTTTGCATCAATGGCACCAGCAGACATAATTAAC
CGAAAAAGACCATTCTCTATTTGCTTCCCCTACAACGCCGTTCAGTACTTATGGTGCAAAATAGATGAATTGATCCGCTCAGGTCACATGGTAGATGCTTGTGAGAAGCT
GAGAAACCTATTGCATGGTGCTTTGTTGAATCATCTGAAGCTGCTTAAAGTCGAGGGAGATGATATCCTATCTGCCGTCGCTTAAGCTACTCTGGACTACTTCCAGCAGT
TTCTATGATGCCAGGAGGAATCAAGCGGATCACCTAAAGGGAGCTCGTTTGAAGTCAAATTTGGATGCTGATGACAAACCATCTTTCGTTGGAGAATGCTTCAAAGATTG
GTGACCTGAATGGATATTGTTCGGATAACTAAGCATCCAGAGATGGCATGAATATACAGAGGATTGGGGTGGTTTCCCGTTGGGTAATATTTGTAGGCTTGTATATTTCA
TGATTTCATTTGTTTACAACATTTTGATGATGCAATCTTAGACTAGAAATTTCATTAAGCTCCCGCCAGTAAGTAGGGAAAAAGCGTGTATATGTATTATTATAATACTC
GAGTCTGTGTTCCAGCAACATCTTTAAGTGATTATTAGACGGCCATGTTCCCAAGTGCTTCATGCAAGAAAAAGAAATGTAGAATATTCAATTTTGAAAAATTATGACCA
AATGGTTTGATTAAATGACTGATGATGAACGGGTAGAAATCTAGAATATTGAGAAAAAT

Protein sequence

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MELPLWLVLMFKDGRRPKTWGMTGEESNPALLFRLYVEYGRYTEATHLLLEYMESFASMAPADIINRKRPFSICFPYNAVQYLWCKIDELIRSGHMVDACEKLRNLLHGA
LLNHLKLLKVEGDDILSAVA

CSPI02G09410 (gene) of Cucumber (PI 183967) v1 genome