CuGenDBv2

Gene ID	CSPI02G09450
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	Chr2:9267957..9269091
RNA-Seq Expression	CSPI02G09450
Synteny	CSPI02G09450
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026150.1 uncharacterized protein E6C27_scaffold19G001020 [Cucumis melo var. makuwa]

1.9e-23

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Query:  PNFQKQFTSNTPPGMPRFNKQDQFGNNPHQAYMSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGT
        PNFQKQFTSNTPPGMP+FN Q+QF NNP+QAYM+STSQD N   WY    ATNHITNDLANLNY T+Y+ VEQVH+G+GT
Subjt:  PNFQKQFTSNTPPGMPRFNKQDQFGNNPHQAYMSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGT

KAA0062985.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.8e-34

71.55

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Query:  MPRFNKQDQFGNNPHQAYMSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLL
        MPRFN Q+QF NN HQAY    +Q  +SN WY    ATNHITNDL NLNYSTNY+ VEQVHV +GT LKILN GHSF IP DI IS +NHCPILS+PN+L
Subjt:  MPRFNKQDQFGNNPHQAYMSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLL

Query:  HVPHIKKNLLSETEKF
        HVPHIKKNLLS T KF
Subjt:  HVPHIKKNLLSETEKF

KAE8651681.1 hypothetical protein Csa_021152 [Cucumis sativus]

1.2e-22

62.39

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Query:  QKQFTSNTPPGMPRFNKQDQFGNNPHQAYMSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNN
        +KQFT NTP GMP          +P QAYM+S+SQD N N WY    AT HITNDLAN N+ST Y+     HVG+ TSLKILNSGHSFFI  DI IS +N
Subjt:  QKQFTSNTPPGMPRFNKQDQFGNNPHQAYMSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNN

Query:  HCPILSIPN
        HCPILSIPN
Subjt:  HCPILSIPN

KAE8651778.1 hypothetical protein Csa_006130, partial [Cucumis sativus]

1.3e-141

89.42

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Query:  MLIRNNDKAKSKEIKGKVNGTSGKIATEEDKIIMMVEIEEEEENLGTTQTTMLNLWKIWPHNHEMLFFICPNFQKQFTSNTPPGMPRFNKQDQFGNNPHQ
        MLIRNNDKAKSKEIKGKVNGTSGKIATEEDK IMMVEIEEEEENLGTTQTTMLNLWKIWPHNHEMLFFICPNFQKQFTSNTPPGMPRFNKQDQFGNNPHQ
Subjt:  MLIRNNDKAKSKEIKGKVNGTSGKIATEEDKIIMMVEIEEEEENLGTTQTTMLNLWKIWPHNHEMLFFICPNFQKQFTSNTPPGMPRFNKQDQFGNNPHQ

Query:  AYMSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLS-----
        AYMSSTSQDKNSN WY    ATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLS     
Subjt:  AYMSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLS-----

Query:  -------------------ETEKFLLQGQLHEGLYHFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVNE
                           ETEKFLLQGQLHEGLY FSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVNE
Subjt:  -------------------ETEKFLLQGQLHEGLYHFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVNE

RVW60229.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

3.1e-18

35.5

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Query:  MSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSETE----
        M +T +D  +  W+    ATNH+T+DL NLN    YN   ++H+GNGT LKI + G S F  S    SPN    +L + N+L VP IKKNLLS ++    
Subjt:  MSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSETE----

Query:  --------------------KFLLQGQLHEGLYHFSLVK---AHPNSESVTSHQSQLEKPHALVVSTNH--FP--INSSTQT--LWHNRLGHPSTTVVNE
                              LLQG LH+GLY F+L K      +  S+++ +++L   +A +V  ++  FP   NSS     LWH RLGHP++ +V +
Subjt:  --------------------KFLLQGQLHEGLYHFSLVK---AHPNSESVTSHQSQLEKPHALVVSTNH--FP--INSSTQT--LWHNRLGHPSTTVVNE

Query:  SLIYGDHHIPFQEMGFAIISPLLTCSPATLG
          +  D+ IPF     + I     CS   LG
Subjt:  SLIYGDHHIPFQEMGFAIISPLLTCSPATLG

TrEMBL top hits

e value

%identity

Alignment

A0A438EA49 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.5e-18

35.5

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Query:  MSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSETE----
        M +T +D  +  W+    ATNH+T+DL NLN    YN   ++H+GNGT LKI + G S F  S    SPN    +L + N+L VP IKKNLLS ++    
Subjt:  MSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSETE----

Query:  --------------------KFLLQGQLHEGLYHFSLVK---AHPNSESVTSHQSQLEKPHALVVSTNH--FP--INSSTQT--LWHNRLGHPSTTVVNE
                              LLQG LH+GLY F+L K      +  S+++ +++L   +A +V  ++  FP   NSS     LWH RLGHP++ +V +
Subjt:  --------------------KFLLQGQLHEGLYHFSLVK---AHPNSESVTSHQSQLEKPHALVVSTNH--FP--INSSTQT--LWHNRLGHPSTTVVNE

Query:  SLIYGDHHIPFQEMGFAIISPLLTCSPATLG
          +  D+ IPF     + I     CS   LG
Subjt:  SLIYGDHHIPFQEMGFAIISPLLTCSPATLG

A0A438FJP6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.5e-18

35.5

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Query:  MSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSETE----
        M +T +D  +  W+    ATNH+T+DL NLN    YN   ++H+GNGT LKI + G S F  S    SPN    +L + N+L VP IKKNLLS ++    
Subjt:  MSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSETE----

Query:  --------------------KFLLQGQLHEGLYHFSLVK---AHPNSESVTSHQSQLEKPHALVVSTNH--FP--INSSTQT--LWHNRLGHPSTTVVNE
                              LLQG LH+GLY F+L K      +  S+++ +++L   +A +V  ++  FP   NSS     LWH RLGHP++ +V +
Subjt:  --------------------KFLLQGQLHEGLYHFSLVK---AHPNSESVTSHQSQLEKPHALVVSTNH--FP--INSSTQT--LWHNRLGHPSTTVVNE

Query:  SLIYGDHHIPFQEMGFAIISPLLTCSPATLG
          +  D+ IPF     + I     CS   LG
Subjt:  SLIYGDHHIPFQEMGFAIISPLLTCSPATLG

A0A5A7SX68 Calcium-transporting ATPase 9, plasma membrane-type

5.7e-18

46.26

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Query:  KEIKGKVNGT-SGKIATEEDKIIMMVEIEEEEENLGTTQTTMLNLWKIWPHNHEMLFFICPNFQKQFTSNTPPGMP-------RFNKQDQFGNNPHQAYM
        KEI+  ++GT SGKI TEED+I M++ +  EE N GT Q   +          +      PNFQ+QF +   P           FN+Q+  GNN  QAYM
Subjt:  KEIKGKVNGT-SGKIATEEDKIIMMVEIEEEEENLGTTQTTMLNLWKIWPHNHEMLFFICPNFQKQFTSNTPPGMP-------RFNKQDQFGNNPHQAYM

Query:  SSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGT
        +STSQ  N+N WY    A+NH+TNDLANL+  TNYN  EQVHVG+GT
Subjt:  SSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGT

A0A5D3CJL7 Uncharacterized protein

9.1e-24

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Query:  PNFQKQFTSNTPPGMPRFNKQDQFGNNPHQAYMSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGT
        PNFQKQFTSNTPPGMP+FN Q+QF NNP+QAYM+STSQD N   WY    ATNHITNDLANLNY T+Y+ VEQVH+G+GT
Subjt:  PNFQKQFTSNTPPGMPRFNKQDQFGNNPHQAYMSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGT

A0A5D3CWR9 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.8e-35

71.55

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Query:  MPRFNKQDQFGNNPHQAYMSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLL
        MPRFN Q+QF NN HQAY    +Q  +SN WY    ATNHITNDL NLNYSTNY+ VEQVHV +GT LKILN GHSF IP DI IS +NHCPILS+PN+L
Subjt:  MPRFNKQDQFGNNPHQAYMSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLL

Query:  HVPHIKKNLLSETEKF
        HVPHIKKNLLS T KF
Subjt:  HVPHIKKNLLSETEKF

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

4.8e-06

26.37

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Query:  NSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLS---------------
        +SN W     AT+HIT+D  NL+    Y   + V V +G+++ I ++G +         S +     L++ N+L+VP+I KNL+S               
Subjt:  NSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLS---------------

Query:  ---------ETEKFLLQGQLHEGLYHFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVN
                  T   LLQG+  + LY + +  + P                   VS    P + +T + WH RLGHP+ +++N
Subjt:  ---------ETEKFLLQGQLHEGLYHFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVN

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.5e-07

25.42

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Query:  QKQFTSNTPPGMPRFNKQDQFGNNPHQAYMSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSD-------
        Q+Q TS   P  PR N      N+P+           N+N W     AT+HIT+D  NL++   Y   + V + +G+++ I ++G +    S        
Subjt:  QKQFTSNTPPGMPRFNKQDQFGNNPHQAYMSSTSQDKNSNIWY---RATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSD-------

Query:  ILISPNNHCPILSIPNLLHVPHIKKNLLS--------ETEKFLLQGQLHEGLYHFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNR
        +L  PN H  ++S+  L +   +               T   LLQG+  + LY + +     +S++V+   S               P + +T + WH+R
Subjt:  ILISPNNHCPILSIPNLLHVPHIKKNLLS--------ETEKFLLQGQLHEGLYHFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNR

Query:  LGHPSTTVVNESLIYGDHHIPFQEMGFAIISP---LLTCS
        LGHPS  ++N   +  +H +P       +++P   LL+CS
Subjt:  LGHPSTTVVNESLIYGDHHIPFQEMGFAIISP---LLTCS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTGATAAGAAACAATGACAAAGCCAAGAGCAAAGAAATCAAGGGCAAAGTCAATGGAACCAGTGGCAAAATAGCAACAGAAGAGGACAAAATAATAATGATGGTGGA
AATTGAGGAAGAGGAAGAAAATCTTGGAACAACTCAAACCACAATGCTAAATTTGTGGAAAATTTGGCCACACAACCATGAGATGCTATTTTTTATATGCCCGAACTTTC
AAAAACAGTTCACTAGTAATACTCCACCTGGAATGCCAAGGTTCAATAAGCAGGATCAGTTCGGAAATAATCCCCATCAAGCTTATATGAGTTCAACTTCACAAGACAAG
AATAGTAATATATGGTATCGTGCAACTAATCACATCACAAATGATCTTGCTAACCTCAATTACAGCACAAACTACAACGAAGTAGAACAAGTTCATGTTGGTAATGGAAC
AAGTTTAAAAATTCTAAACTCTGGTCATTCTTTCTTTATTCCTTCGGATATTTTAATTTCTCCTAATAATCATTGTCCTATTCTCTCCATACCAAATCTTCTTCATGTTC
CCCACATAAAGAAAAATCTCCTAAGTGAAACTGAAAAATTTTTACTCCAAGGACAACTTCATGAAGGACTATATCATTTCTCACTAGTGAAAGCTCATCCCAATTCAGAG
TCAGTCACCTCTCATCAATCTCAACTTGAGAAACCACATGCTCTAGTAGTCTCCACAAATCATTTTCCTATCAATTCAAGCACTCAAACTCTTTGGCACAATAGATTAGG
CCATCCATCTACTACCGTTGTAAACGAAAGTCTGATTTATGGGGACCATCACATACCATTTCAAGAAATGGGTTTCGCTATTATATCACCTTTGTTGACATGTTCTCCCG
CCACACTTGGATATATTTTCTCCAATCCAAGTCTGAAGCCTTAA

mRNA sequence

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Protein sequence

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MLIRNNDKAKSKEIKGKVNGTSGKIATEEDKIIMMVEIEEEEENLGTTQTTMLNLWKIWPHNHEMLFFICPNFQKQFTSNTPPGMPRFNKQDQFGNNPHQAYMSSTSQDK
NSNIWYRATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSETEKFLLQGQLHEGLYHFSLVKAHPNSE
SVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVNESLIYGDHHIPFQEMGFAIISPLLTCSPATLGYIFSNPSLKP

CSPI02G09450 (gene) of Cucumber (PI 183967) v1 genome