; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI02G09800 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G09800
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr2:9813962..9814433
RNA-Seq ExpressionCSPI02G09800
SyntenyCSPI02G09800
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031937.1 retroelement pol polyprotein-like [Cucumis melo var. makuwa]1.9e-5874.65Show/hide
Query:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA
        WVF+LK KSDV  +IPQFFKLIETQYGK +KQ+ SDN PEL FT FF++KGV+HQ+SCV CPQQNSVVERKHQHILNT R L+FQS +PL FWG+CILTA
Subjt:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA

Query:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST
        ++ INRTPSKLL WKSPFQ LNN +P+Y  LKVFG LCYAS+
Subjt:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST

KAA0068025.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]6.0e-5268.31Show/hide
Query:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA
        WVF+LK KSDV  +IP FFKLIETQYGK +K++ SDN  +L FT FF++KGV+HQ+SCV  PQQNSVVE+KHQHILNT R L+FQS +PL FWG+CI+TA
Subjt:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA

Query:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST
        V+ I+RTPS+LL WK PFQ LNN +P+Y  LKVFG LCYAS+
Subjt:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST

KYP64799.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]5.8e-4762.33Show/hide
Query:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA
        W+F+LK KSD  +VIPQF   IETQ+ KT K   SDN  EL FTD F +KG++HQFSCV  PQQNSVVERKH HILN  R L FQS +PL FWGEC+ TA
Subjt:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA

Query:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYASTSTQS
        VF +NRTPS +L  KSPF++L + +PNY   +VFG LCYAST   S
Subjt:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYASTSTQS

TYK16758.1 Copia protein [Cucumis melo var. makuwa]1.6e-5773.94Show/hide
Query:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA
        WVF+LK KSDV  +IPQFFKLIETQYGK +KQ+ SDN PEL FT FF++KGV+HQ+SCV CPQQNSVVERKHQHILNT R L+FQS +PL FWG+CILTA
Subjt:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA

Query:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST
        ++ INRTPSKLL WKS FQ LNN +P+Y  LKVFG LCYAS+
Subjt:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST

TYK18103.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]6.0e-5268.31Show/hide
Query:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA
        WVF+LK KSDV  +IP FFKLIETQYGK +K++ SDN  +L FT FF++KGV+HQ+SCV  PQQNSVVE+KHQHILNT R L+FQS +PL FWG+CI+TA
Subjt:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA

Query:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST
        V+ I+RTPS+LL WK PFQ LNN +P+Y  LKVFG LCYAS+
Subjt:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST

TrEMBL top hitse value%identityAlignment
A0A151TCM1 Retrovirus-related Pol polyprotein from transposon TNT 1-942.8e-4762.33Show/hide
Query:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA
        W+F+LK KSD  +VIPQF   IETQ+ KT K   SDN  EL FTD F +KG++HQFSCV  PQQNSVVERKH HILN  R L FQS +PL FWGEC+ TA
Subjt:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA

Query:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYASTSTQS
        VF +NRTPS +L  KSPF++L + +PNY   +VFG LCYAST   S
Subjt:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYASTSTQS

A0A5A7SRC2 Retroelement pol polyprotein-like9.3e-5974.65Show/hide
Query:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA
        WVF+LK KSDV  +IPQFFKLIETQYGK +KQ+ SDN PEL FT FF++KGV+HQ+SCV CPQQNSVVERKHQHILNT R L+FQS +PL FWG+CILTA
Subjt:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA

Query:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST
        ++ INRTPSKLL WKSPFQ LNN +P+Y  LKVFG LCYAS+
Subjt:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST

A0A5A7VQN7 Cysteine-rich RLK (Receptor-like protein kinase) 82.9e-5268.31Show/hide
Query:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA
        WVF+LK KSDV  +IP FFKLIETQYGK +K++ SDN  +L FT FF++KGV+HQ+SCV  PQQNSVVE+KHQHILNT R L+FQS +PL FWG+CI+TA
Subjt:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA

Query:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST
        V+ I+RTPS+LL WK PFQ LNN +P+Y  LKVFG LCYAS+
Subjt:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST

A0A5D3CZP1 Copia protein7.9e-5873.94Show/hide
Query:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA
        WVF+LK KSDV  +IPQFFKLIETQYGK +KQ+ SDN PEL FT FF++KGV+HQ+SCV CPQQNSVVERKHQHILNT R L+FQS +PL FWG+CILTA
Subjt:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA

Query:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST
        ++ INRTPSKLL WKS FQ LNN +P+Y  LKVFG LCYAS+
Subjt:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST

A0A5D3D1N3 Cysteine-rich RLK (Receptor-like protein kinase) 82.9e-5268.31Show/hide
Query:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA
        WVF+LK KSDV  +IP FFKLIETQYGK +K++ SDN  +L FT FF++KGV+HQ+SCV  PQQNSVVE+KHQHILNT R L+FQS +PL FWG+CI+TA
Subjt:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTA

Query:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST
        V+ I+RTPS+LL WK PFQ LNN +P+Y  LKVFG LCYAS+
Subjt:  VFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYAST

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.0e-1432.39Show/hide
Query:  FILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTD---FFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILT
        +++K KSDV  +   F    E  +   V  ++ DN  E +  +   F  +KG+ +  +    PQ N V ER  + I    RT+   + +  +FWGE +LT
Subjt:  FILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTD---FFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILT

Query:  AVFFINRTPSKLL--SWKSPFQLLNNNLPNYQPLKVFGCLCY
        A + INR PS+ L  S K+P+++ +N  P  + L+VFG   Y
Subjt:  AVFFINRTPSKLL--SWKSPFQLLNNNLPNYQPLKVFGCLCY

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.3e-2135.66Show/hide
Query:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELM---FTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECI
        WV+ILK K  V  V  +F  L+E + G+ +K++ SDN  E     F ++    G+ H+ +    PQ N V ER ++ I+   R++   + +P +FWGE +
Subjt:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELM---FTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECI

Query:  LTAVFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYA
         TA + INR+PS  L+++ P ++  N   +Y  LKVFGC  +A
Subjt:  LTAVFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCYA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE18.5e-2540.71Show/hide
Query:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELM-FTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILT
        W++ LKQKS VK     F  L+E ++   +   +SDN  E +   ++F + G+ H  S    P+ N + ERKH+HI+ T  TL   + IP T+W      
Subjt:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELM-FTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILT

Query:  AVFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCY
        AV+ INR P+ LL  +SPFQ L    PNY  L+VFGC CY
Subjt:  AVFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCY

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.2e-2440Show/hide
Query:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPE-LMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILT
        W++ LKQKS VK     F  L+E ++   +  ++SDN  E ++  D+  + G+ H  S    P+ N + ERKH+HI+    TL   + +P T+W      
Subjt:  WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPE-LMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILT

Query:  AVFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCY
        AV+ INR P+ LL  +SPFQ L    PNY+ LKVFGC CY
Subjt:  AVFFINRTPSKLLSWKSPFQLLNNNLPNYQPLKVFGCLCY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGGTCTTCATACTTAAACAAAAGTCTGATGTCAAACTTGTCATACCTCAGTTTTTTAAGCTTATTGAAACCCAATATGGTAAAACAGTCAAGCAAATGCATTCTGATAA
TGACCCTGAACTCATGTTCACTGATTTTTTTAAAGAAAAAGGAGTGTTGCATCAATTCTCTTGTGTTAGTTGTCCTCAACAGAACTCTGTGGTTGAAAGAAAGCATCAAC
ACATACTCAATACAACCCGAACACTATTCTTCCAATCAGGTATCCCTTTAACCTTTTGGGGAGAATGTATACTGACTGCTGTATTTTTTATCAACAGAACTCCTTCGAAG
TTGCTAAGTTGGAAGTCTCCATTCCAATTGCTTAACAACAACTTGCCCAACTATCAACCTCTAAAGGTATTCGGATGTCTATGCTATGCTTCCACTTCCACACAATCGCT
CTAA
mRNA sequenceShow/hide mRNA sequence
CATGGGTCTTCATACTTAAACAAAAGTCTGATGTCAAACTTGTCATACCTCAGTTTTTTAAGCTTATTGAAACCCAATATGGTAAAACAGTCAAGCAAATGCATTCTGAT
AATGACCCTGAACTCATGTTCACTGATTTTTTTAAAGAAAAAGGAGTGTTGCATCAATTCTCTTGTGTTAGTTGTCCTCAACAGAACTCTGTGGTTGAAAGAAAGCATCA
ACACATACTCAATACAACCCGAACACTATTCTTCCAATCAGGTATCCCTTTAACCTTTTGGGGAGAATGTATACTGACTGCTGTATTTTTTATCAACAGAACTCCTTCGA
AGTTGCTAAGTTGGAAGTCTCCATTCCAATTGCTTAACAACAACTTGCCCAACTATCAACCTCTAAAGGTATTCGGATGTCTATGCTATGCTTCCACTTCCACACAATCG
CTCTAAATTTCAACCAAGAGCAATACCGGCTG
Protein sequenceShow/hide protein sequence
WVFILKQKSDVKLVIPQFFKLIETQYGKTVKQMHSDNDPELMFTDFFKEKGVLHQFSCVSCPQQNSVVERKHQHILNTTRTLFFQSGIPLTFWGECILTAVFFINRTPSK
LLSWKSPFQLLNNNLPNYQPLKVFGCLCYASTSTQSL