; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI02G09890 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G09890
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 13
Genome locationChr2:9971006..9972050
RNA-Seq ExpressionCSPI02G09890
SyntenyCSPI02G09890
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK16777.1 DEAD-box ATP-dependent RNA helicase 13 [Cucumis melo var. makuwa]1.8e-6792.36Show/hide
Query:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNAD
        MAAES QS SSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYG+VIPEPDT KHKLIPKASGNSRKEEQNNAD
Subjt:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNAD

Query:  YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDI
        +C DASRGSNDSIDKEA GHNVNTKTSKKGKKEKKKKKKKKVI EVPT E+ VA DI
Subjt:  YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDI

XP_004147170.1 DEAD-box ATP-dependent RNA helicase 13 isoform X1 [Cucumis sativus]5.8e-9899.49Show/hide
Query:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNAD
        MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGN+RKEEQNNAD
Subjt:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNAD

Query:  YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGI
        YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGI
Subjt:  YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGI

XP_031737259.1 DEAD-box ATP-dependent RNA helicase 13 isoform X2 [Cucumis sativus]9.0e-6799.29Show/hide
Query:  GFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNADYCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAID
        GFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGN+RKEEQNNADYCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAID
Subjt:  GFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNADYCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAID

Query:  IGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGI
        IGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGI
Subjt:  IGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGI

XP_038874422.1 DEAD-box ATP-dependent RNA helicase 13 isoform X1 [Benincasa hispida]1.0e-7884.77Show/hide
Query:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNAD
        MA E  QSTSSQKRRLKRKKTQKDPE ERLDSLPWNSSIP DDTLSAFIGSNDLEGGFLSLEEIDEAEYG+ IPEP T K KLI  ASGNSRK EQ N D
Subjt:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNAD

Query:  YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGI
         C DASR ++DSI+KEA GHNVN KTSKKGKKEKKKKKKKKVIHEVPTAE+ V  DIGG+DNDGIETEIGDEMDDDDHLETEKK+QKKEKETK+HGI
Subjt:  YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGI

XP_038874423.1 DEAD-box ATP-dependent RNA helicase 13 isoform X2 [Benincasa hispida]1.0e-7884.77Show/hide
Query:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNAD
        MA E  QSTSSQKRRLKRKKTQKDPE ERLDSLPWNSSIP DDTLSAFIGSNDLEGGFLSLEEIDEAEYG+ IPEP T K KLI  ASGNSRK EQ N D
Subjt:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNAD

Query:  YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGI
         C DASR ++DSI+KEA GHNVN KTSKKGKKEKKKKKKKKVIHEVPTAE+ V  DIGG+DNDGIETEIGDEMDDDDHLETEKK+QKKEKETK+HGI
Subjt:  YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGI

TrEMBL top hitse value%identityAlignment
A0A0A0LNK8 Uncharacterized protein5.6e-9999.49Show/hide
Query:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNAD
        MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGN+RKEEQNNAD
Subjt:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNAD

Query:  YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGIG
        YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGIG
Subjt:  YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGIG

A0A5D3CYA0 DEAD-box ATP-dependent RNA helicase 138.8e-6892.36Show/hide
Query:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNAD
        MAAES QS SSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYG+VIPEPDT KHKLIPKASGNSRKEEQNNAD
Subjt:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNAD

Query:  YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDI
        +C DASRGSNDSIDKEA GHNVNTKTSKKGKKEKKKKKKKKVI EVPT E+ VA DI
Subjt:  YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDI

A0A6J1C9R6 DEAD-box ATP-dependent RNA helicase 13 isoform X11.3e-5570.21Show/hide
Query:  ESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNADYCE
        ES  S   QKRR KRK+TQKDPE ERLDSL WNSSIP DD LSAFIGSN+LEGGFLSLEEIDEAEYG+ IPEP+T K K I KA  N RK+E +NA  C 
Subjt:  ESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNADYCE

Query:  DASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKE
        DAS   +DS  KE      NTKT KKGKKEKK+KKKKKVI+E PT E+ VA DIGG+D+DG ETE+GDEMDD DHLET+KKQQKK+K+
Subjt:  DASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKE

A0A6J1CB51 DEAD-box ATP-dependent RNA helicase 13 isoform X21.3e-5570.21Show/hide
Query:  ESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNADYCE
        ES  S   QKRR KRK+TQKDPE ERLDSL WNSSIP DD LSAFIGSN+LEGGFLSLEEIDEAEYG+ IPEP+T K K I KA  N RK+E +NA  C 
Subjt:  ESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNADYCE

Query:  DASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKE
        DAS   +DS  KE      NTKT KKGKKEKK+KKKKKVI+E PT E+ VA DIGG+D+DG ETE+GDEMDD DHLET+KKQQKK+K+
Subjt:  DASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKE

A0A6J1HMW3 DEAD-box ATP-dependent RNA helicase 133.2e-5466.5Show/hide
Query:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNAD
        MA +  QS SSQKRR KRK+ QKDPE +RLDSL W SSIP DD LSAFIGSNDLEGGFLSLEEIDEAEYG+ IP+P+T K KL   AS  S+K EQ+N D
Subjt:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNAD

Query:  YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKK---KVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGI
         C  AS     S++KE  G N++ +T+KKGKKEKKKKKKK   KV +E PT+E+DVA +IGG+D+DGIETE+GDEMD  D LE EKK QKK+K TKDHGI
Subjt:  YCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKKKKK---KVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGI

SwissProt top hitse value%identityAlignment
Q93Y39 DEAD-box ATP-dependent RNA helicase 131.0e-1234.41Show/hide
Query:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPI------DDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIP--EPDTRKHKLIPKASG--N
        M     +S+  +KR  +  K +++ +FER+DSLPW+SSIPI      +   + F GS  L+GGFLSLEEIDEA+Y + +P  E +  + K  P+     N
Subjt:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPI------DDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIP--EPDTRKHKLIPKASG--N

Query:  SRKEEQNNADYCEDASRGSNDSIDKE----AAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDE
           +E    +  E+   G +D  D++            K +K+ KKEKKKKK+KK I+E    +   A+   G+D   +E ++ +E
Subjt:  SRKEEQNNADYCEDASRGSNDSIDKE----AAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDE

Arabidopsis top hitse value%identityAlignment
AT3G16840.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein7.2e-1434.41Show/hide
Query:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPI------DDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIP--EPDTRKHKLIPKASG--N
        M     +S+  +KR  +  K +++ +FER+DSLPW+SSIPI      +   + F GS  L+GGFLSLEEIDEA+Y + +P  E +  + K  P+     N
Subjt:  MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPI------DDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIP--EPDTRKHKLIPKASG--N

Query:  SRKEEQNNADYCEDASRGSNDSIDKE----AAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDE
           +E    +  E+   G +D  D++            K +K+ KKEKKKKK+KK I+E    +   A+   G+D   +E ++ +E
Subjt:  SRKEEQNNADYCEDASRGSNDSIDKE----AAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCAGAATCAACGCAGTCTACGTCTTCTCAAAAGAGAAGGCTAAAGAGGAAGAAAACCCAGAAAGACCCAGAATTCGAACGTCTCGATTCACTCCCGTGGAACTC
ATCAATCCCTATCGACGACACTTTATCTGCATTTATTGGTTCCAATGATCTCGAAGGAGGATTTCTTTCCCTTGAGGAGATTGACGAAGCTGAGTATGGCATGGTGATTC
CTGAACCTGACACAAGGAAACATAAATTGATACCAAAAGCCAGTGGAAATTCAAGGAAAGAGGAGCAAAACAATGCTGATTACTGTGAGGATGCATCAAGAGGTAGCAAT
GATAGTATTGATAAGGAAGCCGCGGGGCACAATGTTAATACGAAAACTAGCAAAAAAGGGAAAAAGGAGAAGAAGAAAAAGAAGAAAAAAAAGGTCATTCATGAAGTCCC
AACGGCAGAGAAAGATGTGGCTATAGATATTGGTGGCAATGATAATGATGGGATTGAGACAGAGATTGGAGATGAAATGGACGATGATGATCATTTGGAGACGGAGAAGA
AGCAACAAAAGAAAGAAAAAGAAACAAAGGACCATGGAATTGGTTGCATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCAGAATCAACGCAGTCTACGTCTTCTCAAAAGAGAAGGCTAAAGAGGAAGAAAACCCAGAAAGACCCAGAATTCGAACGTCTCGATTCACTCCCGTGGAACTC
ATCAATCCCTATCGACGACACTTTATCTGCATTTATTGGTTCCAATGATCTCGAAGGAGGATTTCTTTCCCTTGAGGAGATTGACGAAGCTGAGTATGGCATGGTGATTC
CTGAACCTGACACAAGGAAACATAAATTGATACCAAAAGCCAGTGGAAATTCAAGGAAAGAGGAGCAAAACAATGCTGATTACTGTGAGGATGCATCAAGAGGTAGCAAT
GATAGTATTGATAAGGAAGCCGCGGGGCACAATGTTAATACGAAAACTAGCAAAAAAGGGAAAAAGGAGAAGAAGAAAAAGAAGAAAAAAAAGGTCATTCATGAAGTCCC
AACGGCAGAGAAAGATGTGGCTATAGATATTGGTGGCAATGATAATGATGGGATTGAGACAGAGATTGGAGATGAAATGGACGATGATGATCATTTGGAGACGGAGAAGA
AGCAACAAAAGAAAGAAAAAGAAACAAAGGACCATGGAATTGGTTGCATTTGA
Protein sequenceShow/hide protein sequence
MAAESTQSTSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNADYCEDASRGSN
DSIDKEAAGHNVNTKTSKKGKKEKKKKKKKKVIHEVPTAEKDVAIDIGGNDNDGIETEIGDEMDDDDHLETEKKQQKKEKETKDHGIGCI