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CSPI02G10530 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G10530
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionHelicase C-terminal domain-containing protein
Genome locationChr2:10651291..10652120
RNA-Seq ExpressionCSPI02G10530
SyntenyCSPI02G10530
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
InterPro domainsIPR040381 - Uncharacterized protein At4g14450-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593848.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]7.7e-3474.8Show/hide
Query:  MADS-HPPNSPAA---TPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKK
        MA+S   P+  AA    PSRLQRRAPASLQI+RSDWKVAIPLLSPLVSP SSP +I +W T DS    S +SSSSHHHH  HHHHHHKES+PEK PVFKK
Subjt:  MADS-HPPNSPAA---TPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKK

Query:  WQHPAAPFHYDSGARAPR-FVPV
        WQHPAAPFHYDSG+RAPR FVPV
Subjt:  WQHPAAPFHYDSGARAPR-FVPV

XP_004142258.1 uncharacterized protein At4g14450, chloroplastic [Cucumis sativus]2.4e-5999.15Show/hide
Query:  MADSHPPNSPAATPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHP
        MADSHPP SPAATPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHP
Subjt:  MADSHPPNSPAATPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHP

Query:  AAPFHYDSGARAPRFVPV
        AAPFHYDSGARAPRFVPV
Subjt:  AAPFHYDSGARAPRFVPV

XP_008460625.2 PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis melo]2.1e-3975.19Show/hide
Query:  MADSHPPNSPAAT-----PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSS------HHHHLLHHHHHHKESDPE
        MADSH   SP  T     PSRLQRRAPASLQINRSDWKVAIPLLSPLVSP SSPKDI +W TPDSR+ SS +SSSS      HHHH  H H HHKE + E
Subjt:  MADSHPPNSPAAT-----PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSS------HHHHLLHHHHHHKESDPE

Query:  KAPVFKKWQHPAAPFHYDSGARAPRFVPV
        KAPVFKKWQHPAAPFHYDSG RAPRFVPV
Subjt:  KAPVFKKWQHPAAPFHYDSGARAPRFVPV

XP_023000559.1 uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima]2.3e-3373.98Show/hide
Query:  MADSHPPNSPAAT----PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKK
        MA+S    S AA     PSRLQRRAPASLQI+RSDWKVAIPLLSPLVSP SSP +I +W T DS    S +SSSSHHH   HHHHHHKES+PEK PVFKK
Subjt:  MADSHPPNSPAAT----PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKK

Query:  WQHPAAPFHYDSGARAPR-FVPV
        WQHPAAPFHYDSG+RAPR FVPV
Subjt:  WQHPAAPFHYDSGARAPR-FVPV

XP_038875425.1 uncharacterized protein At4g14450, chloroplastic-like [Benincasa hispida]1.4e-3573.17Show/hide
Query:  MADSHPPNSPAA-----TPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFK
        MADSH   S A+      PSRLQRRAPASLQINRSDWKVAIPLLSPLVSP SSPKDI +W TPDSR+ SS++S           HHHHKES+PEK PVFK
Subjt:  MADSHPPNSPAA-----TPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFK

Query:  KWQHPAAPFHYDSGARAPRFVPV
        KWQHPAAPFHYDSG RAPRFVPV
Subjt:  KWQHPAAPFHYDSGARAPRFVPV

TrEMBL top hitse value%identityAlignment
A0A0A0LLJ8 Uncharacterized protein1.2e-5999.15Show/hide
Query:  MADSHPPNSPAATPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHP
        MADSHPP SPAATPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHP
Subjt:  MADSHPPNSPAATPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHP

Query:  AAPFHYDSGARAPRFVPV
        AAPFHYDSGARAPRFVPV
Subjt:  AAPFHYDSGARAPRFVPV

A0A1S3CDB1 uncharacterized protein At4g14450, chloroplastic-like1.0e-3975.19Show/hide
Query:  MADSHPPNSPAAT-----PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSS------HHHHLLHHHHHHKESDPE
        MADSH   SP  T     PSRLQRRAPASLQINRSDWKVAIPLLSPLVSP SSPKDI +W TPDSR+ SS +SSSS      HHHH  H H HHKE + E
Subjt:  MADSHPPNSPAAT-----PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSS------HHHHLLHHHHHHKESDPE

Query:  KAPVFKKWQHPAAPFHYDSGARAPRFVPV
        KAPVFKKWQHPAAPFHYDSG RAPRFVPV
Subjt:  KAPVFKKWQHPAAPFHYDSGARAPRFVPV

A0A6J1ER11 uncharacterized protein At4g14450, chloroplastic-like1.0e-3172.36Show/hide
Query:  MADS-HPPNSPAA---TPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKK
        MA+S   P+  AA    PSRLQRRAPASLQI+RSDWKVAIPLLSPLVSP SSP +I +W T DS    S +SSSSH     HHHHHHKES+PEK PVFKK
Subjt:  MADS-HPPNSPAA---TPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKK

Query:  WQHPAAPFHYDSGARAPR-FVPV
        WQHPAAPFHYDSG+RAPR FVPV
Subjt:  WQHPAAPFHYDSGARAPR-FVPV

A0A6J1H320 uncharacterized protein At4g14450, chloroplastic-like3.5e-2460.18Show/hide
Query:  HPPNSPAATPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHPAAPF
        HPP  P   P   + RAPASLQINR DWKVAIPLL+PLVSP SSPK+I +W+ P+S + SS +S             +HKES+PEK PVFKKWQHPAAPF
Subjt:  HPPNSPAATPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHPAAPF

Query:  HYDSGARAPRFVP
         YDSG   PRF+P
Subjt:  HYDSGARAPRFVP

A0A6J1KKB8 uncharacterized protein At4g14450, chloroplastic-like1.1e-3373.98Show/hide
Query:  MADSHPPNSPAAT----PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKK
        MA+S    S AA     PSRLQRRAPASLQI+RSDWKVAIPLLSPLVSP SSP +I +W T DS    S +SSSSHHH   HHHHHHKES+PEK PVFKK
Subjt:  MADSHPPNSPAAT----PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKK

Query:  WQHPAAPFHYDSGARAPR-FVPV
        WQHPAAPFHYDSG+RAPR FVPV
Subjt:  WQHPAAPFHYDSGARAPR-FVPV

SwissProt top hitse value%identityAlignment
Q6NN02 Uncharacterized protein At4g14450, chloroplastic5.8e-0836.79Show/hide
Query:  SRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHPAAPFHYDSGARA
        S+LQRRAP+ +    + S+W VAIPLLSPL    +S  D      P ++                       E + +K PVFKKWQHPA+PF Y+     
Subjt:  SRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHPAAPFHYDSGARA

Query:  PRFVPV
        P F+ V
Subjt:  PRFVPV

Arabidopsis top hitse value%identityAlignment
AT1G04330.1 unknown protein3.7e-1042.55Show/hide
Query:  SRLQRRAPASLQIN--RSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHPAAPFHY
        SRLQRRAP  L+IN   ++WKVAIPLLSP  SP   P  +                        +         + EK PVFKKWQHPAAPF+Y
Subjt:  SRLQRRAPASLQIN--RSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHPAAPFHY

AT3G23170.1 unknown protein8.9e-1242.73Show/hide
Query:  PSRLQRRAPASLQI----NRSDWKVAIPLLSPL-VSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHPAAPFHYDS
        PSRL +R PA   +      ++W  AIPLLSPL +SP SSP D      P   +  ST  +                   EK PVFKKWQHPAAPF+Y+S
Subjt:  PSRLQRRAPASLQI----NRSDWKVAIPLLSPL-VSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHPAAPFHYDS

Query:  GARAPRFVPV
            P FVPV
Subjt:  GARAPRFVPV

AT4G14450.1 unknown protein4.1e-0936.79Show/hide
Query:  SRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHPAAPFHYDSGARA
        S+LQRRAP+ +    + S+W VAIPLLSPL    +S  D      P ++                       E + +K PVFKKWQHPA+PF Y+     
Subjt:  SRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHPAAPFHYDSGARA

Query:  PRFVPV
        P F+ V
Subjt:  PRFVPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGACTCCCACCCACCAAACTCCCCCGCCGCTACCCCTAGCCGTCTTCAGCGCCGCGCTCCGGCATCCCTCCAAATCAATCGCTCCGATTGGAAGGTCGCCATCCC
TCTCTTGTCCCCCCTCGTCTCTCCTTCTTCCTCTCCCAAAGATATCCACAGTTGGAGTACCCCCGATTCAAGACAACCTTCCTCAACTACTTCTTCTTCTTCTCATCATC
ATCACCTTCTTCATCACCATCACCATCATAAAGAATCCGACCCGGAGAAGGCGCCGGTCTTCAAGAAATGGCAGCATCCGGCGGCTCCATTTCATTACGATTCCGGTGCT
AGGGCTCCCAGATTTGTACCCGTTTAG
mRNA sequenceShow/hide mRNA sequence
TTTAGAAGTAATTTTAAAGTGCAATATTGTGGGATGGAGAAGAAGTGGTAATGTAAAGGCACGTGCGAGGAGAAGTAGGAGGCAGTTATTGTGGAGGTCCCAAGTAGAGC
ACTAAAAATCGTGCTACCCACATGCCTTCTTTTCTCTCCCTATAATAACCCCTTTTTCTCTCCCTCAATCCTTCTTATCTTCTACTTTCATCTCCTTTCCCCCTTTCTCT
TCTTTTTTATCTCATGGCCGACTCCCACCCACCAAACTCCCCCGCCGCTACCCCTAGCCGTCTTCAGCGCCGCGCTCCGGCATCCCTCCAAATCAATCGCTCCGATTGGA
AGGTCGCCATCCCTCTCTTGTCCCCCCTCGTCTCTCCTTCTTCCTCTCCCAAAGATATCCACAGTTGGAGTACCCCCGATTCAAGACAACCTTCCTCAACTACTTCTTCT
TCTTCTCATCATCATCACCTTCTTCATCACCATCACCATCATAAAGAATCCGACCCGGAGAAGGCGCCGGTCTTCAAGAAATGGCAGCATCCGGCGGCTCCATTTCATTA
CGATTCCGGTGCTAGGGCTCCCAGATTTGTACCCGTTTAGATTTTTGTTTTATATTCAAAGAAAATAAAATCTCTTGAATTTGATCTCTAGATCCAACGCTCTCAGTTTG
AGGAGCTTATTGACTGCAACTTATGCTTAACCACACTCGAATATTTGTACATTGCTTTTCTTGTTATTTATGAATTGCTCACATCACTCATTACTCATTACAGTGCTTAA
CGTTTAGATTGAAAGTCTCATTTGTTAATCAATCATTTACGTGTCGTACTACCAACGCCA
Protein sequenceShow/hide protein sequence
MADSHPPNSPAATPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVFKKWQHPAAPFHYDSGA
RAPRFVPV