; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI02G11110 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G11110
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description50S ribosomal protein L24
Genome locationChr2:11338564..11346241
RNA-Seq ExpressionCSPI02G11110
SyntenyCSPI02G11110
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR003256 - Ribosomal protein L24
IPR005824 - KOW
IPR005825 - Ribosomal protein L24/L26, conserved site
IPR008991 - Translation protein SH3-like domain superfamily
IPR014722 - Ribosomal protein L2, domain 2
IPR041988 - Ribosomal protein L26/L24, KOW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008449336.1 PREDICTED: 50S ribosomal protein L24 [Cucumis melo]3.8e-8497.48Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG

Query:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
        SKVRV+RGLEASGS+IPRPEILKIR+SPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
Subjt:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL

XP_011649176.1 uncharacterized protein LOC101215964 [Cucumis sativus]2.6e-85100Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
        MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG

Query:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
        SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
Subjt:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL

XP_022146016.1 uncharacterized protein LOC111015327 [Momordica charantia]3.7e-7991.19Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQV+DP TGKPCKVG RYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG

Query:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
        SKVRV+RG+ ASGS+IPRPEILKIR++PRPTVAGPKDTPMDVVLEKTYD KTGKGMP+L
Subjt:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL

XP_022931187.1 uncharacterized protein LOC111437445 [Cucurbita moschata]1.6e-7991.82Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQV+DP TGKPCKVG RYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG

Query:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
        SKVRV+RG+ ASGS+IPRPEILKIR++PRPTVAGPKDTPMDVVLEK+YD KTGKGMP+L
Subjt:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL

XP_038889029.1 50S ribosomal protein L24 [Benincasa hispida]7.4e-8093.08Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQV+DPVTGKPCKVG RYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG

Query:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
        SKVRV+RG+ ASGS+IPR EILKIR++PRPTVAGPKDTPMDVVLEKTYD KTGKGMPEL
Subjt:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL

TrEMBL top hitse value%identityAlignment
A0A0A0LIP5 KOW domain-containing protein1.3e-85100Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
        MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG

Query:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
        SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
Subjt:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL

A0A1S3BL65 50S ribosomal protein L241.8e-8497.48Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG

Query:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
        SKVRV+RGLEASGS+IPRPEILKIR+SPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
Subjt:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL

A0A6J1EXQ8 uncharacterized protein LOC1114374457.9e-8091.82Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQV+DP TGKPCKVG RYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG

Query:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
        SKVRV+RG+ ASGS+IPRPEILKIR++PRPTVAGPKDTPMDVVLEK+YD KTGKGMP+L
Subjt:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL

A0A6J1K0T3 uncharacterized protein LOC1114913637.9e-8091.82Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQV+DP TGKPCKVG RYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG

Query:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
        SKVRV+RG+ ASGS+IPRPEILKIR++PRPTVAGPKDTPMDVVLEK+YD KTGKGMP+L
Subjt:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL

B5AJV4 Ribosomal protein L241.8e-8497.48Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG

Query:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
        SKVRV+RGLEASGS+IPRPEILKIR+SPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
Subjt:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL

SwissProt top hitse value%identityAlignment
A8F2D6 50S ribosomal protein L242.3e-2353.4Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASG
        K+ +GD V++I GK KG+ G I +V    ++VIV G NLVKKH K  Q  EGGI T E P+H+SN+  IDP TG P KV +++LEDGSKVRVA+    SG
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASG

Query:  SVI
         +I
Subjt:  SVI

C3PP96 50S ribosomal protein L242.3e-2352.43Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASG
        K+ +GD V++I GK KG+ G I +V    ++VIV G N+VKKH K  Q  EGGI T E P+H+SN+  IDP TG P KV +++LEDGSKVRVA+    SG
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASG

Query:  SVI
         +I
Subjt:  SVI

Q4UMR8 50S ribosomal protein L241.3e-2353.4Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASG
        K+ +GD V++I GK KG+ G I +V    ++VIV G NLVKKH K  Q  EGGI T E P+H+SN+  IDP TG P KV +++LEDGSKVRVA+    SG
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASG

Query:  SVI
         +I
Subjt:  SVI

Q92GX7 50S ribosomal protein L242.3e-2352.43Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASG
        K+ +GD V++I GK KG+ G I +V    ++VIV G N+VKKH K  Q  EGGI T E P+H+SN+  IDP TG P KV +++LEDGSKVRVA+    SG
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASG

Query:  SVI
         +I
Subjt:  SVI

Q9ZCR6 50S ribosomal protein L241.7e-2352.43Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASG
        K+ +GD V+II GK KG+ G + +V   +N V+V G NLVKKH K  +  EGGI T E+P+H+SN+  IDP TG P KV +++LEDGSKVRVA+    SG
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASG

Query:  SVI
         +I
Subjt:  SVI

Arabidopsis top hitse value%identityAlignment
AT5G23535.1 KOW domain-containing protein1.8e-7683.65Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETG IKRVIR+QNRVIVEGKNL+KKHIK G  HEGGIFTVEAPLH SNVQV+DPVTG+PCKVG +YLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDG

Query:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
        +KVRVARG   SGS+IPRPEILKIR++PRPT AGPKDTPM+ V E+TYD KTGKGMP+L
Subjt:  SKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL

AT5G54600.1 Translation protein SH3-like family protein1.4e-1237.5Show/hide
Query:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVR
        GD V +I G+DKG+ G + ++    + ++++  NL  KH+K + +G  G I  +EAP+H SNV +         +VG++ LEDG KVR
Subjt:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVR

AT5G54600.2 Translation protein SH3-like family protein6.8e-0734.48Show/hide
Query:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVR
        GD V +I G+DKG+ G + ++  T N  I                  G I  +EAP+H SNV +         +VG++ LEDG KVR
Subjt:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGGAAGGCTGCTCAAAAGCTTATCAGGCACTGGAAAATTCTTAGAGGAGATAATGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTAATTAAGCG
TGTTATTCGCACTCAAAATCGTGTTATTGTTGAGGGAAAAAATCTGGTTAAAAAACACATAAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACAGTTGAAGCTCCCC
TCCATGTATCAAATGTCCAAGTTATTGATCCAGTAACAGGGAAGCCTTGTAAGGTTGGTTATAGATATCTTGAAGATGGTTCTAAGGTACGAGTTGCAAGAGGATTGGAA
GCCTCTGGATCTGTAATTCCTCGCCCGGAGATCTTAAAGATAAGGAGTAGTCCAAGACCTACAGTTGCTGGCCCCAAGGATACTCCAATGGATGTGGTGCTGGAGAAAAC
TTATGATCCTAAAACAGGGAAGGGCATGCCTGAACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATTCGCACTCGGACTACTCTCTCAGTCGTCGTGCCGTCAGTCTCTCCTAGCCACCGTTCGCGCCGCCGCCGTTCTCTCTCTCACTCTCAATCGCCGGTTGCCGCTCACTG
TCGTACCTGGGTTTCTCTGGATCTCAATTAACCCACTTGTCTTAGTTTGCTGGAGTAGCTTGTGCAGATATTGGCAGCAGTAGGTTTGGTATTTGCATTTCATTTAAATG
GGTTGGAAGGCTGCTCAAAAGCTTATCAGGCACTGGAAAATTCTTAGAGGAGATAATGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTAATTAAGCGTGT
TATTCGCACTCAAAATCGTGTTATTGTTGAGGGAAAAAATCTGGTTAAAAAACACATAAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACAGTTGAAGCTCCCCTCC
ATGTATCAAATGTCCAAGTTATTGATCCAGTAACAGGGAAGCCTTGTAAGGTTGGTTATAGATATCTTGAAGATGGTTCTAAGGTACGAGTTGCAAGAGGATTGGAAGCC
TCTGGATCTGTAATTCCTCGCCCGGAGATCTTAAAGATAAGGAGTAGTCCAAGACCTACAGTTGCTGGCCCCAAGGATACTCCAATGGATGTGGTGCTGGAGAAAACTTA
TGATCCTAAAACAGGGAAGGGCATGCCTGAACTTTAA
Protein sequenceShow/hide protein sequence
MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLE
ASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL