; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI02G11130 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G11130
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCST complex subunit STN1
Genome locationChr2:11375196..11376187
RNA-Seq ExpressionCSPI02G11130
SyntenyCSPI02G11130
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057432.1 CST complex subunit STN1 [Cucumis melo var. makuwa]1.5e-8696.43Show/hide
Query:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRIL
        MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRIL
Subjt:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRIL

Query:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT
         DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP PT
Subjt:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT

XP_004145384.1 CST complex subunit STN1 [Cucumis sativus]3.7e-90100Show/hide
Query:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRIL
        MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRIL
Subjt:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRIL

Query:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT
        GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT
Subjt:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT

XP_008449339.1 PREDICTED: CST complex subunit STN1 [Cucumis melo]1.5e-8696.43Show/hide
Query:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRIL
        MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRIL
Subjt:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRIL

Query:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT
         DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP PT
Subjt:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT

XP_022963452.1 LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata]3.5e-7281.18Show/hide
Query:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQ---TSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDV
        MNQ+R  +FSLY TH+KLL FDLNSL Q   +SSSD+VSFSR+GYAVSC EIVGVVVFRDLKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH  DV
Subjt:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQ---TSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDV

Query:  RILGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTP
        RI+G+MATHFAAQIRVGIV RVRG++SSYRG+VQ+TVSDVVVE+DPNAEILHWLD MRLA+KCYDLSP P
Subjt:  RILGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTP

XP_023553655.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo]1.6e-7281.76Show/hide
Query:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQ---TSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDV
        MNQ+R  +FSLY TH+KLL FDLNSL Q   +SSSD+VSFSR+GYAVSC E+VGVVVFRDLKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH  DV
Subjt:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQ---TSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDV

Query:  RILGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTP
        RI+G+MATHFAAQIRVGIV RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD MRLA+KCYDLSP P
Subjt:  RILGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTP

TrEMBL top hitse value%identityAlignment
A0A0A0LNV0 OB domain-containing protein1.8e-90100Show/hide
Query:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRIL
        MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRIL
Subjt:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRIL

Query:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT
        GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT
Subjt:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT

A0A1S3BLT5 CST complex subunit STN17.1e-8796.43Show/hide
Query:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRIL
        MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRIL
Subjt:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRIL

Query:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT
         DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP PT
Subjt:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT

A0A5D3E3H2 CST complex subunit STN17.1e-8796.43Show/hide
Query:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRIL
        MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRIL
Subjt:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRIL

Query:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT
         DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSP PT
Subjt:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT

A0A6J1HFA9 LOW QUALITY PROTEIN: CST complex subunit STN11.7e-7281.18Show/hide
Query:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQ---TSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDV
        MNQ+R  +FSLY TH+KLL FDLNSL Q   +SSSD+VSFSR+GYAVSC EIVGVVVFRDLKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH  DV
Subjt:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQ---TSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDV

Query:  RILGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTP
        RI+G+MATHFAAQIRVGIV RVRG++SSYRG+VQ+TVSDVVVE+DPNAEILHWLD MRLA+KCYDLSP P
Subjt:  RILGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTP

A0A6J1HUX0 CST complex subunit STN16.4e-6480.89Show/hide
Query:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQ---TSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDV
        MNQ+R  +FSLY TH+KLL FDLNSL Q   +SSSD+VSFSR+G+AVSC EIVGVVV RDLKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH  DV
Subjt:  MNQRRRFSFSLYQTHVKLLAFDLNSLNQ---TSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDV

Query:  RILGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSM
        RI+G+MATHFAAQIRVGIV RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD M
Subjt:  RILGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSM

SwissProt top hitse value%identityAlignment
Q08DB2 CST complex subunit STN11.2e-0625.31Show/hide
Query:  LYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWL---NHLTSSYFASRHHQDVRILGDM----
        ++    KL   D+  L ++     V F   G+ +   +I+G V+    K + F  + VDD T  + CI W    N  +SS  A+   +++ +   +    
Subjt:  LYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWL---NHLTSSYFASRHHQDVRILGDM----

Query:  -ATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDP--NAEILHWLDSMRLAMKCYD
              A++ +G ++RVRG +  +RG  +I  +     DDP  N +I   L+   +  K YD
Subjt:  -ATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDP--NAEILHWLDSMRLAMKCYD

Q9LMK5 CST complex subunit STN11.3e-3754.9Show/hide
Query:  SLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFA
        SL  TH KL+A D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF VDDGT CV C++WLN LTSSYF+      + +L   A   A
Subjt:  SLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFA

Query:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY
        AQIR+G V RVRG++ SYRG++QIT +  V E DPNAEILHWL+ ++L   CY
Subjt:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY

Arabidopsis top hitse value%identityAlignment
AT1G07130.1 Nucleic acid-binding, OB-fold-like protein9.3e-3954.9Show/hide
Query:  SLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFA
        SL  TH KL+A D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF VDDGT CV C++WLN LTSSYF+      + +L   A   A
Subjt:  SLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFA

Query:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY
        AQIR+G V RVRG++ SYRG++QIT +  V E DPNAEILHWL+ ++L   CY
Subjt:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCY

AT2G24490.1 replicon protein A22.5e-0425.2Show/hide
Query:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRGM
        SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W+    S  F +R  + V              R G  VR+ G L +++G 
Subjt:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRGM

Query:  VQITVSDVVVEDDPNAEILHWLD
         Q+ V  V    D N    H+++
Subjt:  VQITVSDVVVEDDPNAEILHWLD

AT2G24490.2 replicon protein A22.5e-0425.2Show/hide
Query:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRGM
        SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W+    S  F +R  + V              R G  VR+ G L +++G 
Subjt:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRGM

Query:  VQITVSDVVVEDDPNAEILHWLD
         Q+ V  V    D N    H+++
Subjt:  VQITVSDVVVEDDPNAEILHWLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCAACGGCGACGTTTCTCCTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGCTTTCGACTTAAATTCCCTCAACCAAACTTCCTCTTCTGATTCAGTTTCTTT
CTCTCGCAAAGGCTACGCCGTTTCCTGTACAGAGATTGTTGGCGTTGTGGTCTTCCGTGACCTGAAACCTAACAGGTTTCTTAAATTCTCCGTTGACGATGGTACTGCCT
GTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCAAGATGTTCGTATTCTGGGAGATATGGCGACCCATTTCGCAGCTCAA
ATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAAT
TCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTACACCCACTTAG
mRNA sequenceShow/hide mRNA sequence
GGTGTTAGGACTTAGGAATAGAGTAAAGTAAGAGGTGGCCCCTCCTAAAGATATTGGCTTCGTTTGTCAGATGTCTCTTCTTTTCCCTTTGTAGGGTGTAGCCCTTTCTC
AATCTTCTTAATGGGCCTATCTATGAACTTCAATTGGGCTCTCTTGATCCTTCAATAAAAAAGCCCAATGGGCTACAAATTTAAATCAACCACAATCGGAGAAACTGCAC
ATTTGGTTTCCGATGAACCAACGGCGACGTTTCTCCTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGCTTTCGACTTAAATTCCCTCAACCAAACTTCCTCTTCTGA
TTCAGTTTCTTTCTCTCGCAAAGGCTACGCCGTTTCCTGTACAGAGATTGTTGGCGTTGTGGTCTTCCGTGACCTGAAACCTAACAGGTTTCTTAAATTCTCCGTTGACG
ATGGTACTGCCTGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCAAGATGTTCGTATTCTGGGAGATATGGCGACCCAT
TTCGCAGCTCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCC
AAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTACACCCACTTAGCTGTAGATTCCATGGCTTTAAAATGCCATCT
CTAGTCTTCTGATTTCCCTTCTTTTTTTTTCCTTTCTGAAATGCTAAAAAGATTCCACTTTTTGTTGTTTACTGTACATAATTTTGCTCAACAGCTTGGCCTTCGAAATG
ATTATATAATAATATTGAAATTAAGTTGCCTCCACCGACTCTGTTTACTGTTTAGTTTGATGAGAATTGGTAATGTTCAATGAGGAACCTCCAACTGATGATTTTCTTTT
TC
Protein sequenceShow/hide protein sequence
MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQ
IRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT