; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI02G11610 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G11610
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionpolyadenylate-binding protein RBP47
Genome locationChr2:11949758..11953674
RNA-Seq ExpressionCSPI02G11610
SyntenyCSPI02G11610
Gene Ontology termsGO:0005829 - cytosol (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145357.2 polyadenylate-binding protein RBP47 [Cucumis sativus]1.9e-38100Show/hide
Query:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS
        KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS
Subjt:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS

XP_008459212.1 PREDICTED: polyadenylate-binding protein RBP47 [Cucumis melo]3.1e-3695.18Show/hide
Query:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPT--AAAAAVNGSS
        KNAEDA+QGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPN+HPT  AAAAAVNGSS
Subjt:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPT--AAAAAVNGSS

XP_022148600.1 polyadenylate-binding protein RBP47 [Momordica charantia]4.6e-3290.12Show/hide
Query:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS
        KNAEDAIQGLNGTVIGKQT+RLSWGRSTGNKQWRGDSNNQWNGGRYGGQ YGGY GYYSVPQHQD NM+ T AAA VNGSS
Subjt:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS

XP_022986538.1 polyadenylate-binding protein RBP47-like [Cucurbita maxima]1.1e-3392.59Show/hide
Query:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS
        KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQ YGGYGGYYS+PQHQD NMH  AAAAAVNG+S
Subjt:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS

XP_038901011.1 polyadenylate-binding protein RBP47 [Benincasa hispida]9.9e-3595.06Show/hide
Query:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS
        KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQD NMHPT  AA+VNGSS
Subjt:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS

TrEMBL top hitse value%identityAlignment
A0A0A0LKZ0 Uncharacterized protein9.3e-39100Show/hide
Query:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS
        KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS
Subjt:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS

A0A1S3C9N4 polyadenylate-binding protein RBP471.5e-3695.18Show/hide
Query:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPT--AAAAAVNGSS
        KNAEDA+QGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPN+HPT  AAAAAVNGSS
Subjt:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPT--AAAAAVNGSS

A0A6J1D3C6 polyadenylate-binding protein RBP472.2e-3290.12Show/hide
Query:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS
        KNAEDAIQGLNGTVIGKQT+RLSWGRSTGNKQWRGDSNNQWNGGRYGGQ YGGY GYYSVPQHQD NM+ T AAA VNGSS
Subjt:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS

A0A6J1FUF1 polyadenylate-binding protein RBP47-like3.8e-3291.36Show/hide
Query:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS
        KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQ YGGYGGYY +PQHQD NMH  AAAAAVNG+S
Subjt:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS

A0A6J1JGT7 polyadenylate-binding protein RBP47-like5.3e-3492.59Show/hide
Query:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS
        KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQ YGGYGGYYS+PQHQD NMH  AAAAAVNG+S
Subjt:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS

SwissProt top hitse value%identityAlignment
F4I3B3 Polyadenylate-binding protein RBP47A6.9e-1561.25Show/hide
Query:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGS
        ++AE+AI  LNGTVIGK TVRLSWGRS  NKQWR DS NQWNGG   GQ Y    GY     +QD NM+ TAAAA    S
Subjt:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGS

Q0WW84 Polyadenylate-binding protein RBP47B2.0e-1463.77Show/hide
Query:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMH
        K+AEDAI+ LNGTVIGK TVRLSWGRS  NKQWRGDS  QWNGG   G  Y   GGY +   H   N H
Subjt:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMH

Q9LEB3 Polyadenylate-binding protein RBP471.4e-1560.27Show/hide
Query:  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAA
        +A++AIQ L+G +IGKQ VRLSWGRS  NKQ R DS +QWNGG  G Q+YGGYG  Y   Q+QD  M+ T AA
Subjt:  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAA

Q9SX79 Polyadenylate-binding protein RBP47C2.0e-1463.38Show/hide
Query:  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTA
        NAE+A++ LNGTVIGKQTVRLSWGR+  NKQ R    NQW    YGGQ Y GYG  Y VPQ  DP M+P A
Subjt:  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTA

Q9SX80 Polyadenylate-binding protein RBP47C'2.0e-1463.38Show/hide
Query:  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTA
        NAE+A++ LNGTVIGKQTVRLSWGR+  NKQ R    NQW    YGGQ Y GYG  Y VPQ  DP M+P A
Subjt:  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTA

Arabidopsis top hitse value%identityAlignment
AT1G47490.1 RNA-binding protein 47C1.4e-1563.38Show/hide
Query:  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTA
        NAE+A++ LNGTVIGKQTVRLSWGR+  NKQ R    NQW    YGGQ Y GYG  Y VPQ  DP M+P A
Subjt:  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTA

AT1G47500.1 RNA-binding protein 47C'1.4e-1563.38Show/hide
Query:  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTA
        NAE+A++ LNGTVIGKQTVRLSWGR+  NKQ R    NQW    YGGQ Y GYG  Y VPQ  DP M+P A
Subjt:  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTA

AT1G49600.1 RNA-binding protein 47A4.9e-1661.25Show/hide
Query:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGS
        ++AE+AI  LNGTVIGK TVRLSWGRS  NKQWR DS NQWNGG   GQ Y    GY     +QD NM+ TAAAA    S
Subjt:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGS

AT3G19130.1 RNA-binding protein 47B1.4e-1563.77Show/hide
Query:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMH
        K+AEDAI+ LNGTVIGK TVRLSWGRS  NKQWRGDS  QWNGG   G  Y   GGY +   H   N H
Subjt:  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMH

AT4G27000.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.8e-0847.76Show/hide
Query:  AEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMH
        AE A+  LNGT +G Q++RLSWGRS  NKQ + D      GG Y G    GY  Y   P  QDPN +
Subjt:  AEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGAGTAGCCCATCTGTCTTATAAGGAGTGCGAGTCCCTTTGGTTTTTCCAACTTGAGATTCTCAACATCTCATCATGCCCCCTAAAGATGGTGCCTCTTTGGGT
TCAACAACGTGAGATTCTCAACATCTTAACAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAA
GTACAGGGAACAAGCAGTGGAGAGGTGATTCAAATAACCAATGGAATGGTGGACGTTATGGTGGGCAAAGCTATGGTGGATATGGTGGCTATTACTCTGTACCACAGCAT
CAGGACCCAAACATGCATCCCACAGCTGCTGCTGCTGCAGTTAATGGCTCATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGAGTAGCCCATCTGTCTTATAAGGAGTGCGAGTCCCTTTGGTTTTTCCAACTTGAGATTCTCAACATCTCATCATGCCCCCTAAAGATGGTGCCTCTTTGGGT
TCAACAACGTGAGATTCTCAACATCTTAACAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAA
GTACAGGGAACAAGCAGTGGAGAGGTGATTCAAATAACCAATGGAATGGTGGACGTTATGGTGGGCAAAGCTATGGTGGATATGGTGGCTATTACTCTGTACCACAGCAT
CAGGACCCAAACATGCATCCCACAGCTGCTGCTGCTGCAGTTAATGGCTCATCTTGAGAAGAGAAGAATATGGCCATTCCCACCATTGAACTGAAAATCTGAGCATTCAA
AACACCAATCTCTTAGCTACAAATATATAATATATCTATATATATATATATTGACTTGGTATTAGAGAGAACTTATTTAAGTTGTGGTTAGCTGGATCTTTTATTTGAAT
AATCATATGGCTTGATAACATTTATTACTTCCTTGCGTGAGAGTCTTTTAGACTGCTTGTAGGCTTTAGCTCATCTGAACAATTTTGGGGTATCTGGGTGGATTTTTCTT
GTCTTAGTGGGTATTTTTTATTTTTTATTTTTTATTTAAGTTTTAATTTACAGATCATAATTATATTACTACTATTACTACTATTATTATTTCATTTGTAGTATAGATGC
TTTAATTGAACCTCATAATCCTAATGGCATGGAATTCTTAGTTCTCTACAG
Protein sequenceShow/hide protein sequence
MRGVAHLSYKECESLWFFQLEILNISSCPLKMVPLWVQQREILNILTKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQH
QDPNMHPTAAAAAVNGSS