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CSPI02G12050 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G12050
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr2:12353731..12354402
RNA-Seq ExpressionCSPI02G12050
SyntenyCSPI02G12050
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0008622 - epsilon DNA polymerase complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036566.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-5863.41Show/hide
Query:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY
        M ++NG NPESW+Y A+H+F+IN+ A  EKVK+ V+SFG D V+WFRW+NNRKKI+SWEDLK++MF+HF+ +G+GSLGARLI I+QDG Y DYLKK L+Y
Subjt:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY

Query:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEIQG
        SAPLP+MAES+L+DAF+TGL   L+AEV+SRHP  L++CMREAQ+V+D +  + LALN+   +G
Subjt:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEIQG

TYK22652.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-5964.63Show/hide
Query:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY
        M ++NG NPESW+Y AEH+F+IN+ A  EKVK+AV+SFG D V+WFRW+NNRKKI+SWEDLK++MF+HF+  G+GSLGARLI I+QDG Y DYLKK L+Y
Subjt:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY

Query:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEIQG
        SAPLP+MAES+L+DAF+TGL + L+AEV+SRHP  L++CMREAQ+V+D +  + LALN+   +G
Subjt:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEIQG

XP_031742100.1 uncharacterized protein LOC116404055 [Cucumis sativus]3.5e-5764.2Show/hide
Query:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY
        M ++ G+NPESW Y AEHFF+IND  ++EKVK+AV+SFGQ++VDWFRW+N RK++ SWEDLK++MFD F  TG+ SLGARLI I+Q+ SY +Y+KK + Y
Subjt:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY

Query:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEI
        SAPLPDMAES+L+DAF+TGL   L+AEV+SRHP+ L+ECM+EAQL ND N  L LA+ EL+I
Subjt:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEI

XP_031745419.1 uncharacterized protein LOC116405630 [Cucumis sativus]3.5e-5764.2Show/hide
Query:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY
        M ++ G+NPESW Y AEHFF+IND  ++EKVK+AV+SFGQ++VDWFRW+N RK++ SWEDLK++MFD F  TG+ SLGARLI I+Q+ SY +Y+KK + Y
Subjt:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY

Query:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEI
        SAPLPDMAES+L+DAF+TGL   L+AEV+SRHP+ L+ECM+EAQL ND N  L LA+ EL+I
Subjt:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEI

XP_031745726.1 uncharacterized protein K02A2.6-like [Cucumis sativus]1.1e-5865.43Show/hide
Query:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY
        M ++ G+NPESW Y AEHFF+IND  ++EKVK+AV+SFGQ++VDWFRW+N RK++ SWEDLK++MFD F  TG+ SLGARLI I+Q+GSY +Y+KK + Y
Subjt:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY

Query:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEI
        SAPLPDMAES+L+DAF+TGL   L+AEV+SRHP+ L+ECM+EAQLVND N  L LA+ EL+I
Subjt:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEI

TrEMBL top hitse value%identityAlignment
A0A5A7T3B8 Retrotransposon protein1.2e-5863.41Show/hide
Query:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY
        M ++NG NPESW+Y A+H+F+IN+ A  EKVK+ V+SFG D V+WFRW+NNRKKI+SWEDLK++MF+HF+ +G+GSLGARLI I+QDG Y DYLKK L+Y
Subjt:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY

Query:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEIQG
        SAPLP+MAES+L+DAF+TGL   L+AEV+SRHP  L++CMREAQ+V+D +  + LALN+   +G
Subjt:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEIQG

A0A5A7TH70 DNA polymerase epsilon catalytic subunit6.5e-5760.71Show/hide
Query:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY
        + ++NG NPE+W+Y AEH+F+IN+    EKVK+AV+SFG ++V+WF W+NNRKK+ +WEDLK++MF+HF+  G+GSLGARLI I+QDG Y DYLKK L+Y
Subjt:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY

Query:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEIQGTNTI
        SAPLP+MAES+L+DAFVTGL   L+AEV SRHP  L+ECMREAQ+V+D +  +NLALN+    G   +
Subjt:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEIQGTNTI

A0A5D3C142 Retrotransposable element Tf26.5e-5760.71Show/hide
Query:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY
        + ++NG NPE+W+Y AEH+F+IN+    EKVK+AV+SFG ++V+WF W+NNRKK+ +WEDLK++MF+HF+  G+GSLGARLI I+QDG Y DYLKK L+Y
Subjt:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY

Query:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEIQGTNTI
        SAPLP+MAES+L+DAFVTGL   L+AEV SRHP  L+ECMREAQ+V+D +  +NLALN+    G   +
Subjt:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEIQGTNTI

A0A5D3DGC7 Retrotransposon protein8.2e-6064.63Show/hide
Query:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY
        M ++NG NPESW+Y AEH+F+IN+ A  EKVK+AV+SFG D V+WFRW+NNRKKI+SWEDLK++MF+HF+  G+GSLGARLI I+QDG Y DYLKK L+Y
Subjt:  MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKY

Query:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEIQG
        SAPLP+MAES+L+DAF+TGL + L+AEV+SRHP  L++CMREAQ+V+D +  + LALN+   +G
Subjt:  SAPLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEIQG

A0A5D3DUJ0 Ty3/gypsy retrotransposon protein2.2e-5762.05Show/hide
Query:  IYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKYSA
        ++NG NPE+W+Y AEH+F+IN+    EKVK+AV+SFG D+V+WFRW+NNRKK+ +WEDLK++MF+HF+  G+GSLGARLI I+QDG Y DYLKK L+YSA
Subjt:  IYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKYSA

Query:  PLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEIQGTNTI
        PLP+MAES+L+DAFVTGL   L+AEV SRHP  L+ECMREAQ+V+D +  +NLAL++    G   +
Subjt:  PLPDMAESILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEIQGTNTI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATCTACAATGGGATGAACCCGGAATCATGGGTGTACCCAGCAGAGCATTTCTTCGAAATTAATGACTTTGCAAAAAGTGAGAAAGTAAAAATTGCAGTGTTAAG
CTTCGGGCAAGACAAAGTCGATTGGTTCCGTTGGAACAATAATAGGAAGAAGATCACATCCTGGGAAGACCTTAAACAAAAAATGTTCGATCACTTTCAGCCGACTGGGA
AAGGTAGTTTGGGGGCCAGACTAATCCATATTCAACAAGATGGTTCCTATGGAGATTATTTGAAGAAAGTTCTGAAGTATTCAGCTCCCTTACCGGACATGGCAGAAAGC
ATATTGATGGATGCCTTTGTGACGGGGCTGTTGCTGGAATTGAGGGCAGAGGTGGTAAGTCGGCACCCTAAGAACTTGGATGAATGTATGAGAGAAGCCCAACTGGTGAA
TGATCACAACCCTGTCCTAAATTTGGCTTTGAACGAGTTGGAGATTCAAGGGACTAATACGATCCTCCTCAAGGTGAACCTCAAAACAAACCTCCATCAGGGAGAGTATA
GGTCTCTAGCATAG
mRNA sequenceShow/hide mRNA sequence
GGAAATGGATGAAGGGGAATCTGAGCCGTTGACAGAAAATATGTGACTTCAGATAAAAGCAAATACGAAAAACTTGAGATGTCGATCTACAATGGGATGAACCCGGAATC
ATGGGTGTACCCAGCAGAGCATTTCTTCGAAATTAATGACTTTGCAAAAAGTGAGAAAGTAAAAATTGCAGTGTTAAGCTTCGGGCAAGACAAAGTCGATTGGTTCCGTT
GGAACAATAATAGGAAGAAGATCACATCCTGGGAAGACCTTAAACAAAAAATGTTCGATCACTTTCAGCCGACTGGGAAAGGTAGTTTGGGGGCCAGACTAATCCATATT
CAACAAGATGGTTCCTATGGAGATTATTTGAAGAAAGTTCTGAAGTATTCAGCTCCCTTACCGGACATGGCAGAAAGCATATTGATGGATGCCTTTGTGACGGGGCTGTT
GCTGGAATTGAGGGCAGAGGTGGTAAGTCGGCACCCTAAGAACTTGGATGAATGTATGAGAGAAGCCCAACTGGTGAATGATCACAACCCTGTCCTAAATTTGGCTTTGA
ACGAGTTGGAGATTCAAGGGACTAATACGATCCTCCTCAAGGTGAACCTCAAAACAAACCTCCATCAGGGAGAGTATAGGTCTCTAGCATAGTATATGTCCACAAACAAT
ATCGAACTTAGG
Protein sequenceShow/hide protein sequence
MSIYNGMNPESWVYPAEHFFEINDFAKSEKVKIAVLSFGQDKVDWFRWNNNRKKITSWEDLKQKMFDHFQPTGKGSLGARLIHIQQDGSYGDYLKKVLKYSAPLPDMAES
ILMDAFVTGLLLELRAEVVSRHPKNLDECMREAQLVNDHNPVLNLALNELEIQGTNTILLKVNLKTNLHQGEYRSLA