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CSPI02G12200 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G12200
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiontranscription factor RADIALIS-like
Genome locationChr2:12489618..12491990
RNA-Seq ExpressionCSPI02G12200
SyntenyCSPI02G12200
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571117.1 Protein RADIALIS-like 2, partial [Cucurbita argyrosperma subsp. sororia]1.5e-3884.31Show/hide
Query:  MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNM
        MAS+SSS  SSSWTP QNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S++S   TSNANI DQEQRMRN+
Subjt:  MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNM

Query:  KL
        KL
Subjt:  KL

XP_004148844.1 transcription factor RADIALIS [Cucumis sativus]5.6e-49100Show/hide
Query:  MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL
        MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL
Subjt:  MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL

Query:  H
        H
Subjt:  H

XP_008460938.1 PREDICTED: protein RADIALIS-like 2 [Cucumis melo]2.1e-4389.09Show/hide
Query:  MASISSS-----SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSP----TTSNANIKDQ
        MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS     T+SNANIKDQ
Subjt:  MASISSS-----SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSP----TTSNANIKDQ

Query:  EQRMRNMKLH
        EQRMRNMKLH
Subjt:  EQRMRNMKLH

XP_023513343.1 protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]1.2e-3883.33Show/hide
Query:  MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNM
        MAS+SSS  SSSWTP QNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S++S+  TSNAN+ DQEQRMRN+
Subjt:  MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNM

Query:  KL
        KL
Subjt:  KL

XP_038902123.1 protein RADIALIS-like 2 [Benincasa hispida]2.4e-3983.5Show/hide
Query:  MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNM
        MASISSS  S SWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKT DEVKRHFD LVEDVKHIESGRVPFP YTS+S+  T+ N N+ DQEQRMRN+
Subjt:  MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNM

Query:  KLH
        KLH
Subjt:  KLH

TrEMBL top hitse value%identityAlignment
A0A0A0LL58 MYB transcription factor MYB1422.7e-49100Show/hide
Query:  MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL
        MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL
Subjt:  MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL

Query:  H
        H
Subjt:  H

A0A1S3CDK8 protein RADIALIS-like 21.0e-4389.09Show/hide
Query:  MASISSS-----SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSP----TTSNANIKDQ
        MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS     T+SNANIKDQ
Subjt:  MASISSS-----SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSP----TTSNANIKDQ

Query:  EQRMRNMKLH
        EQRMRNMKLH
Subjt:  EQRMRNMKLH

A0A6J1FXX9 protein RADIALIS-like 24.8e-3882.35Show/hide
Query:  MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNM
        MAS++SS  SSSWTP QNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S++S+  TSNANI DQEQRMR++
Subjt:  MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNM

Query:  KL
        KL
Subjt:  KL

A0A6J1G543 transcription factor RADIALIS-like5.5e-3482.52Show/hide
Query:  MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS-PTTSNANIKDQEQRMRN
        MASISSS  S+SW+PNQNKAFE ALAVFDKDTPDRWLNVAKAV G KT DEVKRHF+ LVEDVKHIESG VPFP YTSSSSS P TS+ NI  QEQRMRN
Subjt:  MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS-PTTSNANIKDQEQRMRN

Query:  MKL
        MKL
Subjt:  MKL

A0A6J1JBS7 protein RADIALIS-like 26.3e-3882.35Show/hide
Query:  MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNM
        MAS+SSS  SSSWTP +NKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVK HFD LVEDVKHIE G VPFP Y+S++S+  TSNANI DQEQRMRN+
Subjt:  MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNM

Query:  KL
        KL
Subjt:  KL

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 15.0e-2457.29Show/hide
Query:  SSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL
        S SS SWT  QNKAFE+ALA +D+DTP+RW NVAK V GGKT +EVKRH++ LV+D+  IE+G VPFP Y +S      +N  +  +E+RMRNM+L
Subjt:  SSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL

Q1A173 Protein RADIALIS-like 66.1e-2259.41Show/hide
Query:  MASISSSS-SSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMK
        MAS S SS S WT +QNK FERALAV+DKDTPDRW NVAKAV GGKT +EVKRH+D LVED+ +IE+GRVP P Y +  S+  + N       ++M+N+K
Subjt:  MASISSSS-SSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMK

Query:  L
        +
Subjt:  L

Q58FS3 Transcription factor RADIALIS2.6e-2557Show/hide
Query:  MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL
        MAS   S   W+  +NKAFERALAV+DKDTPDRW NVA+AV  G+TP+EVK+H++ LVED+K+IESG+VPFP Y        T+  N+K  E+R RN+K+
Subjt:  MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL

Q8GW75 Protein RADIALIS-like 56.7e-2158.82Show/hide
Query:  MASIS-SSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQR-MRNM
        MAS S SSSSSWT  QNK FERALAV+DKDTPDRW NVAKAV G K+ +EVKRH+D LVED+ +IE   VP PKY +      + +  I D + R M+NM
Subjt:  MASIS-SSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQR-MRNM

Query:  KL
        ++
Subjt:  KL

Q9SIJ5 Protein RADIALIS-like 24.5e-2560.61Show/hide
Query:  SSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNAN---IKDQEQRMRNMKL
        S  S SWT  QNKAFERALAV+D+DTPDRW NVA+AV GGKTP+E KR +D LV D++ IE+G VPFP Y +     TT N+N   ++D+E+RMR+MKL
Subjt:  SSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNAN---IKDQEQRMRNMKL

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 54.8e-2258.82Show/hide
Query:  MASIS-SSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQR-MRNM
        MAS S SSSSSWT  QNK FERALAV+DKDTPDRW NVAKAV G K+ +EVKRH+D LVED+ +IE   VP PKY +      + +  I D + R M+NM
Subjt:  MASIS-SSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQR-MRNM

Query:  KL
        ++
Subjt:  KL

AT1G75250.1 RAD-like 69.6e-2366.28Show/hide
Query:  MASISSSS-SSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSN
        MAS S SS S WT +QNK FERALAV+DKDTPDRW NVAKAV GGKT +EVKRH+D LVED+ +IE+GRVP P Y +  S+  + N
Subjt:  MASISSSS-SSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSN

AT1G75250.2 RAD-like 64.3e-2359.41Show/hide
Query:  MASISSSS-SSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMK
        MAS S SS S WT +QNK FERALAV+DKDTPDRW NVAKAV GGKT +EVKRH+D LVED+ +IE+GRVP P Y +  S+  + N       ++M+N+K
Subjt:  MASISSSS-SSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMK

Query:  L
        +
Subjt:  L

AT2G21650.1 Homeodomain-like superfamily protein3.2e-2660.61Show/hide
Query:  SSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNAN---IKDQEQRMRNMKL
        S  S SWT  QNKAFERALAV+D+DTPDRW NVA+AV GGKTP+E KR +D LV D++ IE+G VPFP Y +     TT N+N   ++D+E+RMR+MKL
Subjt:  SSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNAN---IKDQEQRMRNMKL

AT4G39250.1 RAD-like 13.5e-2557.29Show/hide
Query:  SSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL
        S SS SWT  QNKAFE+ALA +D+DTP+RW NVAK V GGKT +EVKRH++ LV+D+  IE+G VPFP Y +S      +N  +  +E+RMRNM+L
Subjt:  SSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATTTCCTCCTCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGT
AGCCAAAGCCGTCGGCGGTGGCAAGACCCCCGACGAAGTCAAGAGACACTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCCGGCCGCGTTCCTTTCCCTAAAT
ACACCTCCTCCTCCTCCTCCCCTACAACCTCCAATGCTAACATCAAAGACCAAGAACAAAGGATGAGAAACATGAAACTTCATTAA
mRNA sequenceShow/hide mRNA sequence
GGTTCTTAAGTAAACAAATCATTCAAAATAATTTCTCACTCTCCCTTTTTCCAAAGATTTTCCCTCTCTCTGCCCCCACTTATAAAATCCCTTCCCCCTTCTCCATACTC
TTTCTTCTTCACCCCCTTTTCAATTAATCTCTTTTACCACTTTTGCCCCTCAACAATGGCTTCCATTTCCTCCTCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCT
TCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTAGCCAAAGCCGTCGGCGGTGGCAAGACCCCCGACGAAGTCAAGAGACACTTCGAC
CGTCTCGTCGAAGATGTCAAACACATTGAATCCGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCCCTACAACCTCCAATGCTAACATCAAAGACCAAGA
ACAAAGGATGAGAAACATGAAACTTCATTAAATTGGTTGAAATTGAAAGCAAATGGATGGAATTAAGAAGAATGAAAGTGGATTGGTGGTTGCTGTTTTTGCCTTTAAGA
TAACAAAAAGAAGAAAAAAAAAATTAATGTAGCCAAATTTGCAATTTTATGTTTTTTTTTTCTTCTCTTCCCCTTGAAGGTGTATTTGCCCAACTAAAGAGCTAATCAAT
GTAGAAGAATCAATTTGATTTACGTTTTTTTCATCTACTAATTTCCCCCT
Protein sequenceShow/hide protein sequence
MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKLH