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CSPI02G12810 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G12810
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGag/pol protein
Genome locationChr2:13021367..13021630
RNA-Seq ExpressionCSPI02G12810
SyntenyCSPI02G12810
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033202.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-0768.89Show/hide
Query:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDR
        H +VS  RSH  I I+CLLVCPGATFP +GCIIGF T RTP +DR
Subjt:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDR
KAA0041922.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-1176.6Show/hide
Query:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDRIS
        HPT+SSI  HREI I+ LLVCP AT+PSEGCII FGTPRTP LDR S
Subjt:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDRIS
KAA0042320.1 gag/pol protein [Cucumis melo var. makuwa]2.8e-1386.67Show/hide
Query:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDR
        HPTVS I SHREI I+ LLVCPGATFPSEGCIIGFGTPRTP LDR
Subjt:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDR
KAA0055183.1 gag/pol protein [Cucumis melo var. makuwa]9.4e-0971.74Show/hide
Query:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDRI
        HPTVSSI  HREI I+ LLVCPG T  SEGCII   TPRTP LDR+
Subjt:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDRI
TrEMBL top hitse value%identityAlignment
A0A5A7SPT6 Gag/pol protein8.6e-0868.89Show/hide
Query:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDR
        H +VS  RSH  I I+CLLVCPGATFP +GCIIGF T RTP +DR
Subjt:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDR
A0A5D3CWX9 Gag/pol protein1.4e-1386.67Show/hide
Query:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDR
        HPTVS I SHREI I+ LLVCPGATFPSEGCIIGFGTPRTP LDR
Subjt:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDR
A0A5D3D345 Gag/pol protein1.3e-1176.6Show/hide
Query:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDRIS
        HPT+SSI  HREI I+ LLVCP AT+PSEGCII FGTPRTP LDR S
Subjt:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDRIS
A0A5D3DHM9 Gag/pol protein5.8e-0482.14Show/hide
Query:  LLVCPGATFPSEGCIIGFGTPRTPKLDR
        LLVC  ATFPSEGCIIGFGT R+PK+DR
Subjt:  LLVCPGATFPSEGCIIGFGTPRTPKLDR
A0A5D3DQ34 Gag/pol protein4.5e-0971.74Show/hide
Query:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDRI
        HPTVSSI  HREI I+ LLVCPG T  SEGCII   TPRTP LDR+
Subjt:  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDRI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGGCTTTGTGCCGTGCATAGGAGCGGCCTCCCTTCGGAGAGTGTTTGCATGGATCAAAATCAAGGGGAATAGGGGAACACATCCCACGGTCTCTTCCATTAGGTC
GCACCGTGAGATTTCTATAATATGCCTGCTTGTCTGCCCTGGAGCGACGTTCCCTTCGGAGGGTTGTATTATAGGATTCGGAACACCGCGAACTCCAAAACTGGATAGGA
TTTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGGGCTTTGTGCCGTGCATAGGAGCGGCCTCCCTTCGGAGAGTGTTTGCATGGATCAAAATCAAGGGGAATAGGGGAACACATCCCACGGTCTCTTCCATTAGGTC
GCACCGTGAGATTTCTATAATATGCCTGCTTGTCTGCCCTGGAGCGACGTTCCCTTCGGAGGGTTGTATTATAGGATTCGGAACACCGCGAACTCCAAAACTGGATAGGA
TTTCTTAG
Protein sequenceShow/hide protein sequence
MQGFVPCIGAASLRRVFAWIKIKGNRGTHPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDRIS