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CSPI02G12830 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G12830
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description30S ribosomal protein S19, chloroplastic
Genome locationChr2:13047674..13049858
RNA-Seq ExpressionCSPI02G12830
SyntenyCSPI02G12830
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002222 - Ribosomal protein S19/S15
IPR023575 - Ribosomal protein S19/S15, superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACU24256.1 unknown [Glycine max]9.3e-2696.83Show/hide
Query:  RLALQLILVKGFRLYSFQLPDSKSPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP
        RLALQ ILVKGFRLYSFQLPDS SPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP
Subjt:  RLALQLILVKGFRLYSFQLPDSKSPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP

BAU03538.1 hypothetical protein VIGAN_UM125500, partial [Vigna angularis var. angularis]9.3e-2696.83Show/hide
Query:  RLALQLILVKGFRLYSFQLPDSKSPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP
        RLALQ ILVKGFRLYSFQLPDS SPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP
Subjt:  RLALQLILVKGFRLYSFQLPDSKSPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP

GAO47202.1 hypothetical protein G7K_1412-t1 [Saitoella complicata NRRL Y-17804]6.0e-2549.66Show/hide
Query:  NFTSDYEMRMPPTVPVNHYSDPEGQQNR---------------IDILCERIAGKRDEPTG--AHHRRTDRP-NPRLALQLILVKGFRLYSFQLPD-----
        NFTSD  + MPPT+P+NHY  P  QQNR               +  L   I   + E  G  + HR  DRP  P+L L  +L          L D     
Subjt:  NFTSDYEMRMPPTVPVNHYSDPEGQQNR---------------IDILCERIAGKRDEPTG--AHHRRTDRP-NPRLALQLILVKGFRLYSFQLPD-----

Query:  -----SKSPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP
              KSPVLLFIVTTSPC+DWVICAPAAFLGCGSRFSGSLSGIEP
Subjt:  -----SKSPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP

KEH16986.1 hypothetical protein MTR_0055s0030 [Medicago truncatula]4.9e-4376.61Show/hide
Query:  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDIL-C---------------ERIAGKRDEPTGAHHRRTDRPNPR----LALQLILVKGFRLYSFQLPDSKS
        NFTSDYE++MPPTVPVNHYSDPEGQ NRI IL C               ERIAG+RDEPTGAHHRRTDRPNPR    LALQ IL+KGFRLYSFQLPDS S
Subjt:  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDIL-C---------------ERIAGKRDEPTGAHHRRTDRPNPR----LALQLILVKGFRLYSFQLPDSKS

Query:  PVLLFIVTTSPCQDWVICAPAAFL
        PVLLFIVTTSPC DWVICAPAAFL
Subjt:  PVLLFIVTTSPCQDWVICAPAAFL

KEH17031.1 hypothetical protein MTR_0052s0170 [Medicago truncatula]2.1e-3062.2Show/hide
Query:  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILCERIAGKRDEPTGAHH----RRTDRP-------------------NPRLALQLILVKGFRLYSFQLPD
        NFTSDYE++MPPTVPVNHYSDPEGQ NRI ILC   AG    P  A        T +P                     RLALQ IL+KGFRLYSFQLPD
Subjt:  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILCERIAGKRDEPTGAHH----RRTDRP-------------------NPRLALQLILVKGFRLYSFQLPD

Query:  SKSPVLLFIVTTSPCQDWVICAPAAFL
        S SPVLLFIVTTSPC DWVICAPAAFL
Subjt:  SKSPVLLFIVTTSPCQDWVICAPAAFL

TrEMBL top hitse value%identityAlignment
A0A072TIE8 Uncharacterized protein2.4e-4376.61Show/hide
Query:  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDIL-C---------------ERIAGKRDEPTGAHHRRTDRPNPR----LALQLILVKGFRLYSFQLPDSKS
        NFTSDYE++MPPTVPVNHYSDPEGQ NRI IL C               ERIAG+RDEPTGAHHRRTDRPNPR    LALQ IL+KGFRLYSFQLPDS S
Subjt:  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDIL-C---------------ERIAGKRDEPTGAHHRRTDRPNPR----LALQLILVKGFRLYSFQLPDSKS

Query:  PVLLFIVTTSPCQDWVICAPAAFL
        PVLLFIVTTSPC DWVICAPAAFL
Subjt:  PVLLFIVTTSPCQDWVICAPAAFL

A0A0R0GHF8 Uncharacterized protein1.7e-4178.15Show/hide
Query:  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILCERIAGKRDEPTGAHHRRTDRPNPRLALQLILVKGFRLYSFQLPDSKSPVLLFIVTTSPCQDWVICAP
        NFTSDYE+RMPPTVPVNHYSDPEGQ NRI IL         E   A    T     RLALQ ILVKGFRLYSFQLPDS SPVLLFIVTTSPCQDWVICAP
Subjt:  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILCERIAGKRDEPTGAHHRRTDRPNPRLALQLILVKGFRLYSFQLPDSKSPVLLFIVTTSPCQDWVICAP

Query:  AAFLGCGSRFSGSLSGIEP
        AAFLGCGSRFSGSLSGIEP
Subjt:  AAFLGCGSRFSGSLSGIEP

A0A0R0GR22 Uncharacterized protein1.7e-4178.15Show/hide
Query:  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILCERIAGKRDEPTGAHHRRTDRPNPRLALQLILVKGFRLYSFQLPDSKSPVLLFIVTTSPCQDWVICAP
        NFTSDYE+RMPPTVPVNHYSDPEGQ NRI IL         E   A    T     RLALQ ILVKGFRLYSFQLPDS SPVLLFIVTTSPCQDWVICAP
Subjt:  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILCERIAGKRDEPTGAHHRRTDRPNPRLALQLILVKGFRLYSFQLPDSKSPVLLFIVTTSPCQDWVICAP

Query:  AAFLGCGSRFSGSLSGIEP
        AAFLGCGSRFSGSLSGIEP
Subjt:  AAFLGCGSRFSGSLSGIEP

A0A0R0GUK0 Uncharacterized protein1.7e-3678.5Show/hide
Query:  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDIL-C---------------ERIAGKRDEPTGAHHRRTDRPNPRLALQLILVKGFRLYSFQLPDSKSPVLL
        NFTSDYE+RMPPTVPVNHYSDPEGQ NRI IL C               ERIAG+RDEPTGAH RRTDRPNPRLALQ ILVKGFRLYSFQLPDS SPVLL
Subjt:  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDIL-C---------------ERIAGKRDEPTGAHHRRTDRPNPRLALQLILVKGFRLYSFQLPDSKSPVLL

Query:  FIVTTSP
        FIVTTSP
Subjt:  FIVTTSP

A0A368UH67 Uncharacterized protein1.7e-3678.5Show/hide
Query:  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDIL-C---------------ERIAGKRDEPTGAHHRRTDRPNPRLALQLILVKGFRLYSFQLPDSKSPVLL
        NFTSDYE+RMPPTVPVNHYSDPEGQ NRI IL C               ERIAG+RDEPTGAH RRTDRPNPRLALQ ILVKGFRLYSFQLPDS SPVLL
Subjt:  NFTSDYEMRMPPTVPVNHYSDPEGQQNRIDIL-C---------------ERIAGKRDEPTGAHHRRTDRPNPRLALQLILVKGFRLYSFQLPDSKSPVLL

Query:  FIVTTSP
        FIVTTSP
Subjt:  FIVTTSP

SwissProt top hitse value%identityAlignment
A6H5M2 30S ribosomal protein S19, chloroplastic8.5e-0691.3Show/hide
Query:  MIGHTIAVHNGKDHLPVYITDRM
        MIGHTIAVHNGK+HLP+YITDRM
Subjt:  MIGHTIAVHNGKDHLPVYITDRM

P31162 30S ribosomal protein S19, chloroplastic8.5e-0691.3Show/hide
Query:  MIGHTIAVHNGKDHLPVYITDRM
        MIGHTIA+HNGK+HLPVYITDRM
Subjt:  MIGHTIAVHNGKDHLPVYITDRM

Q09WX7 30S ribosomal protein S19, chloroplastic8.5e-0691.3Show/hide
Query:  MIGHTIAVHNGKDHLPVYITDRM
        MIGHTIAVHNGK+HLP+YITDRM
Subjt:  MIGHTIAVHNGKDHLPVYITDRM

Q0G9H9 30S ribosomal protein S19, chloroplastic3.8e-0691.3Show/hide
Query:  MIGHTIAVHNGKDHLPVYITDRM
        MIGHTIA+HNGKDHLP+YITDRM
Subjt:  MIGHTIAVHNGKDHLPVYITDRM

Q4VZM8 30S ribosomal protein S19, chloroplastic2.2e-06100Show/hide
Query:  MIGHTIAVHNGKDHLPVYITDRM
        MIGHTIAVHNGKDHLPVYITDRM
Subjt:  MIGHTIAVHNGKDHLPVYITDRM

Arabidopsis top hitse value%identityAlignment
ATCG00820.1 ribosomal protein S194.3e-0578.26Show/hide
Query:  MIGHTIAVHNGKDHLPVYITDRM
        MIGHTIA+HNG++HLPVYI D M
Subjt:  MIGHTIAVHNGKDHLPVYITDRM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGGCATACTATTGCTGTTCATAATGGAAAGGACCATTTGCCTGTTTATATAACGGATCGCATGAATTTCACCTCTGACTATGAAATGAGAATGCCCCCGACTGT
CCCTGTTAATCATTACTCCGATCCCGAAGGCCAACAGAATAGGATTGACATCCTATGCGAGCGCATTGCCGGCAAAAGGGACGAGCCGACCGGTGCTCACCATAGGCGGA
CCGATCGACCCAACCCAAGACTTGCCCTCCAATTGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCGAAGAGCCCGGTATTGTTATTTATTGTC
ACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGGGCATACTATTGCTGTTCATAATGGAAAGGACCATTTGCCTGTTTATATAACGGATCGCATGAATTTCACCTCTGACTATGAAATGAGAATGCCCCCGACTGT
CCCTGTTAATCATTACTCCGATCCCGAAGGCCAACAGAATAGGATTGACATCCTATGCGAGCGCATTGCCGGCAAAAGGGACGAGCCGACCGGTGCTCACCATAGGCGGA
CCGATCGACCCAACCCAAGACTTGCCCTCCAATTGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCGAAGAGCCCGGTATTGTTATTTATTGTC
ACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAA
Protein sequenceShow/hide protein sequence
MIGHTIAVHNGKDHLPVYITDRMNFTSDYEMRMPPTVPVNHYSDPEGQQNRIDILCERIAGKRDEPTGAHHRRTDRPNPRLALQLILVKGFRLYSFQLPDSKSPVLLFIV
TTSPCQDWVICAPAAFLGCGSRFSGSLSGIEP