; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI02G14460 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G14460
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionThioredoxin-like protein YLS8
Genome locationChr2:14263110..14265830
RNA-Seq ExpressionCSPI02G14460
SyntenyCSPI02G14460
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domainsIPR004123 - Dim1 family
IPR036249 - Thioredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045799.1 Thioredoxin-like protein YLS8 [Cucumis melo var. makuwa]8.9e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

KJB77370.1 hypothetical protein B456_012G134400 [Gossypium raimondii]8.9e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

MBA0750948.1 hypothetical protein [Gossypium gossypioides]8.9e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

XP_004148041.1 thioredoxin-like protein YLS8 [Cucumis sativus]8.9e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

XP_040967487.1 thioredoxin-like protein YLS8 [Gossypium hirsutum]8.9e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

TrEMBL top hitse value%identityAlignment
A0A0B0MLM5 Thioredoxin-like protein 4A4.3e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

A0A6J1I6E9 thioredoxin-like protein YLS84.3e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

A0A6P4D2R7 thioredoxin-like protein YLS8 isoform X14.3e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

A0A7I8L052 Hypothetical protein4.3e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

S4U0X2 YLS84.3e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

SwissProt top hitse value%identityAlignment
P83876 Thioredoxin-like protein 4A2.0e-7185.92Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWA++DKQE +DIIETVYRGARKGRGLV++PKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

P83877 Thioredoxin-like protein 4A2.0e-7185.92Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWA++DKQE +DIIETVYRGARKGRGLV++PKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

P87215 Mitosis protein dim16.4e-6276.76Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSY LPHLHSGW VDQAIL+E+ERLVVIRFG D DE C++ DEVL  +AE + N AVIYLVDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINW L+DKQE IDIIET++RGARKG+GLVI+PKDYST++RY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

Q75BD8 Spliceosomal protein DIB11.8e-5167.39Show/hide
Query:  SYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK
        S  LPHLHSGW VDQAI+ EEERLVVIRFG D D +CM MDE+L S+AE + NFA IY+ D TEVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK
Subjt:  SYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK

Query:  INWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTK
        +N+ + +KQE IDIIETV+RGAR+ +GLV++P DY+ K
Subjt:  INWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTK

Q9FE62 Thioredoxin-like protein YLS82.6e-7999.3Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQ+ILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

Arabidopsis top hitse value%identityAlignment
AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP4.8e-2037.96Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGT
        MSYLL  L +   +D+ I    + ++V+RFG   D  C+Q DE+LA     +  FA + LVD+ +  D     + +D    PST+ FFF   H+ +D GT
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGT

Query:  GNNNKINWALKDKQEFIDIIETVYRGARKGRGLVIAP
         ++ K   A   KQ+FID++E +YRGA KG+ +V  P
Subjt:  GNNNKINWALKDKQEFIDIIETVYRGARKGRGLVIAP

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP1.8e-8099.3Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQ+ILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTACTTGCTGCCACATCTTCATTCAGGATGGGCTGTTGACCAGGCAATCCTTGCAGAAGAAGAACGTCTTGTGGTCATTCGTTTCGGTCATGATTGGGATGAAAC
TTGTATGCAGATGGATGAAGTGTTGGCCTCGGTTGCAGAGACTATTAAGAACTTTGCTGTAATATACCTTGTGGATATCACAGAGGTTCCTGATTTCAACACAATGTACG
AGCTTTATGATCCATCCACTGTTATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGAAACAACAATAAGATAAACTGGGCACTTAAGGATAAGCAG
GAGTTCATTGATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCGACCAAATATCGCTACTAA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAATGCTCATTGAACCACCTAGTCTGATACTATGTTAAATTTTGATAGTATAAAGTTCCATCTCAAAATCAATTGACAATAAAAGGAGTAACACATTTATCTTAT
ATGGAGTACGAGTCTTAGCGTGGGACTCTCGACTTCTCCAATCGTTTACTTTTGGTGAGGAAAGAGGGAAGGAGAGGAGGAAGAAGAACGAAGAAGATAGGAAAAAAACG
ACCCGACCGAATGCGAAAAAAGTGTTAGTTTTCATTTTTTTAAAGAAAAATATTAGAAAAAAAAGTTTAATCGAACCCTAAAGCCCTTCGTCATTTTCCTCTCTCCCTTG
GTTAGCCTCCGACGTCTTCTACGCTCCCGACGGTGTACTGCTGCGGCATCCGACGGGACCAACTATTCAAATCGCTTAATTCTTACGATCCACGCTCCGACCGATCTCAA
TTCTTGACACCCACGATCTCACGGCTGCAGATCTGCAAGTTTGAACGCCTTCGAACTTAGTTCGTCAAGCTCAAGCTCGTTTGGTGAGAAATAGTGGAAGCTAGTTACTG
AGCAAGAGATGTCGTACTTGCTGCCACATCTTCATTCAGGATGGGCTGTTGACCAGGCAATCCTTGCAGAAGAAGAACGTCTTGTGGTCATTCGTTTCGGTCATGATTGG
GATGAAACTTGTATGCAGATGGATGAAGTGTTGGCCTCGGTTGCAGAGACTATTAAGAACTTTGCTGTAATATACCTTGTGGATATCACAGAGGTTCCTGATTTCAACAC
AATGTACGAGCTTTATGATCCATCCACTGTTATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGAAACAACAATAAGATAAACTGGGCACTTAAGG
ATAAGCAGGAGTTCATTGATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCGACCAAATATCGCTACTAAGAT
TTTCTGCTGCATCTGAAAGTTCGTATTGATCTTAAACATGTACTATATGACATTAATAACCTCCTAAGCAAAAGTAATGGTTTATTCTGGTATGTTAAGGTACTACCCTG
TTTGTGAATAAAAGTGTATGGTACACAAATTTAACGTTTATTTCTAATGTTGAATTGAATCTTAATTATGCTATATTTATGATGGAATATACTGTCCTTTTCCATTTTTA
TATGGTAAAATTAAAGCTATATATGTAACATTCCTAATCTAAGATTTGGAATTT
Protein sequenceShow/hide protein sequence
MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQ
EFIDIIETVYRGARKGRGLVIAPKDYSTKYRY