CuGenDBv2

Gene ID	CSPI02G14600
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase
Genome location	Chr2:14341713..14343813
RNA-Seq Expression	CSPI02G14600
Synteny	CSPI02G14600
Gene Ontology terms	GO:0016874 - ligase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605258.1 hypothetical protein SDJN03_02575, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-68

81.46

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Query:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS
        MSD  +TDSDAPEEFTAEQG+QQDEEIRKVQKES ARV+REGKERRR WAEKKTPR SKKGE VED+AE PR++D++SKLG LPSN+VQLL +REKQVFS
Subjt:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS

Query:  SDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK
        SD GDEKPA K K KRKK+KSSGI+TVLLNER PS CLQNSLEFLKKRKMN+ RSS+VL N NQA RLLSSSGLLTKK
Subjt:  SDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK

KAG7035221.1 hypothetical protein SDJN02_02016, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.5e-69

82.02

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Query:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS
        MSD  +TDSDAPEEFTAEQG+QQDEEIRKVQKES ARV+REGKERRR WAEKKTPR SKKGE VED+AE PR++D++SKLG LPSN+VQLL +REKQVFS
Subjt:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS

Query:  SDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK
        SD GDEKPA K K KRKK+KSSGIETVLLNER PS CLQNSLEFLKKRKMN+ RSS+VL N NQA RLLSSSGLLTKK
Subjt:  SDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK

XP_004148046.1 uncharacterized protein LOC101208336 [Cucumis sativus]

2.0e-86

100

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Query:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS
        MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS
Subjt:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS

Query:  SDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK
        SDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK
Subjt:  SDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK

XP_008457855.1 PREDICTED: uncharacterized protein LOC103497440 [Cucumis melo]

1.4e-82

96.09

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Query:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS
        MSDREETDSDAPEEFTAEQGVQQDEEIRKVQ ESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDK+SKLGTLPSN+VQLLVDREKQVFS
Subjt:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS

Query:  SDSGDEKPAIKPKQKRKKTK-SSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK
        SD GDEKPAIKPKQKRKKTK SSGIETVLL+ERTPSHCLQNSLEFLKKRKMNVARSSTVL+NPNQAFRLLSSSGLLTKK
Subjt:  SDSGDEKPAIKPKQKRKKTK-SSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK

XP_038901892.1 uncharacterized protein LOC120088571 [Benincasa hispida]

3.0e-74

88.27

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Query:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPR-NDDKISKLGTLPSNIVQLLVDREKQVF
        MSDRE+TDSDAPEEFTAEQGVQQDEEIRKVQKESKARV+REGKERRRLWAEKKTPRPSKKGE VEDLAEPPR + D+ISKLG LPSNIVQLLVDREKQVF
Subjt:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPR-NDDKISKLGTLPSNIVQLLVDREKQVF

Query:  SSDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK
        SSD  DEKPAIKPK KRKKTKSSGIETVLL+ERTPS CL NSLEFLKKRKMN+ RSS+VL NPNQA RLLS+SGLL KK
Subjt:  SSDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LM07 Uncharacterized protein

9.8e-87

100

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Query:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS
        MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS
Subjt:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS

Query:  SDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK
        SDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK
Subjt:  SDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK

A0A1S3C749 uncharacterized protein LOC103497440

6.6e-83

96.09

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Query:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS
        MSDREETDSDAPEEFTAEQGVQQDEEIRKVQ ESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDK+SKLGTLPSN+VQLLVDREKQVFS
Subjt:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS

Query:  SDSGDEKPAIKPKQKRKKTK-SSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK
        SD GDEKPAIKPKQKRKKTK SSGIETVLL+ERTPSHCLQNSLEFLKKRKMNVARSSTVL+NPNQAFRLLSSSGLLTKK
Subjt:  SDSGDEKPAIKPKQKRKKTK-SSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK

A0A5A7TWK6 Uncharacterized protein

6.6e-83

96.09

Show/hide

Query:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS
        MSDREETDSDAPEEFTAEQGVQQDEEIRKVQ ESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDK+SKLGTLPSN+VQLLVDREKQVFS
Subjt:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS

Query:  SDSGDEKPAIKPKQKRKKTK-SSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK
        SD GDEKPAIKPKQKRKKTK SSGIETVLL+ERTPSHCLQNSLEFLKKRKMNVARSSTVL+NPNQAFRLLSSSGLLTKK
Subjt:  SDSGDEKPAIKPKQKRKKTK-SSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK

A0A6J1DXW1 uncharacterized protein LOC111025162

2.7e-68

81.36

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Query:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS
        MSD E+TDSDAPEEFTAEQG+QQD+EI KVQ ESKARV+REGKERRRLWAEKKTPRPSKKGE VED+AE P + D+ SKLG LPSN+VQLL DREKQVFS
Subjt:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS

Query:  SDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTK
        SD GDEKPA KPK KRKKTKSSGIETV+LN+R P+ CLQNS+EFLKKRKMN+ RSS+VL NPNQA R LSSSGLLTK
Subjt:  SDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTK

A0A6J1G7P4 uncharacterized protein LOC111451498

2.1e-68

81.46

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Query:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS
        MSD  +TDSDAPEEFTAEQG+QQDEEIRKVQKES ARV+REGKERRR WAEKKTPR SKK E VED+AE PR++D++SKLG LPSN+VQLL +REKQVFS
Subjt:  MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS

Query:  SDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK
        SD GDEKPA K K KRKK+KSSGIETVLLNER PS CLQNSLEFLKKRKMN+ RSS+VL N NQA RLLSSSGLLTKK
Subjt:  SDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G37090.1 unknown protein

3.7e-30

45.9

Show/hide

Query:  MSDRE--ETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLA---EPPRNDDKISKLGTLPSNIVQLLVDRE
        MSD +  ++DSDAPEE T EQ   ++E + K+Q+E+K RV RE KERR+L AE+ T R S+K EI+ED+    EP  N + ++  G L  +I+  L +RE
Subjt:  MSDRE--ETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLA---EPPRNDDKISKLGTLPSNIVQLLVDRE

Query:  KQVFSSDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK
        KQ   SDS +E+  I    ++KK KSSGIETV+  E  P  CL+  L+FLK R+  V RSS+V+ N  QA RL + + L  K+
Subjt:  KQVFSSDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK

AT4G37090.2 unknown protein

9.2e-29

45.9

Show/hide

Query:  MSDRE--ETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLA---EPPRNDDKISKLGTLPSNIVQLLVDRE
        MSD +  ++DSDAPEE T EQ   ++E + K+Q+E+K RV RE KERR+L AE+ T R S+K EI+ED+    EP  N + ++  G L  +I+  L +RE
Subjt:  MSDRE--ETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLA---EPPRNDDKISKLGTLPSNIVQLLVDRE

Query:  KQVFSSDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK
        KQ   SDS +E+  I    ++KK KSSGIETV+  E  P  CL+  L+FLK R+  V RSS+V+ N  QA RL + + L  K+
Subjt:  KQVFSSDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCGGACAGAGAGGAAACCGATTCGGACGCTCCCGAGGAGTTCACCGCCGAGCAGGGAGTACAACAAGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAAGGCTAG
GGTTATTCGTGAAGGAAAAGAACGTCGTAGACTATGGGCTGAAAAGAAAACACCACGCCCATCTAAAAAGGGTGAAATCGTTGAAGATTTAGCAGAACCTCCTAGAAATG
ACGACAAAATTAGCAAATTGGGAACGCTTCCTAGTAATATAGTCCAACTGCTTGTAGACCGTGAGAAACAAGTTTTCTCATCAGATTCGGGCGATGAAAAGCCAGCAATT
AAACCAAAACAAAAGAGGAAGAAGACCAAAAGCTCCGGGATTGAAACGGTTCTTTTAAATGAAAGAACACCATCTCATTGTTTACAGAACTCCTTGGAATTTTTGAAGAA
AAGGAAGATGAATGTTGCAAGATCATCAACGGTTCTCAGCAATCCTAATCAAGCGTTCCGGCTACTTTCTTCATCTGGCTTACTAACGAAGAAATAG

mRNA sequence

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CTTCATAGAAACCCTAAAAGAAGAGTTGGGTTTTGATGTCGGACAGAGAGGAAACCGATTCGGACGCTCCCGAGGAGTTCACCGCCGAGCAGGGAGTACAACAAGATGAA
GAGATTAGAAAAGTTCAAAAAGAAAGTAAGGCTAGGGTTATTCGTGAAGGAAAAGAACGTCGTAGACTATGGGCTGAAAAGAAAACACCACGCCCATCTAAAAAGGGTGA
AATCGTTGAAGATTTAGCAGAACCTCCTAGAAATGACGACAAAATTAGCAAATTGGGAACGCTTCCTAGTAATATAGTCCAACTGCTTGTAGACCGTGAGAAACAAGTTT
TCTCATCAGATTCGGGCGATGAAAAGCCAGCAATTAAACCAAAACAAAAGAGGAAGAAGACCAAAAGCTCCGGGATTGAAACGGTTCTTTTAAATGAAAGAACACCATCT
CATTGTTTACAGAACTCCTTGGAATTTTTGAAGAAAAGGAAGATGAATGTTGCAAGATCATCAACGGTTCTCAGCAATCCTAATCAAGCGTTCCGGCTACTTTCTTCATC
TGGCTTACTAACGAAGAAATAGCATTTTTGTTTCGTAGTTTACTTATTGCATCTCTGTTAGTTTCGACAGGATAATGTAAAATTGTATTCGAGAATTGGTTGGCGAGGGC
TACAAAGGTTGTTGAGTTCTTATAGTGGTCATACCATAATAGAAATTTAAAATGGTGGGAGCATCTGATGTTGGTACATTAATGATTTTCATTATCTTGGTTCGATTACT
AGTGGCTTGATTTGAATATGTTTAAAAGTTTTTTAAAAA

Protein sequence

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MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFSSDSGDEKPAI
KPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK

CSPI02G14600 (gene) of Cucumber (PI 183967) v1 genome