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CSPI02G14780 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G14780
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr2:14453300..14453539
RNA-Seq ExpressionCSPI02G14780
SyntenyCSPI02G14780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048676.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.0e-0550Show/hide
Query:  LPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWS
        +P   K+ S NAPWRSI KG +W  S++ WK+++G   SFWH NW+
Subjt:  LPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWS

KAA0058105.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-0549.15Show/hide
Query:  DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL
        DLP+     S  APWRSI    +W KS  GW L+NG  +SFW+ NWS    L T YP L
Subjt:  DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL

KAA0065894.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-0542.37Show/hide
Query:  DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL
        D+PT  K+ ++  PWR I KG  W ++   WK++ G+ LSFW  NW+   PL + YP L
Subjt:  DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL

TYJ98385.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]1.3e-0546.15Show/hide
Query:  PTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT
        P+  KH    APWRSI KG +W + ++ WK++ G+ LSFWH  W    PL T
Subjt:  PTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-0549.15Show/hide
Query:  DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL
        DLP+     S  APWRSI    +W KS  GW L+NG  +SFW+ NWS    L T YP L
Subjt:  DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL

TrEMBL top hitse value%identityAlignment
A0A5A7U366 LINE-1 retrotransposable element ORF2 protein5.0e-0650Show/hide
Query:  LPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWS
        +P   K+ S NAPWRSI KG +W  S++ WK+++G   SFWH NW+
Subjt:  LPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWS

A0A5A7UWW1 LINE-1 retrotransposable element ORF2 protein8.4e-0649.15Show/hide
Query:  DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL
        DLP+     S  APWRSI    +W KS  GW L+NG  +SFW+ NWS    L T YP L
Subjt:  DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL

A0A5A7VF18 LINE-1 retrotransposable element ORF2 protein8.4e-0642.37Show/hide
Query:  DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL
        D+PT  K+ ++  PWR I KG  W ++   WK++ G+ LSFW  NW+   PL + YP L
Subjt:  DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL

A0A5D3BJ44 Retrotransposon protein, putative, unclassified6.5e-0646.15Show/hide
Query:  PTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT
        P+  KH    APWRSI KG +W + ++ WK++ G+ LSFWH  W    PL T
Subjt:  PTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT

A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein1.1e-0549.15Show/hide
Query:  DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL
        DLP+     S  APWRSI    +W KS  GW L+NG  +SFW+ NWS    L T YP L
Subjt:  DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATTTGCCAACCGTTGCTAAGCACAGAAGTCTCAATGCTCCATGGAGGTCCATCTGCAAAGGTTCAAACTGGTGTAAATCTCAATTGGGTTGGAAATTAAGCAA
TGGCAGGATGTTATCGTTTTGGCACAGAAACTGGAGCATTTATAGTCCTCTTTACACATATCCCTTTCTAGATTATATGCTCTCTCAACTCAGCAAAATGGCACCCTCAG
GGATACATGGAACTCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGATTTGCCAACCGTTGCTAAGCACAGAAGTCTCAATGCTCCATGGAGGTCCATCTGCAAAGGTTCAAACTGGTGTAAATCTCAATTGGGTTGGAAATTAAGCAA
TGGCAGGATGTTATCGTTTTGGCACAGAAACTGGAGCATTTATAGTCCTCTTTACACATATCCCTTTCTAGATTATATGCTCTCTCAACTCAGCAAAATGGCACCCTCAG
GGATACATGGAACTCTGTAA
Protein sequenceShow/hide protein sequence
MDDLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYTYPFLDYMLSQLSKMAPSGIHGTL