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CSPI02G16040 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G16040
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr2:15524871..15525798
RNA-Seq ExpressionCSPI02G16040
SyntenyCSPI02G16040
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055941.1 uncharacterized protein E6C27_scaffold319G00670 [Cucumis melo var. makuwa]3.0e-6882.89Show/hide
Query:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV
        MEERV ELDN+QK ++EMINGMSEDFR TLDVVRNEI +VN +++LTMRA+ANQAPAGGA++V K+K+PEPKPFCGARDAKALEN+IFD+EQYFKATNTV
Subjt:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV

Query:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK
        AEEAKVTLATMHLSEDAKLWWRSRY+DIQEGRC +DTWD+LKRELRSQF P+
Subjt:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK

TYK04141.1 uncharacterized protein E5676_scaffold148G00020 [Cucumis melo var. makuwa]3.9e-6882.24Show/hide
Query:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV
        MEERV ELDN+QK ++EMINGMSEDFR TLDVVRNEI +VN +++LTMRA+ANQAPAGGA++V K+K+PEPKPFCGARDAKALEN+IFD+EQYFKATNT+
Subjt:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV

Query:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK
        AEEAKVTLATMHLSEDAKLWWRSRY+DIQEGRC +DTWD+LKRELRSQF P+
Subjt:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK

TYK22948.1 uncharacterized protein E5676_scaffold386G00340 [Cucumis melo var. makuwa]1.3e-6882.89Show/hide
Query:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV
        MEERV ELDN+QK ++EMINGMSEDFRATLDVVRNEI +VN +++LTMRA+ANQAPAGGA++V K+K+PEPKPFCGARDAKALEN+IFD+EQYFKATNT+
Subjt:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV

Query:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK
        AEEAKVTLATMHLSEDAKLWWRSRY+DIQEGRC +DTWD+LKRELRSQF P+
Subjt:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK

TYK28147.1 uncharacterized protein E5676_scaffold289G00610 [Cucumis melo var. makuwa]3.0e-6882.89Show/hide
Query:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV
        MEERV ELDN+QK ++EMINGMSEDFR TLDVVRNEI +VN +++LTMRA+ANQAPAGGA++V K+K+PEPKPFCGARDAKALEN+IFD+EQYFKATNTV
Subjt:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV

Query:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK
        AEEAKVTLATMHLSEDAKLWWRSRY+DIQEGRC +DTWD+LKRELRSQF P+
Subjt:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK

XP_031745591.1 uncharacterized protein LOC116406038 isoform X1 [Cucumis sativus]8.1e-7492.76Show/hide
Query:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV
        MEERV+ELDNSQKDI+EMINGM+EDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGA+ +GKIKIPEPKPFCG RDAKALENFIFDIE+YFKATNTV
Subjt:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV

Query:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK
        AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRC IDTWDSLKRELRSQF P+
Subjt:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK

TrEMBL top hitse value%identityAlignment
A0A5A7UQU6 Retrotrans_gag domain-containing protein1.4e-6882.89Show/hide
Query:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV
        MEERV ELDN+QK ++EMINGMSEDFR TLDVVRNEI +VN +++LTMRA+ANQAPAGGA++V K+K+PEPKPFCGARDAKALEN+IFD+EQYFKATNTV
Subjt:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV

Query:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK
        AEEAKVTLATMHLSEDAKLWWRSRY+DIQEGRC +DTWD+LKRELRSQF P+
Subjt:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK

A0A5D3CCE2 Retrotrans_gag domain-containing protein1.9e-6882.24Show/hide
Query:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV
        MEERV ELDN+QK ++EMINGMSEDFR TLDVVRNEI +VN +++LTMRA+ANQAPAGGA++V K+K+PEPKPFCGARDAKALEN+IFD+EQYFKATNT+
Subjt:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV

Query:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK
        AEEAKVTLATMHLSEDAKLWWRSRY+DIQEGRC +DTWD+LKRELRSQF P+
Subjt:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK

A0A5D3DHI2 Retrotrans_gag domain-containing protein6.5e-6982.89Show/hide
Query:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV
        MEERV ELDN+QK ++EMINGMSEDFRATLDVVRNEI +VN +++LTMRA+ANQAPAGGA++V K+K+PEPKPFCGARDAKALEN+IFD+EQYFKATNT+
Subjt:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV

Query:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK
        AEEAKVTLATMHLSEDAKLWWRSRY+DIQEGRC +DTWD+LKRELRSQF P+
Subjt:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK

A0A5D3DWF4 Retrotrans_gag domain-containing protein1.4e-6882.89Show/hide
Query:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV
        MEERV ELDN+QK ++EMINGMSEDFR TLDVVRNEI +VN +++LTMRA+ANQAPAGGA++V K+K+PEPKPFCGARDAKALEN+IFD+EQYFKATNTV
Subjt:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV

Query:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK
        AEEAKVTLATMHLSEDAKLWWRSRY+DIQEGRC +DTWD+LKRELRSQF P+
Subjt:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK

A0A5D3E6S8 Retrotrans_gag domain-containing protein1.9e-6882.24Show/hide
Query:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV
        MEERV ELDN+QK ++EMINGMSEDFR TLDVVRNEI +VN +++LTMRA+ANQAPAGGA++V K+K+PEPKPFCGARDAKALEN+IFD+EQYFKATNT+
Subjt:  MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTV

Query:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK
        AEEAKVTLATMHLSEDAKLWWRSRY+DIQEGRC +DTWD+LKRELRSQF P+
Subjt:  AEEAKVTLATMHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGCGAGTTATGGAGTTAGATAACTCCCAGAAGGATATAATAGAAATGATAAATGGCATGTCAGAGGACTTTCGAGCCACCCTGGATGTCGTTAGAAATGAAAT
CGTAGAGGTGAACACGAAGGTGAACCTTACGATGCGAGCGTTGGCCAATCAAGCTCCAGCTGGAGGAGCGATGGCAGTTGGCAAGATAAAGATCCCGGAACCCAAGCCCT
TCTGTGGGGCAAGGGATGCAAAGGCATTGGAAAACTTTATCTTCGATATTGAGCAGTACTTTAAAGCCACAAACACCGTGGCAGAGGAAGCCAAGGTGACATTGGCAACC
ATGCATCTATCTGAGGATGCAAAGTTATGGTGGAGGTCCCGATACATTGACATTCAGGAAGGGCGTTGTGCAATAGATACGTGGGACAGTTTAAAGAGAGAACTCCGCTC
GCAGTTTTCCCCGAAAATGTCGACGTTCTGGCTCGACGGAAGCTGCGAGAATTAA
mRNA sequenceShow/hide mRNA sequence
TGCACCTAGGCTCCAGAGGACCAATGCGCCTTAGTGCGCCTTGAGCCTTCAAAAACACTGGGGACAGTTCATCGGGCTCTGTTGCCCGGATGGAGGAGCGAGTTATGGAG
TTAGATAACTCCCAGAAGGATATAATAGAAATGATAAATGGCATGTCAGAGGACTTTCGAGCCACCCTGGATGTCGTTAGAAATGAAATCGTAGAGGTGAACACGAAGGT
GAACCTTACGATGCGAGCGTTGGCCAATCAAGCTCCAGCTGGAGGAGCGATGGCAGTTGGCAAGATAAAGATCCCGGAACCCAAGCCCTTCTGTGGGGCAAGGGATGCAA
AGGCATTGGAAAACTTTATCTTCGATATTGAGCAGTACTTTAAAGCCACAAACACCGTGGCAGAGGAAGCCAAGGTGACATTGGCAACCATGCATCTATCTGAGGATGCA
AAGTTATGGTGGAGGTCCCGATACATTGACATTCAGGAAGGGCGTTGTGCAATAGATACGTGGGACAGTTTAAAGAGAGAACTCCGCTCGCAGTTTTCCCCGAAAATGTC
GACGTTCTGGCTCGACGGAAGCTGCGAGAATTAAAACACACTGGAACTATTCGGGAGTATGTGAGGGAATTCGCGGGGCTGATGTTAGATGTATCCGACATGACCGAAAA
GGATAAAATTTTCAGCTTTGTTGAAGGGTTGAAGCCGTGGGCAAGGACTAAGTTATACGAACAGAGAGTTCAAGACCTCGCGTCAGCCTATGCAATAGCGGAGCGTTTGT
TCGATCTGTCTGATGACACTCAAGAGACGAGGAGTCGTCAAAGCTCTTCACCTGGAAGAGACAGGAACGGCCAATCGAATTCCCCCAAGACTACCGGTGAAAATGGAAGT
CCCAGTAGAGATCGCAAGCCTTCTCAATCTAATACGAGGGACACCTGG
Protein sequenceShow/hide protein sequence
MEERVMELDNSQKDIIEMINGMSEDFRATLDVVRNEIVEVNTKVNLTMRALANQAPAGGAMAVGKIKIPEPKPFCGARDAKALENFIFDIEQYFKATNTVAEEAKVTLAT
MHLSEDAKLWWRSRYIDIQEGRCAIDTWDSLKRELRSQFSPKMSTFWLDGSCEN