; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI02G16670 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G16670
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionserine/arginine-rich splicing factor SC35-like
Genome locationChr2:16019835..16023490
RNA-Seq ExpressionCSPI02G16670
SyntenyCSPI02G16670
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064834.1 serine/arginine-rich splicing factor SC35-like [Cucumis melo var. makuwa]2.9e-12398Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS
        IRKGRVMESSSKTRGRSRSRSPRSRHRDD+RDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS

Query:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDAD
        PDTRRSISPR+TPPSR RSD+E SPKGDNGSPDDKPVDSRSPSPARSDAD
Subjt:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDAD

XP_008445340.1 PREDICTED: serine/arginine-rich splicing factor SC35-like [Cucumis melo]1.0e-12398.01Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS
        IRKGRVMESSSKTRGRSRSRSPRSRHRDD+RDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS

Query:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        PDTRRSISPR+TPPSR RSD+E SPKGDNGSPDDKPVDSRSPSPARSDADE
Subjt:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

XP_011649457.1 serine/arginine-rich splicing factor SC35 isoform X2 [Cucumis sativus]9.7e-127100Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS
        IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS

Query:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
Subjt:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

XP_031736561.1 serine/arginine-rich splicing factor SC35 isoform X1 [Cucumis sativus]9.1e-12597.67Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDR------SM
        IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDR      SM
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDR------SM

Query:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
Subjt:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

XP_038884086.1 serine/arginine-rich splicing factor SC35-like [Benincasa hispida]7.9e-12196.81Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS
        IRKGRVMESSSKTRGRSRSRSPRSRHRDD RDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTR S
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS

Query:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        PDTRRSISPR+TPP R RSDDEHSP  DNGS DDKPVDSRSPSPARSDADE
Subjt:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

TrEMBL top hitse value%identityAlignment
A0A0A0LQG4 RRM domain-containing protein4.7e-127100Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS
        IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS

Query:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
Subjt:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

A0A1S3BCG4 serine/arginine-rich splicing factor SC35-like4.8e-12498.01Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS
        IRKGRVMESSSKTRGRSRSRSPRSRHRDD+RDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS

Query:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        PDTRRSISPR+TPPSR RSD+E SPKGDNGSPDDKPVDSRSPSPARSDADE
Subjt:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

A0A5A7VC44 Serine/arginine-rich splicing factor SC35-like1.4e-12398Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS
        IRKGRVMESSSKTRGRSRSRSPRSRHRDD+RDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS

Query:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDAD
        PDTRRSISPR+TPPSR RSD+E SPKGDNGSPDDKPVDSRSPSPARSDAD
Subjt:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDAD

A0A6J1HDE4 serine/arginine-rich splicing factor SC35-like isoform X11.0e-11894.42Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS
        IRKG+VMESSSK RGRSRSRSPR RHRDD+RDRDYRRRSRSRSRER+DRDRPHRSERERYRSRSRSASPDR KDR RGRDD ERRSASHSDRSMSP RHS
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS

Query:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        PDTRRSISPR+TPPSR RSDDEHSP+ DNGSPDDKPVDSRSPSPA+SDADE
Subjt:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

A0A6J1K6Z8 serine/arginine-rich splicing factor SC35-like isoform X14.7e-11994.42Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS
        IRKG+VMESSSK RGRSRSRSPR RHRDD+RDRDYRRRSRSRSRER+DRDRPHRSERERYRSRSRSASPDR KDRRRGRDD ERRSASHSDRSMSP RHS
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHS

Query:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        PDTRRSISPR+TPPSR RSD+EHSP+ DNGSPDDKPVDSRSPSPA+SDADE
Subjt:  PDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

SwissProt top hitse value%identityAlignment
P30352 Serine/arginine-rich splicing factor 26.9e-2746.12Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI

Query:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHS---DRSMSP--
        R+G        +    RSRSPR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +     RS S S    RS SP  
Subjt:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHS---DRSMSP--

Query:  --TRHSPDTRRSISPRKTP
           R S    RS SP K+P
Subjt:  --TRHSPDTRRSISPRKTP

Q01130 Serine/arginine-rich splicing factor 22.0e-2646.12Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI

Query:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHS---DRSMSP--
        R+G             RSRSPR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +     RS S S    RS SP  
Subjt:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHS---DRSMSP--

Query:  --TRHSPDTRRSISPRKTP
           R S    RS SP K+P
Subjt:  --TRHSPDTRRSISPRKTP

Q3MHR5 Serine/arginine-rich splicing factor 22.0e-2646.12Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI

Query:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHS---DRSMSP--
        R+G             RSRSPR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +     RS S S    RS SP  
Subjt:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHS---DRSMSP--

Query:  --TRHSPDTRRSISPRKTP
           R S    RS SP K+P
Subjt:  --TRHSPDTRRSISPRKTP

Q62093 Serine/arginine-rich splicing factor 22.0e-2646.12Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI

Query:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHS---DRSMSP--
        R+G             RSRSPR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +     RS S S    RS SP  
Subjt:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHS---DRSMSP--

Query:  --TRHSPDTRRSISPRKTP
           R S    RS SP K+P
Subjt:  --TRHSPDTRRSISPRKTP

Q9FMG4 Serine/arginine-rich splicing factor SC351.4e-6462.36Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVME---SSSKTRGRS--------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRR
        I KGRV+E    S ++R RS                    RSRSPR R RDD+R++DYR+RSRSRS +R  R+R    +R+ R R+RSRSASPD  K R 
Subjt:  IRKGRVME---SSSKTRGRS--------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRR

Query:  RGRDDDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARS
        RGR D+E RS S S  S SP R SP   RS SP+KT P+R  S D+ S             + RSPSP RS
Subjt:  RGRDDDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARS

Arabidopsis top hitse value%identityAlignment
AT1G55310.1 SC35-like splicing factor 331.2e-1037.31Show/hide
Query:  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGR
        SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   +DG +L GRE+ V FA+     E  +K   M +  +  GR
Subjt:  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGR

Query:  ------------SRSRSPRSRH-RDDHRDRDY-----RR---RSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSD-RSM
                    SRSRSP  R  R   R  DY     RR   RS S   ERYD  R +        SR RS +P R K   R      RRS S S  RS 
Subjt:  ------------SRSRSPRSRH-RDDHRDRDY-----RR---RSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSD-RSM

Query:  SPTRHSPDTRRSISPRKT---PPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        SP   SP   RS+SPR++    P R+R     SP+    S   +P  SRS SP     DE
Subjt:  SPTRHSPDTRRSISPRKT---PPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

AT3G13570.1 SC35-like splicing factor 30A1.4e-1136.65Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRK
        FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F+++    +A +A  ++DG +L GRE+ V FA+   N +K  +
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRK

Query:  GRVMESSSKT-RGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSD---RSMSPTR-
         R  +   ++ R + R RSP    R        RR  RSRSR R     P +      R +SRS SP   +DRR  ++    RS  H+    RS SP R 
Subjt:  GRVMESSSKT-RGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSD---RSMSPTR-

Query:  --HSPDTRRSISPRKT---PPSRARSDDEHSPKGDNGSPDDKPVDSRSPSP
          HS   RRS+SPRK     P +ARS           SP   P  SRSP+P
Subjt:  --HSPDTRRSISPRKT---PPSRARSDDEHSPKGDNGSPDDKPVDSRSPSP

AT5G18810.1 SC35-like splicing factor 282.2e-1232.16Show/hide
Query:  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRS
        LL+ N+      +DL   F+++G + D+++PR+  TG+ RGF FV+Y+YA++A +A+ +++ +++ GREI + FA+     E  +  + M +++ T G  
Subjt:  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRS

Query:  RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRR-RGRDDD----ERRSASHSDRSMSPTRHSPDTRRSISPRK
                     R  DY+R S             HRS R RYRS SRS SP R + R  + R+DD     RRS S S   +        +R   SPR+
Subjt:  RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRR-RGRDDD----ERRSASHSDRSMSPTRHSPDTRRSISPRK

AT5G64200.1 ortholog of human splicing factor SC351.0e-6562.36Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVME---SSSKTRGRS--------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRR
        I KGRV+E    S ++R RS                    RSRSPR R RDD+R++DYR+RSRSRS +R  R+R    +R+ R R+RSRSASPD  K R 
Subjt:  IRKGRVME---SSSKTRGRS--------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRR

Query:  RGRDDDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARS
        RGR D+E RS S S  S SP R SP   RS SP+KT P+R  S D+ S             + RSPSP RS
Subjt:  RGRDDDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARS

AT5G64200.2 ortholog of human splicing factor SC351.0e-6562.36Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVME---SSSKTRGRS--------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRR
        I KGRV+E    S ++R RS                    RSRSPR R RDD+R++DYR+RSRSRS +R  R+R    +R+ R R+RSRSASPD  K R 
Subjt:  IRKGRVME---SSSKTRGRS--------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRR

Query:  RGRDDDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARS
        RGR D+E RS S S  S SP R SP   RS SP+KT P+R  S D+ S             + RSPSP RS
Subjt:  RGRDDDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCACTTTGGAAGATCCGGTCCTCCCGATATCAGAGATACCTACTCTCTCCTCGTCCTCAACATCACTTTCCGTACTACCGCCGATGATCTTTACCCCCTTTTCGA
TAAGTATGGAAAGGTCGTCGATGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCGCGAGGATTTGCGTTTGTTCGATATAAGTACGCGGATGAAGCACAGAAGGCAA
TTGATAAGCTTGATGGACGAATGTTGGATGGCAGAGAAATTATGGTTCAATTTGCTAAGTATGGTCCTAATGCTGAGAAAATTCGTAAAGGGAGAGTAATGGAATCATCT
TCGAAGACAAGGGGAAGGTCAAGAAGCCGCAGTCCACGTTCAAGGCACCGTGATGACCATAGGGATAGGGATTACAGGAGAAGAAGCCGCAGTAGAAGCCGTGAGAGATA
TGATCGTGATAGACCCCACAGAAGTGAGAGAGAGCGCTATCGCAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAGTAAAGATCGTAGGAGGGGAAGAGATGATGATGAAC
GACGTAGTGCTAGCCACTCTGATAGAAGCATGTCGCCCACCCGACATTCCCCTGATACTCGGAGAAGCATATCTCCACGTAAGACACCGCCATCTAGGGCTAGAAGCGAC
GATGAACACTCACCAAAGGGAGATAATGGCTCACCAGATGATAAACCAGTTGATTCTCGTAGTCCATCTCCTGCTAGATCCGATGCTGATGAGTGA
mRNA sequenceShow/hide mRNA sequence
GACGAAATTAGTATCAAAACCTAAATAAAAAAGAAACGTAGAGAAACTAAACTCGAAATTGATTTTAAAAGCAAGGACCATTCGTAAATTTTAGTTAAAGTTAAGGGCTT
TCGAAGAAATACACAAAAATGGTTAGAATCTCATTCTTCCACCAGAGACCTAGTTGAGGTTCAGCTCTGAATTCGCCGCCGTTGTTGTTGTTGCTGGTCACCACTCTCTC
CATCGCCGAATCCCATTACCTGCAGTGTGAAAAATGTCGCACTTTGGAAGATCCGGTCCTCCCGATATCAGAGATACCTACTCTCTCCTCGTCCTCAACATCACTTTCCG
TACTACCGCCGATGATCTTTACCCCCTTTTCGATAAGTATGGAAAGGTCGTCGATGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCGCGAGGATTTGCGTTTGTTC
GATATAAGTACGCGGATGAAGCACAGAAGGCAATTGATAAGCTTGATGGACGAATGTTGGATGGCAGAGAAATTATGGTTCAATTTGCTAAGTATGGTCCTAATGCTGAG
AAAATTCGTAAAGGGAGAGTAATGGAATCATCTTCGAAGACAAGGGGAAGGTCAAGAAGCCGCAGTCCACGTTCAAGGCACCGTGATGACCATAGGGATAGGGATTACAG
GAGAAGAAGCCGCAGTAGAAGCCGTGAGAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGAGCGCTATCGCAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAGTA
AAGATCGTAGGAGGGGAAGAGATGATGATGAACGACGTAGTGCTAGCCACTCTGATAGAAGCATGTCGCCCACCCGACATTCCCCTGATACTCGGAGAAGCATATCTCCA
CGTAAGACACCGCCATCTAGGGCTAGAAGCGACGATGAACACTCACCAAAGGGAGATAATGGCTCACCAGATGATAAACCAGTTGATTCTCGTAGTCCATCTCCTGCTAG
ATCCGATGCTGATGAGTGATATACATGCCATTAGAGATAATTTATGGAGCTAAGACATTGGATGTTAGAAATTGTCTAAGCATATTTATAATGGGAACAAGCATGGCATC
CCATGGAGGGATATTTTGCACAATTGTATCTGCCTTTTTGTACTACAAGGACTGATTGGATATCAAGATAGACATGTAGGATCCTTCTCCTAATTAGTTTATGAGTTTTT
TTTTTCTTTTTCTTCTTTTTCTTTTTTAGAATTCAAAGTAGTATCTTTGTACTATTTTACATGCAAAATATAAGTCTTCCCAGTGTTTGATTTTTACCTCCTTAGATGTA
TACTGATTATGAATTGATTCTGCATTGGATCTTGTCCTTTTG
Protein sequenceShow/hide protein sequence
MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESS
SKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSD
DEHSPKGDNGSPDDKPVDSRSPSPARSDADE