; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI02G17100 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G17100
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRNA-binding protein 48
Genome locationChr2:16307758..16311370
RNA-Seq ExpressionCSPI02G17100
SyntenyCSPI02G17100
Gene Ontology termsGO:0005654 - nucleoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR034264 - RBM48, RNA recognition motif
IPR035979 - RNA-binding domain superfamily
IPR039599 - RNA-binding protein 48


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142975.1 RNA-binding protein 48 isoform X2 [Cucumis sativus]9.9e-14399.22Show/hide
Query:  MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVK
        MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRN PALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVK
Subjt:  MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVK

Query:  FHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNP
        FHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTN SRSHYTLKQKNSLEKRNYGDAALISNP
Subjt:  FHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNP

Query:  HVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI
        HVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI
Subjt:  HVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI

XP_008444339.1 PREDICTED: RNA-binding protein 48 isoform X1 [Cucumis melo]1.5e-11494.25Show/hide
Query:  MPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MP FRDE LAVRAYTVCDESRYLIVRN PALGCGD LHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
        ESL+DTKEKLEVRRREVLARLDSGRPRG+AVSSTTAKLTNPSRS+YTL+QKNSLE RNYGDAALIS+PHVSQ+TRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRMDNRRRI
        KIQSSSEHLQAGPASKKSR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRMDNRRRI

XP_011649485.1 RNA-binding protein 48 isoform X1 [Cucumis sativus]2.4e-14198.84Show/hide
Query:  MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVK
        MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRN PALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVK
Subjt:  MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVK

Query:  FHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEK-RNYGDAALISN
        FHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTN SRSHYTLKQKNSLEK RNYGDAALISN
Subjt:  FHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEK-RNYGDAALISN

Query:  PHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI
        PHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI
Subjt:  PHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI

XP_031736618.1 RNA-binding protein 48 isoform X3 [Cucumis sativus]2.3e-11598.59Show/hide
Query:  MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVK
        MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRN PALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVK
Subjt:  MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVK

Query:  FHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEK-RNYGDAALISN
        FHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTN SRSHYTLKQKNSLEK RNYGDAALISN
Subjt:  FHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEK-RNYGDAALISN

Query:  PHVSQITRVSSDQ
        PHVSQITRVSSDQ
Subjt:  PHVSQITRVSSDQ

XP_031736619.1 RNA-binding protein 48 isoform X4 [Cucumis sativus]9.3e-11799.06Show/hide
Query:  MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVK
        MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRN PALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVK
Subjt:  MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVK

Query:  FHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNP
        FHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTN SRSHYTLKQKNSLEKRNYGDAALISNP
Subjt:  FHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNP

Query:  HVSQITRVSSDQ
        HVSQITRVSSDQ
Subjt:  HVSQITRVSSDQ

TrEMBL top hitse value%identityAlignment
A0A0A0LQL2 RNA-binding protein 484.8e-14399.22Show/hide
Query:  MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVK
        MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRN PALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVK
Subjt:  MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVK

Query:  FHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNP
        FHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTN SRSHYTLKQKNSLEKRNYGDAALISNP
Subjt:  FHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNP

Query:  HVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI
        HVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI
Subjt:  HVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI

A0A1S3BA34 RNA-binding protein 487.2e-11594.25Show/hide
Query:  MPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MP FRDE LAVRAYTVCDESRYLIVRN PALGCGD LHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
        ESL+DTKEKLEVRRREVLARLDSGRPRG+AVSSTTAKLTNPSRS+YTL+QKNSLE RNYGDAALIS+PHVSQ+TRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRMDNRRRI
        KIQSSSEHLQAGPASKKSR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRMDNRRRI

A0A5A7V5K4 RNA-binding protein 487.2e-11594.25Show/hide
Query:  MPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MP FRDE LAVRAYTVCDESRYLIVRN PALGCGD LHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
        ESL+DTKEKLEVRRREVLARLDSGRPRG+AVSSTTAKLTNPSRS+YTL+QKNSLE RNYGDAALIS+PHVSQ+TRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRMDNRRRI
        KIQSSSEHLQAGPASKKSR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRMDNRRRI

A0A6J1HAQ6 RNA-binding protein 482.5e-10787.61Show/hide
Query:  MPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MP + +E  AVR YT+CDESRYLIVRN PALGCGD+L KLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLV+NARFAKRKLDEFVFLGNRLQVSYAP+F
Subjt:  MPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
        ESLLDTKEKLEVRRREVLARL+SGRPRG+AV+S T K TNPS SHYTL+QK+SLEKRNYGDAAL SNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRMDNRRRI
        KIQS SEHL+AGP SK+SR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRMDNRRRI

A0A6J1K7Z4 RNA-binding protein 481.7e-10888.5Show/hide
Query:  MPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MP + +E  AVR YT+CDESRYLIVRN PALGCGD+L KLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLV+NARFAKRKLDEFVFLGNRLQVSYAP+F
Subjt:  MPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
        ESLLDTKEKLEVRRREVLARLDSGRPRG+AV+S T K TNPS SHYTL+QKNSLEKRNYGDAAL SNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRMDNRRRI
        KIQS SEHL+AGP SK+SR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRMDNRRRI

SwissProt top hitse value%identityAlignment
A4FVJ7 RNA-binding protein 486.2e-2340.26Show/hide
Query:  AVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK
        AV+ YT+  ESRYL+V+  PA+G   +L +LF+ YG +EE +P+D    ++FT+VY ++F  +T+AR AKR  DE  F G +L V YAPE+E++ +TK+K
Subjt:  AVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK

Query:  LEVRRREV------LARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKR
        L+ RRR V       A+L S   +   V++ ++  T+   +   + QKN  E R
Subjt:  LEVRRREV------LARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKR

Q561R3 RNA-binding protein 481.1e-1942.86Show/hide
Query:  AVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK
        AV+ YT+  ES+YL+++  PA+G   +L + F+ YG +E+   +D    ++FT+VY +KF  + +AR AK+K+DE  F G  L V YAPEFE++ +T++K
Subjt:  AVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK

Query:  LEVRR
        LE R+
Subjt:  LEVRR

Q5R4U2 RNA-binding protein 482.9e-2035.53Show/hide
Query:  AVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK
        AV+ YT+  ES+YL+++  PA+G   +L + F+ YG +E+   +D    ++FT+VY +KF  + +AR AKRK+DE  F G  L V YAPEFE++ +T++K
Subjt:  AVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK

Query:  LEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGD
        L+VR+  V+                    T  ++ HY  K+K   E ++  D
Subjt:  LEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGD

Q5RL73 RNA-binding protein 481.1e-1934.87Show/hide
Query:  AVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK
        AV+ YT+  ES+YL+++  PA+G   +L + F+ YG +E+   +D    ++FT+VY +KF  + +AR AKRK+DE  F G  L V YAPEFE++ +T++K
Subjt:  AVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK

Query:  LEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGD
        L++R+  V+                    T  ++ HY  K+K   E ++  D
Subjt:  LEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGD

Q8K2X2 RNA-binding protein 483.2e-1941.9Show/hide
Query:  AVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK
        AV+ YT+  ES+YL+++  PA+G   +L + F+ YG +E+   +D    ++FT+VY +KF  + +AR AK+K+DE  F G  L V YAPEFE++ +T++K
Subjt:  AVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK

Query:  LEVRR
        L+ R+
Subjt:  LEVRR

Arabidopsis top hitse value%identityAlignment
AT2G27790.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.2e-6353.23Show/hide
Query:  FRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESL
        ++DE+ AVR YTVCDESRY+IVRN PALGCGDDL +LF +YG +EECKPMDAE+C EFTDVY++KF L+TNARFAKRKLDE  FLGNRLQ+SYAPE+E++
Subjt:  FRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESL

Query:  LDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNP--SRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDK
         DTK+KLE RR+EVLARL+  + + T   S   KL  P  +++     Q+  +E + +   A         +TRVSSDQ+YFAS SMNQTV  VREKL+K
Subjt:  LDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNP--SRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDK

Query:  IQSSSEHLQAGPAS-----------------------KKSRMDNRRRI
        I+ S    +  P+S                       K++R+DNRRRI
Subjt:  IQSSSEHLQAGPAS-----------------------KKSRMDNRRRI

AT2G27790.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.2e-6353.23Show/hide
Query:  FRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESL
        ++DE+ AVR YTVCDESRY+IVRN PALGCGDDL +LF +YG +EECKPMDAE+C EFTDVY++KF L+TNARFAKRKLDE  FLGNRLQ+SYAPE+E++
Subjt:  FRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESL

Query:  LDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNP--SRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDK
         DTK+KLE RR+EVLARL+  + + T   S   KL  P  +++     Q+  +E + +   A         +TRVSSDQ+YFAS SMNQTV  VREKL+K
Subjt:  LDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNP--SRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDK

Query:  IQSSSEHLQAGPAS-----------------------KKSRMDNRRRI
        I+ S    +  P+S                       K++R+DNRRRI
Subjt:  IQSSSEHLQAGPAS-----------------------KKSRMDNRRRI

AT5G27300.1 pentatricopeptide (PPR) repeat-containing protein1.3e-5554.3Show/hide
Query:  TVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRR
        +VCDESRY+IVRN PALGCGDDL +LF +YG +EECKPMDAE+C EFTDVY++KF L+TNA    RKLDE  FLGNRLQ+SYAPE+ES+ DTKEKLE RR
Subjt:  TVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRR

Query:  REVLARLDSGRPRGTAVSSTTAKLTNPS---RSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQA
        +EVLARL+  + + T   S   KL  P+     +++ +++    + + G+A          +TRVSS Q+YFAS SMNQ V  VREKL+KI+ S    + 
Subjt:  REVLARLDSGRPRGTAVSSTTAKLTNPS---RSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQA

Query:  GPAS------KKSRMDNRRRI
         P+S      K++R+DNRRRI
Subjt:  GPAS------KKSRMDNRRRI

AT5G27300.2 pentatricopeptide (PPR) repeat-containing protein1.3e-5554.3Show/hide
Query:  TVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRR
        +VCDESRY+IVRN PALGCGDDL +LF +YG +EECKPMDAE+C EFTDVY++KF L+TNA    RKLDE  FLGNRLQ+SYAPE+ES+ DTKEKLE RR
Subjt:  TVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRR

Query:  REVLARLDSGRPRGTAVSSTTAKLTNPS---RSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQA
        +EVLARL+  + + T   S   KL  P+     +++ +++    + + G+A          +TRVSS Q+YFAS SMNQ V  VREKL+KI+ S    + 
Subjt:  REVLARLDSGRPRGTAVSSTTAKLTNPS---RSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQA

Query:  GPAS------KKSRMDNRRRI
         P+S      K++R+DNRRRI
Subjt:  GPAS------KKSRMDNRRRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGTGCCAATTGAGAAAAAGGGCGGAGTTAGATTAGATAACTGGAAATTGGAAATCGGAAGTCGAAATTGGGAGAAGACGGGTTGTTGGGGGATGCCTTGTTTTAG
AGACGAGTCCCTTGCGGTTCGCGCCTATACAGTTTGCGATGAGTCAAGGTATTTGATTGTGAGGAACGCCCCGGCATTGGGTTGTGGAGATGACTTGCACAAACTGTTCT
CCTCCTACGGGAACCTTGAAGAGTGTAAACCCATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTTCATTTGGTCACCAATGCCAGGTTTGCA
AAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTCCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTGGAAGTTAGGAGACG
GGAAGTTTTAGCACGATTGGATTCTGGCAGACCAAGAGGAACTGCAGTTAGTTCAACAACCGCAAAGCTTACAAATCCATCTCGCTCTCATTATACTCTTAAACAGAAGA
ACTCCCTTGAAAAGAGGAATTATGGAGACGCAGCACTCATTTCCAATCCCCATGTTTCTCAAATAACAAGAGTTTCCTCTGACCAGGATTACTTCGCATCTGAATCTATG
AATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCTGCGAGCAAGAAATCACGTATGGACAATAGGAGGAG
AATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGTGCCAATTGAGAAAAAGGGCGGAGTTAGATTAGATAACTGGAAATTGGAAATCGGAAGTCGAAATTGGGAGAAGACGGGTTGTTGGGGGATGCCTTGTTTTAG
AGACGAGTCCCTTGCGGTTCGCGCCTATACAGTTTGCGATGAGTCAAGGTATTTGATTGTGAGGAACGCCCCGGCATTGGGTTGTGGAGATGACTTGCACAAACTGTTCT
CCTCCTACGGGAACCTTGAAGAGTGTAAACCCATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTTCATTTGGTCACCAATGCCAGGTTTGCA
AAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTCCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTGGAAGTTAGGAGACG
GGAAGTTTTAGCACGATTGGATTCTGGCAGACCAAGAGGAACTGCAGTTAGTTCAACAACCGCAAAGCTTACAAATCCATCTCGCTCTCATTATACTCTTAAACAGAAGA
ACTCCCTTGAAAAGAGGAATTATGGAGACGCAGCACTCATTTCCAATCCCCATGTTTCTCAAATAACAAGAGTTTCCTCTGACCAGGATTACTTCGCATCTGAATCTATG
AATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCTGCGAGCAAGAAATCACGTATGGACAATAGGAGGAG
AATCTAA
Protein sequenceShow/hide protein sequence
MIVPIEKKGGVRLDNWKLEIGSRNWEKTGCWGMPCFRDESLAVRAYTVCDESRYLIVRNAPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFA
KRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLTNPSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESM
NQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI