CuGenDBv2

Gene ID	CSPI02G18770
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	F-box protein GID2-like
Genome location	Chr2:17260462..17261149
RNA-Seq Expression	CSPI02G18770
Synteny	CSPI02G18770
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598351.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

8.4e-59

82.14

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Query:  IKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF
        +KK KSVS +Q+     P  S FANLDDNLLFEVFKHVDARTLAT AGVSKQW+KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF
Subjt:  IKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF

Query:  PPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        PP+IG     PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  PPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_004143017.1 F-box protein GID2 [Cucumis sativus]

5.6e-79

100

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Query:  MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS
        MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS
Subjt:  MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS

Query:  LYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        LYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  LYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_008445558.1 PREDICTED: F-box protein GID2-like [Cucumis melo]

1.1e-74

95.8

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Query:  MNNRIKKFKSVSNQQE-PDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
        MNN+IKKFKS SNQQE PD SQPQPSTFANLDDNLLFEVFKHVDARTLAT AGV+KQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
Subjt:  MNNRIKKFKSVSNQQE-PDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH

Query:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_022962352.1 F-box protein GID2-like [Cucurbita moschata]

7.1e-58

81.43

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Query:  IKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF
        +KK KSVS +Q+     P  S FANLDDNLLFEVFKHVDARTLAT AGVSKQW KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF
Subjt:  IKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF

Query:  PPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        PP++G     PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  PPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_023522812.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]

1.4e-58

81.82

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Query:  IKKFKSVSNQQEPDHSQPQPST---FANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSL
        +KK KSVS +Q+     P PS+   FANLDDNLLFEVFKHVDARTLAT AGVSKQW+KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSL
Subjt:  IKKFKSVSNQQEPDHSQPQPST---FANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSL

Query:  YPFPPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        YPFPP+IG     PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  YPFPPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR75 F-box domain-containing protein

2.7e-79

100

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Query:  MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS
        MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS
Subjt:  MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS

Query:  LYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        LYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  LYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A1S3BDV6 F-box protein GID2-like

5.3e-75

95.8

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Query:  MNNRIKKFKSVSNQQE-PDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
        MNN+IKKFKS SNQQE PD SQPQPSTFANLDDNLLFEVFKHVDARTLAT AGV+KQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
Subjt:  MNNRIKKFKSVSNQQE-PDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH

Query:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A5A7V5E1 F-box protein GID2-like

5.3e-75

95.8

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Query:  MNNRIKKFKSVSNQQE-PDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
        MNN+IKKFKS SNQQE PD SQPQPSTFANLDDNLLFEVFKHVDARTLAT AGV+KQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
Subjt:  MNNRIKKFKSVSNQQE-PDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH

Query:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A6J1HCI1 F-box protein GID2-like

3.4e-58

81.43

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Query:  IKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF
        +KK KSVS +Q+     P  S FANLDDNLLFEVFKHVDARTLAT AGVSKQW KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF
Subjt:  IKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF

Query:  PPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        PP++G     PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  PPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A6J1K7I7 F-box protein GID2-like

8.4e-57

80.71

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Query:  IKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF
        +KK KSVS  QE     P  S FANLDDNLLFEVFKHVDARTLAT +GVSKQW+KTAHDE LWELLCTKHW N+GCAN QLRSVVLALGGFRRLHSLYPF
Subjt:  IKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF

Query:  PPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        PP+IG      WGK EVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  PPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

5.9e-23

42.86

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Query:  QQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLY---------PF
        Q   D  + +     +L ++L+FEV +  +ARTLA  A VS+ W + A DERLWE  C + W NLG + +QLR+VVL+LGGFRRLH++Y           
Subjt:  QQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLY---------PF

Query:  PPMIGCNHP---WGKDEVHLSLSLLSIRYYEKM
        P   G   P    G+D+V LSLSL SI +++ M
Subjt:  PPMIGCNHP---WGKDEVHLSLSLLSIRYYEKM

Q9LUB6 F-box protein SNE

9.7e-10

33.98

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Query:  NLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGC-NHPWGKDEVHLSLSLLSIRYY
        ++L E+ + +D  +L + A V + W   A ++ +WE LC +  +     +  LRSVV ALGG+R L+ L   P +       W +D++ LSLSL  + YY
Subjt:  NLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGC-NHPWGKDEVHLSLSLLSIRYY

Query:  EKM
        E++
Subjt:  EKM

Q9STX3 F-box protein GID2

2.6e-39

59.15

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Query:  NNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSL
        N   KK KS   ++           F+NLD+NL++EV KHVDA+TLA  + VSK W KTA DERLWEL+CT+HWTN+GC   QLRSVVLALGGFRRLHSL
Subjt:  NNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSL

Query:  YPFPPMIGCNHP---WGKDEVHLSLSLLSIRYYEKMKFKNRP
        Y +P  +   +P   +GKDE+ L+LSLLSIRYYEKM F  RP
Subjt:  YPFPPMIGCNHP---WGKDEVHLSLSLLSIRYYEKMKFKNRP

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

1.9e-40

59.15

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Query:  NNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSL
        N   KK KS   ++           F+NLD+NL++EV KHVDA+TLA  + VSK W KTA DERLWEL+CT+HWTN+GC   QLRSVVLALGGFRRLHSL
Subjt:  NNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSL

Query:  YPFPPMIGCNHP---WGKDEVHLSLSLLSIRYYEKMKFKNRP
        Y +P  +   +P   +GKDE+ L+LSLLSIRYYEKM F  RP
Subjt:  YPFPPMIGCNHP---WGKDEVHLSLSLLSIRYYEKMKFKNRP

AT5G48170.1 F-box family protein

6.9e-11

33.98

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Query:  NLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGC-NHPWGKDEVHLSLSLLSIRYY
        ++L E+ + +D  +L + A V + W   A ++ +WE LC +  +     +  LRSVV ALGG+R L+ L   P +       W +D++ LSLSL  + YY
Subjt:  NLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGC-NHPWGKDEVHLSLSLLSIRYY

Query:  EKM
        E++
Subjt:  EKM

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAACAACAGAATCAAGAAATTTAAATCAGTTTCAAACCAACAAGAACCAGATCACTCTCAACCACAACCCTCTACCTTTGCAAATTTAGACGACAATTTGTTGTTCGA
GGTGTTTAAGCACGTCGATGCAAGGACACTGGCTACCGTCGCCGGCGTCAGCAAGCAGTGGTTCAAAACCGCTCACGACGAGCGCCTCTGGGAGCTTCTCTGCACCAAAC
ACTGGACCAACCTTGGCTGTGCTAACCAACAGCTACGCTCCGTCGTTCTTGCGCTTGGTGGCTTCCGTCGATTACATTCTCTTTACCCATTTCCCCCTATGATTGGATGT
AATCATCCATGGGGCAAAGATGAGGTTCATCTCTCCCTTTCTCTTCTCTCAATTCGTTACTACGAGAAGATGAAGTTTAAAAACAGACCCACATCTTGA

mRNA sequence

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GATTTGTCGTCTTCTTCTTCTTCTTCTTCTTTTCTCGCAGACAATTTGCAAAATCACTTTACCAACTACTCTCCCCCATTCATCTTCTTTCTATTTCTTCCCCCATTTCC
CTTTCTTCATCTCAAAGTCTTCCTCTTTTTCAACCCAATTGCCAATGAACAACAGAATCAAGAAATTTAAATCAGTTTCAAACCAACAAGAACCAGATCACTCTCAACCA
CAACCCTCTACCTTTGCAAATTTAGACGACAATTTGTTGTTCGAGGTGTTTAAGCACGTCGATGCAAGGACACTGGCTACCGTCGCCGGCGTCAGCAAGCAGTGGTTCAA
AACCGCTCACGACGAGCGCCTCTGGGAGCTTCTCTGCACCAAACACTGGACCAACCTTGGCTGTGCTAACCAACAGCTACGCTCCGTCGTTCTTGCGCTTGGTGGCTTCC
GTCGATTACATTCTCTTTACCCATTTCCCCCTATGATTGGATGTAATCATCCATGGGGCAAAGATGAGGTTCATCTCTCCCTTTCTCTTCTCTCAATTCGTTACTACGAG
AAGATGAAGTTTAAAAACAGACCCACATCTTGAAATCCCAAGTAATCCAAATGTAAGATCACACCAAATTGAGGGAGGTTCTCTCTGTGTTGAAATTGACATTATTATTG
TTCCTTTTTCTTCTACTGTATCGGATGG

Protein sequence

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MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGC
NHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

CSPI02G18770 (gene) of Cucumber (PI 183967) v1 genome